Wall clock time and date at job start Mon Mar 30 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00155 * 2 1 4 4 H 1.08996 * 110.01842 * 54.93546 * 3 2 1 5 5 C 1.54267 * 110.03046 * 293.54452 * 3 2 1 6 6 C 1.54890 * 104.19664 * 217.05966 * 5 3 2 7 7 C 1.54889 * 102.75092 * 37.94231 * 6 5 3 8 8 H 1.09004 * 110.48718 * 80.86794 * 7 6 5 9 9 N 1.46895 * 110.49094 * 203.38221 * 7 6 5 10 10 C 1.46903 * 110.99989 * 273.54912 * 9 7 6 11 11 C 1.53002 * 109.47041 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47355 * 304.99499 * 11 10 9 13 13 C 1.47196 * 109.46985 * 64.99758 * 11 10 9 14 14 N 8.02285 * 150.81389 * 358.00229 * 2 1 3 15 15 C 1.53000 * 109.46776 * 184.99509 * 11 10 9 16 16 C 1.50703 * 109.46912 * 175.00090 * 15 11 10 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 11 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47116 * 59.99536 * 20 18 16 22 22 H 1.48500 * 109.46585 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46730 * 299.99515 * 20 18 16 24 24 C 1.53885 * 110.07124 * 176.35725 * 3 2 1 25 25 H 1.09001 * 109.46741 * 59.99841 * 1 2 3 26 26 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46813 * 300.00112 * 1 2 3 28 28 H 1.08997 * 110.48725 * 98.37914 * 5 3 2 29 29 H 1.08999 * 110.48863 * 335.73728 * 5 3 2 30 30 H 1.09002 * 110.75657 * 279.63224 * 6 5 3 31 31 H 1.09002 * 110.75994 * 156.25802 * 6 5 3 32 32 H 1.00900 * 111.00592 * 149.58928 * 9 7 6 33 33 H 1.08993 * 109.47016 * 59.99512 * 10 9 7 34 34 H 1.09001 * 109.46643 * 299.99223 * 10 9 7 35 35 H 1.09002 * 109.47398 * 295.00168 * 15 11 10 36 36 H 1.09001 * 109.47194 * 55.00349 * 15 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.02862 * 0.02562 * 24 3 2 39 39 H 1.08998 * 110.02817 * 238.58709 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7328 2.2634 0.8382 5 6 1.7769 2.4126 -1.3287 6 6 2.8886 3.4448 -1.6411 7 6 4.1741 2.7115 -1.1843 8 1 4.5065 2.0110 -1.9504 9 7 5.2366 3.6787 -0.8781 10 6 5.9930 4.0301 -2.0874 11 6 7.0876 5.0375 -1.7295 12 1 6.6409 5.8976 -1.2311 13 6 8.0643 4.4018 -0.8301 14 7 8.8183 3.9099 -0.1364 15 6 7.7941 5.4978 -3.0061 16 6 8.7877 6.5794 -2.6682 17 1 8.9038 6.9054 -1.6452 18 6 9.5483 7.1527 -3.6650 19 7 9.4072 6.7553 -4.9108 20 14 10.7804 8.4928 -3.2461 21 1 11.7842 7.9610 -2.2897 22 1 11.4660 8.9397 -4.4852 23 1 10.0706 9.6427 -2.6303 24 6 3.7464 1.9575 0.0918 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.8157 2.9121 -1.2070 29 1 1.7207 1.6621 -2.1172 30 1 2.7400 4.3586 -1.0657 31 1 2.9260 3.6612 -2.7088 32 1 5.8493 3.3269 -0.1578 33 1 5.3194 4.4716 -2.8217 34 1 6.4478 3.1320 -2.5052 35 1 8.3154 4.6537 -3.4575 36 1 7.0575 5.8878 -3.7086 37 1 9.9421 7.1588 -5.6122 38 1 4.2416 0.9875 0.1360 39 1 3.9968 2.5457 0.9747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309845007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:44 Heat of formation + Delta-G solvation = -0.545387 kcal Electronic energy + Delta-G solvation = -17687.696565 eV Core-core repulsion = 14948.296195 eV Total energy + Delta-G solvation = -2739.400369 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.79564 -36.85664 -34.52100 -33.32512 -31.39024 -29.40580 -28.95796 -27.66107 -25.62295 -22.79912 -21.85707 -20.85804 -20.23910 -16.96696 -16.67553 -16.50921 -16.01107 -15.41893 -14.96904 -14.63767 -14.29716 -13.74896 -13.68549 -13.56186 -13.15781 -13.04557 -12.64515 -12.27605 -12.12307 -11.89643 -11.65054 -11.39410 -11.25629 -11.16540 -11.09847 -11.03757 -10.79674 -10.69233 -10.53893 -10.24846 -10.05324 -9.54312 -9.24218 -8.45625 -8.36605 -7.94130 -6.09643 -4.12930 1.43382 2.29153 3.31180 3.35400 3.38994 3.55831 3.61299 4.11697 4.24523 4.34997 4.42005 4.79850 4.81200 4.82539 4.98001 5.09217 5.19399 5.25535 5.28254 5.34869 5.36592 5.51750 5.52826 5.61852 5.71828 5.80335 5.89785 6.01484 6.14702 6.17838 6.39465 6.54091 7.12666 7.40568 7.43892 7.52868 7.85162 8.22870 8.39541 8.91421 9.52499 11.01203 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044946 B = 0.003090 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.820513 B = 9059.279574 C = 9401.609753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.267 6.267 3 C -0.049 4.049 4 H 0.089 0.911 5 C -0.121 4.121 6 C -0.109 4.109 7 C 0.084 3.916 8 H 0.054 0.946 9 N -0.685 5.685 10 C 0.067 3.933 11 C 0.007 3.993 12 H 0.111 0.889 13 C 0.241 3.759 14 N -0.477 5.477 15 C 0.033 3.967 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.105 4.105 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.339 0.661 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 -9.813 6.507 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.178 4.178 4 H 0.107 0.893 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.027 4.027 8 H 0.072 0.928 9 N -0.316 5.316 10 C -0.063 4.063 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.154 5.154 15 C -0.006 4.006 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.144 4.144 25 H 0.096 0.904 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.056 -10.888 7.356 22.331 hybrid contribution 0.169 1.142 -0.226 1.176 sum -17.887 -9.747 7.130 21.582 Atomic orbital electron populations 1.23352 0.94590 1.06224 1.04870 1.86991 1.07135 1.12015 1.97880 1.23751 0.99962 0.92626 1.01457 0.89261 1.22778 0.99034 0.98835 0.95468 1.22525 0.92571 0.98121 1.01592 1.22354 0.92562 0.92116 0.95669 0.92792 1.60688 1.15676 1.44342 1.10870 1.22123 0.94497 0.97647 0.91996 1.19333 0.89775 0.96356 0.96055 0.87132 1.29355 0.93487 0.92269 0.92466 1.81062 1.10685 1.11233 1.12402 1.19157 0.95556 0.96756 0.89114 1.21111 1.21274 1.20124 0.94022 0.92559 1.24953 0.97042 0.96994 0.94970 1.69928 1.40759 1.42503 0.99859 0.86650 0.81502 0.82188 0.77726 1.20276 1.21186 1.20004 1.22136 0.92123 1.00722 0.99378 0.90441 0.88383 0.90671 0.91348 0.90335 0.90019 0.91096 0.84281 0.89030 0.94646 0.95771 0.94207 0.92732 0.90912 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.61 101.05 1.07 0.28 16 2 S -0.27 -2.55 21.34 -107.50 -2.29 -4.84 16 3 C -0.05 -0.43 3.42 -25.61 -0.09 -0.52 16 4 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 5 C -0.12 -1.00 6.20 -25.07 -0.16 -1.15 16 6 C -0.11 -1.04 6.50 -24.74 -0.16 -1.20 16 7 C 0.08 0.91 3.17 -66.05 -0.21 0.70 16 8 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 9 N -0.68 -8.73 6.29 -104.97 -0.66 -9.40 16 10 C 0.07 0.98 4.96 -3.82 -0.02 0.96 16 11 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 13 C 0.24 4.85 12.98 -20.74 -0.27 4.58 16 14 N -0.48 -10.38 18.54 42.18 0.78 -9.60 16 15 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 16 C -0.53 -14.02 8.60 -34.44 -0.30 -14.31 16 17 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.80 16 20 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 C -0.10 -1.04 5.97 -25.61 -0.15 -1.19 16 25 H 0.08 0.45 8.12 -51.92 -0.42 0.03 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.67 7.81 -51.93 -0.41 0.27 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.34 4.52 7.50 -39.29 -0.29 4.23 16 33 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 38 H 0.07 0.77 7.60 -51.93 -0.39 0.38 16 39 H 0.09 0.85 7.99 -51.93 -0.41 0.44 16 LS Contribution 337.30 15.07 5.08 5.08 Total: -1.00 -29.23 337.30 -8.62 -37.85 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.52 Total: -0.89 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.73 Total: -9.71 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.86 Total: -43.79 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.29 Total: -4.84 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.23 -8.62 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.307 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds