Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00227 * 2 1 4 4 H 1.08996 * 110.81420 * 56.87903 * 3 2 1 5 5 C 1.54892 * 110.75377 * 293.54753 * 3 2 1 6 6 C 1.54258 * 104.19531 * 203.73970 * 5 3 2 7 7 C 1.53878 * 106.59933 * 23.61081 * 6 5 3 8 8 H 1.09000 * 110.02845 * 240.66599 * 7 6 5 9 9 N 1.46900 * 110.03228 * 119.28481 * 7 6 5 10 10 C 1.46895 * 111.00300 * 86.45677 * 9 7 6 11 11 C 1.52997 * 109.47252 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46832 * 54.99914 * 11 10 9 13 13 C 1.47194 * 109.47306 * 294.99867 * 11 10 9 14 14 N 7.88430 * 152.40913 * 338.77958 * 2 1 3 15 15 C 1.53006 * 109.47127 * 174.99593 * 11 10 9 16 16 C 1.50699 * 109.47053 * 184.99965 * 15 11 10 17 17 H 1.07995 * 119.99640 * 0.02562 * 16 15 11 18 18 C 1.37872 * 119.99593 * 179.97438 * 16 15 11 19 19 N 1.31519 * 119.99662 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00357 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47022 * 89.99750 * 20 18 16 22 22 H 1.48503 * 109.47348 * 209.99668 * 20 18 16 23 23 H 1.48495 * 109.47001 * 329.99850 * 20 18 16 24 24 C 1.54267 * 106.59763 * 359.97438 * 7 6 5 25 25 H 1.08997 * 109.46883 * 60.00359 * 1 2 3 26 26 H 1.09008 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47102 * 299.99651 * 1 2 3 28 28 H 1.08997 * 110.48700 * 85.05907 * 5 3 2 29 29 H 1.09006 * 110.48575 * 322.42258 * 5 3 2 30 30 H 1.08998 * 110.03699 * 264.32554 * 6 5 3 31 31 H 1.09003 * 110.07700 * 142.91565 * 6 5 3 32 32 H 1.00899 * 110.99668 * 210.40722 * 9 7 6 33 33 H 1.08998 * 109.47289 * 59.99712 * 10 9 7 34 34 H 1.09006 * 109.46834 * 300.00029 * 10 9 7 35 35 H 1.08997 * 109.47395 * 305.00572 * 15 11 10 36 36 H 1.09004 * 109.46579 * 64.99848 * 15 11 10 37 37 H 0.96999 * 119.99661 * 180.02562 * 19 18 16 38 38 H 1.09001 * 110.48334 * 95.06818 * 24 7 6 39 39 H 1.08996 * 110.48622 * 217.71358 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7668 2.2701 0.8533 5 6 1.7818 2.4325 -1.3278 6 6 2.6888 3.6744 -1.4479 7 6 3.9446 3.3845 -0.6072 8 1 4.0390 4.1223 0.1896 9 7 5.1394 3.4114 -1.4615 10 6 5.6641 4.7774 -1.5900 11 6 6.9055 4.7649 -2.4842 12 1 6.6601 4.3019 -3.4400 13 6 7.9757 3.9969 -1.8273 14 7 8.8017 3.4041 -1.3217 15 6 7.3789 6.2007 -2.7197 16 6 8.5254 6.1976 -3.6978 17 1 8.8805 5.2649 -4.1104 18 6 9.1201 7.3855 -4.0665 19 7 10.1204 7.3828 -4.9204 20 14 8.5053 8.9988 -3.3532 21 1 9.2477 9.3022 -2.1034 22 1 8.7242 10.0901 -4.3363 23 1 7.0554 8.8866 -3.0528 24 6 3.7565 1.9768 -0.0050 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7341 2.7287 -1.2770 29 1 1.9477 1.7562 -2.1665 30 1 2.1734 4.5524 -1.0586 31 1 2.9661 3.8359 -2.4896 32 1 5.8477 2.7834 -1.1124 33 1 5.9307 5.1585 -0.6042 34 1 4.9026 5.4189 -2.0337 35 1 6.5577 6.7923 -3.1243 36 1 7.7081 6.6342 -1.7753 37 1 10.5390 8.2186 -5.1796 38 1 4.2412 1.2267 -0.6300 39 1 4.1502 1.9406 1.0107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309845011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = 5.231628 kcal Electronic energy + Delta-G solvation = -17752.525936 eV Core-core repulsion = 15013.376076 eV Total energy + Delta-G solvation = -2739.149859 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.90874 -36.95198 -34.57936 -33.30074 -31.57955 -29.42984 -28.98329 -27.98303 -25.86432 -22.89068 -21.56764 -21.16195 -19.91598 -17.06395 -16.89717 -16.81654 -16.17083 -15.55042 -15.00386 -14.46868 -14.14198 -13.87984 -13.69573 -13.53983 -13.29520 -13.14433 -12.71571 -12.40842 -12.24295 -12.06483 -11.72043 -11.50259 -11.42883 -11.38161 -11.21835 -11.13293 -10.85728 -10.72664 -10.31477 -10.10744 -9.99451 -9.76535 -9.33798 -8.62530 -8.44407 -7.95280 -6.11297 -4.12027 1.40273 2.28780 3.25866 3.33269 3.33981 3.52072 3.56308 4.06408 4.19699 4.37334 4.45286 4.65447 4.69527 4.79639 4.82337 5.08195 5.12504 5.22813 5.23382 5.27758 5.34964 5.41407 5.45384 5.55325 5.63294 5.79997 5.84419 6.00093 6.01417 6.09349 6.21479 6.34388 6.93850 7.02729 7.12316 7.34974 7.62842 8.32945 8.41865 8.92419 9.48419 11.01859 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037585 B = 0.003318 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.798814 B = 8436.135253 C = 8856.258223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.259 6.259 3 C -0.057 4.057 4 H 0.090 0.910 5 C -0.114 4.114 6 C -0.114 4.114 7 C 0.087 3.913 8 H 0.050 0.950 9 N -0.683 5.683 10 C 0.064 3.936 11 C 0.017 3.983 12 H 0.117 0.883 13 C 0.238 3.762 14 N -0.468 5.468 15 C -0.004 4.004 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.262 1.262 24 C -0.104 4.104 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.341 0.659 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.999 -8.801 9.837 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.030 6.030 3 C -0.186 4.186 4 H 0.109 0.891 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.024 4.024 8 H 0.068 0.932 9 N -0.315 5.315 10 C -0.066 4.066 11 C -0.005 4.005 12 H 0.135 0.865 13 C -0.079 4.079 14 N -0.144 5.144 15 C -0.043 4.043 16 C -0.566 4.566 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.143 4.143 25 H 0.096 0.904 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.160 0.840 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.322 -10.467 9.940 24.927 hybrid contribution -0.853 2.337 0.982 2.674 sum -21.175 -8.131 10.922 25.175 Atomic orbital electron populations 1.23357 0.94560 1.06291 1.04853 1.86936 1.07038 1.11176 1.97890 1.24125 1.00031 0.93043 1.01401 0.89141 1.22691 0.99045 0.97617 0.95975 1.22229 0.94301 0.96724 1.02137 1.22132 0.91569 0.95458 0.93285 0.93168 1.60736 1.08532 1.09172 1.53050 1.22157 0.96093 0.89863 0.98465 1.19072 0.86595 0.97142 0.97708 0.86547 1.29146 0.93955 0.92215 0.92614 1.81033 1.10293 1.11993 1.11129 1.19632 0.97939 0.89009 0.97703 1.21034 1.15069 0.95250 1.25233 0.90767 1.24998 0.94501 0.99113 0.94542 1.69910 1.23229 1.27306 1.33059 0.86809 0.79989 0.83590 0.79103 1.20330 1.21244 1.18695 1.22384 0.92715 0.97530 1.01685 0.90403 0.88301 0.90720 0.91824 0.89973 0.91966 0.89509 0.84042 0.94682 0.89060 0.94293 0.96323 0.92559 0.89389 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.63 101.05 1.07 0.30 16 2 S -0.26 -2.43 21.82 -107.50 -2.35 -4.77 16 3 C -0.06 -0.48 3.42 -24.75 -0.08 -0.57 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.11 -0.93 6.16 -25.08 -0.15 -1.08 16 6 C -0.11 -1.03 6.48 -25.62 -0.17 -1.19 16 7 C 0.09 0.87 3.24 -66.59 -0.22 0.65 16 8 H 0.05 0.50 7.83 -51.93 -0.41 0.09 16 9 N -0.68 -8.27 6.15 -105.54 -0.65 -8.92 16 10 C 0.06 0.86 4.94 -3.83 -0.02 0.84 16 11 C 0.02 0.29 2.42 -93.41 -0.23 0.06 16 12 H 0.12 1.99 8.14 -51.93 -0.42 1.56 16 13 C 0.24 4.71 12.97 -20.78 -0.27 4.44 16 14 N -0.47 -10.15 18.53 42.13 0.78 -9.37 16 15 C 0.00 -0.08 3.49 -27.88 -0.10 -0.18 16 16 C -0.53 -14.18 9.15 -34.44 -0.32 -14.49 16 17 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 20 Si 0.88 20.56 27.47 -169.99 -4.67 15.89 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 24 C -0.10 -0.99 5.71 -25.09 -0.14 -1.13 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 32 H 0.34 4.39 7.43 -39.29 -0.29 4.10 16 33 H 0.03 0.46 8.07 -51.93 -0.42 0.05 16 34 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.04 0.78 7.20 -51.93 -0.37 0.40 16 36 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.09 0.95 7.88 -51.93 -0.41 0.54 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 334.10 15.07 5.03 5.03 Total: -1.00 -30.45 334.10 -8.29 -38.75 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.50 Total: 0.17 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.71 Total: -10.47 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.91 Total: -44.61 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.35 Total: -4.77 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.45 -8.29 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.978 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds