Wall clock time and date at job start Mon Mar 30 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47315 * 2 1 4 4 C 1.52999 * 109.47490 * 120.00211 * 2 1 3 5 5 C 1.53000 * 109.46922 * 65.65459 * 4 2 1 6 6 H 1.09003 * 109.47398 * 302.61032 * 5 4 2 7 7 C 1.50705 * 109.47380 * 182.60796 * 5 4 2 8 8 H 1.07996 * 119.99491 * 240.00178 * 7 5 4 9 9 C 1.37875 * 120.00010 * 59.99721 * 7 5 4 10 10 N 1.31520 * 119.99642 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00131 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47141 * 90.00219 * 11 9 7 13 13 H 1.48500 * 109.47468 * 210.00320 * 11 9 7 14 14 H 1.48502 * 109.47060 * 330.00147 * 11 9 7 15 15 N 1.46904 * 109.47074 * 62.60629 * 5 4 2 16 16 C 1.46901 * 110.99865 * 205.90559 * 15 5 4 17 17 C 1.53002 * 109.46961 * 183.73480 * 16 15 5 18 18 C 1.50702 * 109.46981 * 179.97438 * 17 16 15 19 19 C 1.33645 * 122.74462 * 125.00191 * 18 17 16 20 20 S 1.76196 * 107.92137 * 180.02562 * 19 18 17 21 21 C 1.70979 * 90.28514 * 359.97438 * 20 19 18 22 22 N 1.29028 * 110.16654 * 359.73720 * 21 20 19 23 23 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 24 24 H 1.09004 * 109.47498 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47358 * 299.99978 * 1 2 3 26 26 H 1.08999 * 109.47449 * 240.00568 * 2 1 3 27 27 H 1.08998 * 109.46983 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47371 * 300.00478 * 3 2 1 29 29 H 1.09000 * 109.46584 * 60.00439 * 3 2 1 30 30 H 1.09001 * 109.47026 * 305.66158 * 4 2 1 31 31 H 1.08999 * 109.47556 * 185.65371 * 4 2 1 32 32 H 0.96998 * 119.99667 * 179.97438 * 10 9 7 33 33 H 1.00898 * 110.99596 * 81.95071 * 15 5 4 34 34 H 1.09007 * 109.47279 * 303.73065 * 16 15 5 35 35 H 1.08997 * 109.47772 * 63.73171 * 16 15 5 36 36 H 1.08997 * 109.46899 * 299.99767 * 17 16 15 37 37 H 1.09000 * 109.47022 * 59.99826 * 17 16 15 38 38 H 1.07995 * 126.03764 * 359.97438 * 19 18 17 39 39 H 1.07997 * 124.91811 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6494 -2.1990 1.1801 6 1 0.5672 -2.2845 1.0813 7 6 2.0956 -2.8960 2.4395 8 1 2.7913 -3.7201 2.3829 9 6 1.6158 -2.4816 3.6638 10 7 0.7683 -1.4782 3.7324 11 14 2.1694 -3.3451 5.2249 12 1 3.3858 -2.6782 5.7547 13 1 1.0864 -3.2773 6.2388 14 1 2.4759 -4.7662 4.9224 15 7 2.2978 -2.8231 0.0190 16 6 1.5307 -3.9842 -0.4513 17 6 2.2826 -4.6614 -1.5989 18 6 1.4959 -5.8530 -2.0810 19 6 1.1327 -6.0111 -3.3574 20 16 0.2372 -7.5233 -3.4830 21 6 0.4409 -7.7930 -1.8069 22 7 1.1149 -6.8273 -1.2796 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.5963 -0.2694 2.1363 31 1 3.1253 -0.6344 1.3013 32 1 0.4304 -1.1869 4.5937 33 1 3.2499 -3.0807 0.2317 34 1 1.4041 -4.6921 0.3679 35 1 0.5523 -3.6556 -0.8019 36 1 2.4091 -3.9535 -2.4181 37 1 3.2610 -4.9900 -1.2483 38 1 1.3491 -5.3315 -4.1684 39 1 0.0642 -8.6500 -1.2684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309681369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:16 Heat of formation + Delta-G solvation = 22.454023 kcal Electronic energy + Delta-G solvation = -18371.403759 eV Core-core repulsion = 15633.000719 eV Total energy + Delta-G solvation = -2738.403040 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79928 -36.79410 -34.41196 -32.78253 -31.40571 -29.01776 -26.62718 -26.30697 -24.88527 -24.73546 -21.83383 -20.55328 -19.48271 -18.56429 -17.77558 -16.55651 -15.79655 -14.84599 -14.66368 -14.25761 -13.96519 -13.75820 -13.29458 -13.21583 -12.96233 -12.73409 -12.51901 -11.67207 -11.57810 -11.40950 -11.11302 -10.99544 -10.96069 -10.66951 -10.51785 -10.38082 -10.03158 -9.98241 -9.60312 -9.47076 -9.44568 -9.28396 -8.88271 -8.73066 -8.29360 -7.18322 -5.94083 -4.05895 0.74334 1.40502 1.72607 2.88765 3.30515 3.37511 3.41327 4.28779 4.44608 5.05460 5.20588 5.28852 5.31865 5.67519 5.73470 5.91520 5.93329 5.97666 5.99991 6.03308 6.32492 6.37012 6.58181 6.62285 6.65264 6.71297 6.84874 7.02867 7.11058 7.18769 7.25279 7.54468 7.66867 7.80417 7.84600 8.15704 8.22531 8.39681 8.72272 9.06269 9.61003 11.05745 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.005131 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.394916 B = 5455.198921 C = 6824.749329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.092 4.092 5 C 0.214 3.786 6 H 0.035 0.965 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.068 3.932 10 N -0.884 5.884 11 Si 0.886 3.114 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.276 1.276 15 N -0.690 5.690 16 C 0.076 3.924 17 C -0.046 4.046 18 C 0.081 3.919 19 C -0.257 4.257 20 S 0.087 5.913 21 C 0.026 3.974 22 N -0.458 5.458 23 H 0.029 0.971 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.044 0.956 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.260 0.740 33 H 0.326 0.674 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.177 0.823 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.496 -6.884 -13.468 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.131 4.131 5 C 0.107 3.893 6 H 0.053 0.947 7 C -0.582 4.582 8 H 0.071 0.929 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.714 3.286 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.201 1.201 15 N -0.319 5.319 16 C -0.055 4.055 17 C -0.086 4.086 18 C -0.051 4.051 19 C -0.395 4.395 20 S 0.339 5.661 21 C -0.273 4.273 22 N -0.171 5.171 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.288 -6.922 -14.003 15.674 hybrid contribution 0.834 -0.517 2.000 2.228 sum -0.454 -7.439 -12.003 14.129 Atomic orbital electron populations 1.21728 0.96706 1.01215 0.99384 1.21097 0.94796 0.94180 1.00984 1.21847 1.00107 0.97965 1.00037 1.21589 0.98109 0.96830 0.96545 1.19161 0.94493 0.90829 0.84845 0.94671 1.21871 1.27337 1.16511 0.92504 0.92932 1.24903 0.94806 0.94909 0.98815 1.69883 1.31127 1.26395 1.24833 0.86692 0.78311 0.80123 0.83454 1.20713 1.21278 1.20095 1.60961 1.05314 1.26984 1.38683 1.21632 0.96402 0.92554 0.94901 1.20307 0.97453 0.90975 0.99882 1.20542 0.99763 0.96250 0.88541 1.26845 1.08817 1.02184 1.01670 1.83890 1.52282 1.18145 1.11815 1.28447 1.01651 1.02130 0.95111 1.66157 1.11799 1.01571 1.37579 0.95204 0.92851 0.93303 0.91431 0.93689 0.94441 0.93497 0.89111 0.95202 0.93018 0.85842 0.94196 0.92670 0.89936 0.90551 0.80607 0.78605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.96 37.15 0.33 -2.27 16 2 C -0.09 -1.83 2.85 -90.62 -0.26 -2.09 16 3 C -0.14 -2.47 9.19 37.16 0.34 -2.13 16 4 C -0.09 -2.16 4.18 -26.73 -0.11 -2.27 16 5 C 0.21 5.24 1.83 -68.86 -0.13 5.11 16 6 H 0.04 0.96 6.16 -51.93 -0.32 0.64 16 7 C -0.54 -14.73 8.36 -34.44 -0.29 -15.02 16 8 H 0.05 1.44 7.73 -52.49 -0.41 1.03 16 9 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 10 N -0.88 -24.93 11.30 55.43 0.63 -24.30 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 N -0.69 -14.29 5.53 -107.94 -0.60 -14.89 16 16 C 0.08 1.45 5.38 -3.82 -0.02 1.43 16 17 C -0.05 -0.70 5.93 -27.88 -0.17 -0.86 16 18 C 0.08 1.19 6.07 -84.22 -0.51 0.68 16 19 C -0.26 -3.07 11.07 29.12 0.32 -2.75 16 20 S 0.09 0.88 23.22 -107.50 -2.50 -1.62 16 21 C 0.03 0.30 12.23 51.58 0.63 0.93 16 22 N -0.46 -7.16 10.35 -11.89 -0.12 -7.28 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.12 6.53 -51.93 -0.34 0.78 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.34 7.52 -51.93 -0.39 0.95 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 2.39 6.01 -51.93 -0.31 2.08 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.33 6.68 8.35 -39.29 -0.33 6.35 16 34 H 0.04 0.88 7.91 -51.92 -0.41 0.47 16 35 H 0.05 1.10 8.13 -51.93 -0.42 0.68 16 36 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.18 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -28.97 330.40 -8.86 -37.84 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.28 Total: 6.26 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 0.05 Total: -17.44 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.09 Total: -46.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.97 -8.86 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309681369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.292 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds