Wall clock time and date at job start Mon Mar 30 2020 06:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81397 * 103.00155 * 2 1 4 4 H 1.08996 * 110.01842 * 54.93546 * 3 2 1 5 5 C 1.54267 * 110.03046 * 293.54452 * 3 2 1 6 6 C 1.54890 * 104.19664 * 217.05966 * 5 3 2 7 7 C 1.54889 * 102.75092 * 37.94231 * 6 5 3 8 8 H 1.09004 * 110.48718 * 80.86794 * 7 6 5 9 9 N 1.46895 * 110.49094 * 203.38221 * 7 6 5 10 10 C 1.46903 * 110.99989 * 273.54912 * 9 7 6 11 11 C 1.53002 * 109.47041 * 179.97438 * 10 9 7 12 12 H 1.08990 * 109.47355 * 304.99499 * 11 10 9 13 13 C 1.47196 * 109.46985 * 64.99758 * 11 10 9 14 14 N 8.02285 * 150.81389 * 358.00229 * 2 1 3 15 15 C 1.53000 * 109.46776 * 184.99509 * 11 10 9 16 16 C 1.50703 * 109.46912 * 175.00090 * 15 11 10 17 17 H 1.07996 * 119.99751 * 0.02562 * 16 15 11 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 11 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47116 * 59.99536 * 20 18 16 22 22 H 1.48500 * 109.46585 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46730 * 299.99515 * 20 18 16 24 24 C 1.53885 * 110.07124 * 176.35725 * 3 2 1 25 25 H 1.09001 * 109.46741 * 59.99841 * 1 2 3 26 26 H 1.08995 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46813 * 300.00112 * 1 2 3 28 28 H 1.08997 * 110.48725 * 98.37914 * 5 3 2 29 29 H 1.08999 * 110.48863 * 335.73728 * 5 3 2 30 30 H 1.09002 * 110.75657 * 279.63224 * 6 5 3 31 31 H 1.09002 * 110.75994 * 156.25802 * 6 5 3 32 32 H 1.00900 * 111.00592 * 149.58928 * 9 7 6 33 33 H 1.08993 * 109.47016 * 59.99512 * 10 9 7 34 34 H 1.09001 * 109.46643 * 299.99223 * 10 9 7 35 35 H 1.09002 * 109.47398 * 295.00168 * 15 11 10 36 36 H 1.09001 * 109.47194 * 55.00349 * 15 11 10 37 37 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 38 38 H 1.09000 * 110.02862 * 0.02562 * 24 3 2 39 39 H 1.08998 * 110.02817 * 238.58709 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7328 2.2634 0.8382 5 6 1.7769 2.4126 -1.3287 6 6 2.8886 3.4448 -1.6411 7 6 4.1741 2.7115 -1.1843 8 1 4.5065 2.0110 -1.9504 9 7 5.2366 3.6787 -0.8781 10 6 5.9930 4.0301 -2.0874 11 6 7.0876 5.0375 -1.7295 12 1 6.6409 5.8976 -1.2311 13 6 8.0643 4.4018 -0.8301 14 7 8.8183 3.9099 -0.1364 15 6 7.7941 5.4978 -3.0061 16 6 8.7877 6.5794 -2.6682 17 1 8.9038 6.9054 -1.6452 18 6 9.5483 7.1527 -3.6650 19 7 9.4072 6.7553 -4.9108 20 14 10.7804 8.4928 -3.2461 21 1 11.7842 7.9610 -2.2897 22 1 11.4660 8.9397 -4.4852 23 1 10.0706 9.6427 -2.6303 24 6 3.7464 1.9575 0.0918 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.8157 2.9121 -1.2070 29 1 1.7207 1.6621 -2.1172 30 1 2.7400 4.3586 -1.0657 31 1 2.9260 3.6612 -2.7088 32 1 5.8493 3.3269 -0.1578 33 1 5.3194 4.4716 -2.8217 34 1 6.4478 3.1320 -2.5052 35 1 8.3154 4.6537 -3.4575 36 1 7.0575 5.8878 -3.7086 37 1 9.9421 7.1588 -5.6122 38 1 4.2416 0.9875 0.1360 39 1 3.9968 2.5457 0.9747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309845007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:43 Heat of formation + Delta-G solvation = -16.808750 kcal Electronic energy + Delta-G solvation = -17688.401797 eV Core-core repulsion = 14948.296195 eV Total energy + Delta-G solvation = -2740.105602 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73648 -38.29219 -35.97293 -35.06701 -32.98511 -30.06195 -29.65772 -28.94551 -27.03027 -24.21379 -23.57425 -21.59976 -21.11613 -18.54341 -18.24897 -17.61983 -16.90450 -16.62400 -16.40730 -15.83033 -15.25569 -14.85316 -14.58936 -14.45709 -14.30623 -14.23481 -14.01926 -13.90838 -13.51634 -13.08677 -12.93816 -12.75336 -12.66495 -12.48971 -12.24087 -12.14486 -12.05308 -11.91240 -11.78738 -11.60370 -11.37172 -11.11269 -10.71874 -10.54655 -9.42047 -8.66345 -8.19157 -6.27518 0.79204 1.41479 1.42910 1.50077 1.67940 1.93397 1.95463 2.41736 3.11746 3.15804 3.25116 3.48451 3.59977 4.14597 4.21113 4.34774 4.37049 4.38670 4.39344 4.42460 4.51057 4.60235 4.70566 4.74903 4.87999 4.91373 4.93043 5.03688 5.09025 5.12691 5.26723 5.43160 5.47510 5.63163 5.79578 6.06364 6.21908 6.33418 6.74914 6.87398 7.41022 8.91579 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.044946 B = 0.003090 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.820513 B = 9059.279574 C = 9401.609753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.320 6.320 3 C -0.038 4.038 4 H 0.098 0.902 5 C -0.113 4.113 6 C -0.105 4.105 7 C 0.082 3.918 8 H 0.047 0.953 9 N -0.681 5.681 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.125 0.875 13 C 0.251 3.749 14 N -0.506 5.506 15 C 0.039 3.961 16 C -0.540 4.540 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.924 5.924 20 Si 0.948 3.052 21 H -0.282 1.282 22 H -0.282 1.282 23 H -0.262 1.262 24 C -0.102 4.102 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.335 0.665 33 H 0.106 0.894 34 H 0.030 0.970 35 H -0.001 1.001 36 H 0.037 0.963 37 H 0.264 0.736 38 H 0.062 0.938 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.140 -9.295 7.085 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.093 6.093 3 C -0.167 4.167 4 H 0.117 0.883 5 C -0.153 4.153 6 C -0.145 4.145 7 C -0.029 4.029 8 H 0.065 0.935 9 N -0.311 5.311 10 C -0.051 4.051 11 C -0.002 4.002 12 H 0.143 0.857 13 C -0.065 4.065 14 N -0.183 5.183 15 C 0.000 4.000 16 C -0.578 4.578 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.774 3.226 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.187 1.187 24 C -0.141 4.141 25 H 0.106 0.894 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.124 0.876 34 H 0.048 0.952 35 H 0.017 0.983 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.700 -10.369 7.944 23.637 hybrid contribution 0.646 0.937 -0.396 1.205 sum -19.054 -9.432 7.548 22.561 Atomic orbital electron populations 1.23394 0.91336 1.07153 1.05864 1.87192 1.10817 1.13288 1.98015 1.23687 0.98952 0.91879 1.02197 0.88318 1.22726 0.99331 0.98306 0.94896 1.22498 0.92096 0.98242 1.01627 1.22420 0.92475 0.91904 0.96059 0.93547 1.60700 1.15490 1.45134 1.09804 1.21958 0.93739 0.96507 0.92933 1.19238 0.89790 0.97747 0.93453 0.85731 1.29710 0.93130 0.91563 0.92078 1.81063 1.11422 1.12405 1.13434 1.18981 0.94978 0.94945 0.91110 1.21537 1.21767 1.20676 0.93854 0.92750 1.25720 0.98895 0.99178 0.95003 1.70024 1.41868 1.43807 1.00651 0.85749 0.79306 0.80069 0.77463 1.20741 1.20735 1.18682 1.22082 0.93148 1.00001 0.98831 0.89439 0.87526 0.89630 0.89542 0.90617 0.90084 0.90930 0.84713 0.87631 0.95195 0.98286 0.94454 0.92696 0.91950 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.61 113.37 1.20 0.03 16 2 S -0.32 -5.74 21.34 -56.49 -1.21 -6.94 16 3 C -0.04 -0.61 3.42 31.32 0.11 -0.50 16 4 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 5 C -0.11 -1.60 6.20 31.67 0.20 -1.40 16 6 C -0.11 -1.80 6.50 31.89 0.21 -1.60 16 7 C 0.08 1.68 3.17 45.99 0.15 1.82 16 8 H 0.05 1.04 7.87 -2.39 -0.02 1.02 16 9 N -0.68 -16.49 6.29 -486.03 -3.06 -19.55 16 10 C 0.08 2.21 4.96 86.30 0.43 2.64 16 11 C 0.02 0.69 2.42 -12.60 -0.03 0.66 16 12 H 0.13 4.13 8.14 -2.39 -0.02 4.11 16 13 C 0.25 10.00 12.98 89.43 1.16 11.16 16 14 N -0.51 -21.90 18.54 20.01 0.37 -21.53 16 15 C 0.04 1.78 4.42 29.85 0.13 1.91 16 16 C -0.54 -28.60 8.60 25.60 0.22 -28.38 16 17 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 18 C 0.01 0.60 5.46 84.65 0.46 1.07 16 19 N -0.92 -53.10 13.29 21.45 0.28 -52.81 16 20 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 24 C -0.10 -1.92 5.97 31.32 0.19 -1.74 16 25 H 0.09 0.77 8.12 -2.39 -0.02 0.76 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.14 7.81 -2.39 -0.02 1.13 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.33 8.62 7.50 -89.69 -0.67 7.95 16 33 H 0.11 2.70 8.12 -2.39 -0.02 2.68 16 34 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 35 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 36 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 39 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 Total: -1.00 -61.66 337.30 3.18 -58.48 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.35 Total: 11.24 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.42 Total: -14.33 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -2.40 Total: -93.89 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.21 Total: -6.94 kcal Total: -61.66 3.18 -58.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.667 kcal (2) G-P(sol) polarization free energy of solvation -61.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds