Wall clock time and date at job start Mon Mar 30 2020 06:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47315 * 2 1 4 4 C 1.52999 * 109.47490 * 120.00211 * 2 1 3 5 5 C 1.53000 * 109.46922 * 65.65459 * 4 2 1 6 6 H 1.09003 * 109.47398 * 302.61032 * 5 4 2 7 7 C 1.50705 * 109.47380 * 182.60796 * 5 4 2 8 8 H 1.07996 * 119.99491 * 240.00178 * 7 5 4 9 9 C 1.37875 * 120.00010 * 59.99721 * 7 5 4 10 10 N 1.31520 * 119.99642 * 0.02562 * 9 7 5 11 11 Si 1.86793 * 120.00131 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47141 * 90.00219 * 11 9 7 13 13 H 1.48500 * 109.47468 * 210.00320 * 11 9 7 14 14 H 1.48502 * 109.47060 * 330.00147 * 11 9 7 15 15 N 1.46904 * 109.47074 * 62.60629 * 5 4 2 16 16 C 1.46901 * 110.99865 * 205.90559 * 15 5 4 17 17 C 1.53002 * 109.46961 * 183.73480 * 16 15 5 18 18 C 1.50702 * 109.46981 * 179.97438 * 17 16 15 19 19 C 1.33645 * 122.74462 * 125.00191 * 18 17 16 20 20 S 1.76196 * 107.92137 * 180.02562 * 19 18 17 21 21 C 1.70979 * 90.28514 * 359.97438 * 20 19 18 22 22 N 1.29028 * 110.16654 * 359.73720 * 21 20 19 23 23 H 1.08996 * 109.47291 * 59.99473 * 1 2 3 24 24 H 1.09004 * 109.47498 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47358 * 299.99978 * 1 2 3 26 26 H 1.08999 * 109.47449 * 240.00568 * 2 1 3 27 27 H 1.08998 * 109.46983 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47371 * 300.00478 * 3 2 1 29 29 H 1.09000 * 109.46584 * 60.00439 * 3 2 1 30 30 H 1.09001 * 109.47026 * 305.66158 * 4 2 1 31 31 H 1.08999 * 109.47556 * 185.65371 * 4 2 1 32 32 H 0.96998 * 119.99667 * 179.97438 * 10 9 7 33 33 H 1.00898 * 110.99596 * 81.95071 * 15 5 4 34 34 H 1.09007 * 109.47279 * 303.73065 * 16 15 5 35 35 H 1.08997 * 109.47772 * 63.73171 * 16 15 5 36 36 H 1.08997 * 109.46899 * 299.99767 * 17 16 15 37 37 H 1.09000 * 109.47022 * 59.99826 * 17 16 15 38 38 H 1.07995 * 126.03764 * 359.97438 * 19 18 17 39 39 H 1.07997 * 124.91811 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6494 -2.1990 1.1801 6 1 0.5672 -2.2845 1.0813 7 6 2.0956 -2.8960 2.4395 8 1 2.7913 -3.7201 2.3829 9 6 1.6158 -2.4816 3.6638 10 7 0.7683 -1.4782 3.7324 11 14 2.1694 -3.3451 5.2249 12 1 3.3858 -2.6782 5.7547 13 1 1.0864 -3.2773 6.2388 14 1 2.4759 -4.7662 4.9224 15 7 2.2978 -2.8231 0.0190 16 6 1.5307 -3.9842 -0.4513 17 6 2.2826 -4.6614 -1.5989 18 6 1.4959 -5.8530 -2.0810 19 6 1.1327 -6.0111 -3.3574 20 16 0.2372 -7.5233 -3.4830 21 6 0.4409 -7.7930 -1.8069 22 7 1.1149 -6.8273 -1.2796 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.5963 -0.2694 2.1363 31 1 3.1253 -0.6344 1.3013 32 1 0.4304 -1.1869 4.5937 33 1 3.2499 -3.0807 0.2317 34 1 1.4041 -4.6921 0.3679 35 1 0.5523 -3.6556 -0.8019 36 1 2.4091 -3.9535 -2.4181 37 1 3.2610 -4.9900 -1.2483 38 1 1.3491 -5.3315 -4.1684 39 1 0.0642 -8.6500 -1.2684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309681369.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:15 Heat of formation + Delta-G solvation = 4.675661 kcal Electronic energy + Delta-G solvation = -18372.174687 eV Core-core repulsion = 15633.000719 eV Total energy + Delta-G solvation = -2739.173968 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80956 -38.57447 -35.95445 -34.68960 -32.85164 -30.44476 -28.10203 -27.84777 -26.90191 -25.77899 -23.32373 -22.39415 -20.52977 -20.21511 -18.89648 -18.50437 -16.88550 -16.68892 -16.16578 -15.71676 -15.53320 -15.19992 -14.83358 -14.53516 -14.27873 -14.08707 -14.01065 -13.34928 -13.10674 -12.93760 -12.86363 -12.66962 -12.57245 -12.36837 -12.17691 -11.97769 -11.83786 -11.73949 -11.28838 -11.02742 -10.79476 -10.53330 -10.38859 -10.36946 -9.68112 -9.03496 -8.03543 -6.24490 -0.16612 0.55116 0.81337 1.35827 1.37360 1.46349 1.86380 2.40114 3.15414 3.37554 3.71621 4.18533 4.29425 4.35376 4.38495 4.40168 4.44312 4.49697 4.72050 4.74713 4.92394 4.97664 5.07364 5.12163 5.15269 5.19322 5.25996 5.32815 5.37098 5.46939 5.51550 5.62892 5.79799 5.88801 6.19644 6.25256 6.40975 6.83519 6.87335 7.04602 7.45685 8.92165 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015514 B = 0.005131 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.394916 B = 5455.198921 C = 6824.749329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.136 4.136 4 C -0.083 4.083 5 C 0.222 3.778 6 H 0.002 0.998 7 C -0.561 4.561 8 H 0.043 0.957 9 C 0.023 3.977 10 N -0.905 5.905 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.278 1.278 15 N -0.676 5.676 16 C 0.087 3.913 17 C -0.032 4.032 18 C 0.047 3.953 19 C -0.255 4.255 20 S 0.161 5.839 21 C 0.010 3.990 22 N -0.510 5.510 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.033 0.967 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.261 0.739 33 H 0.328 0.672 34 H 0.003 0.997 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.201 0.799 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -7.237 -15.443 17.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C -0.193 4.193 4 C -0.122 4.122 5 C 0.114 3.886 6 H 0.020 0.980 7 C -0.600 4.600 8 H 0.061 0.939 9 C -0.177 4.177 10 N -0.544 5.544 11 Si 0.771 3.229 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.203 1.203 15 N -0.305 5.305 16 C -0.044 4.044 17 C -0.073 4.073 18 C -0.084 4.084 19 C -0.394 4.394 20 S 0.413 5.587 21 C -0.287 4.287 22 N -0.225 5.225 23 H 0.080 0.920 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.144 0.856 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.091 0.909 38 H 0.218 0.782 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.110 -7.288 -15.993 17.611 hybrid contribution 0.706 -0.499 2.530 2.674 sum -0.404 -7.786 -13.463 15.558 Atomic orbital electron populations 1.21647 0.96509 0.99979 1.00205 1.21019 0.94900 0.95663 0.98961 1.21770 1.00541 0.95960 1.01058 1.21394 0.97281 0.96254 0.97249 1.18936 0.92644 0.91859 0.85196 0.97968 1.22176 1.27270 1.16515 0.94035 0.93864 1.25585 0.94993 0.95593 1.01561 1.70010 1.31780 1.27248 1.25388 0.85770 0.78134 0.78881 0.80106 1.19877 1.20816 1.20301 1.60905 1.05269 1.27638 1.36670 1.21505 0.96481 0.91124 0.95246 1.20109 0.96791 0.91716 0.98640 1.20438 1.01745 0.96496 0.89764 1.27205 1.07522 1.03433 1.01256 1.83625 1.50051 1.15809 1.09192 1.28902 1.00840 1.02035 0.96936 1.66133 1.13865 1.02987 1.39494 0.91971 0.95134 0.94750 0.90989 0.93007 0.91675 0.94191 0.92183 0.95932 0.93012 0.85555 0.97901 0.93790 0.87882 0.90871 0.78207 0.76234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.90 8.96 71.98 0.65 -4.25 16 2 C -0.09 -3.40 2.85 -10.80 -0.03 -3.43 16 3 C -0.14 -4.47 9.19 71.98 0.66 -3.81 16 4 C -0.08 -3.97 4.18 30.59 0.13 -3.84 16 5 C 0.22 11.27 1.83 44.17 0.08 11.35 16 6 H 0.00 0.14 6.16 -2.39 -0.01 0.12 16 7 C -0.56 -31.48 8.36 25.60 0.21 -31.26 16 8 H 0.04 2.45 7.73 -2.91 -0.02 2.42 16 9 C 0.02 1.29 5.30 84.65 0.45 1.74 16 10 N -0.91 -52.50 11.30 21.45 0.24 -52.26 16 11 Si 0.94 44.89 29.54 68.60 2.03 46.92 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 15 N -0.68 -28.69 5.53 -495.42 -2.74 -31.43 16 16 C 0.09 3.46 5.38 86.30 0.46 3.93 16 17 C -0.03 -0.99 5.93 29.85 0.18 -0.81 16 18 C 0.05 1.36 6.07 41.52 0.25 1.62 16 19 C -0.26 -5.53 11.07 66.78 0.74 -4.79 16 20 S 0.16 2.81 23.22 -56.49 -1.31 1.49 16 21 C 0.01 0.23 12.23 130.65 1.60 1.83 16 22 N -0.51 -15.99 10.35 -191.54 -1.98 -17.97 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.29 6.53 -2.39 -0.02 1.28 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.07 2.77 7.52 -2.39 -0.02 2.75 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 3.26 6.01 -2.39 -0.01 3.25 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.33 13.74 8.35 -89.70 -0.75 12.99 16 34 H 0.00 0.12 7.91 -2.38 -0.02 0.11 16 35 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 36 H 0.10 2.66 8.03 -2.39 -0.02 2.64 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.22 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -64.78 330.40 1.89 -62.89 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.28 Total: 22.10 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 5.38 Total: -31.74 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -4.48 Total: -101.66 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.31 Total: 1.49 kcal Total: -64.78 1.89 -62.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309681369.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.563 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds