Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00227 * 2 1 4 4 H 1.08996 * 110.81420 * 56.87903 * 3 2 1 5 5 C 1.54892 * 110.75377 * 293.54753 * 3 2 1 6 6 C 1.54258 * 104.19531 * 203.73970 * 5 3 2 7 7 C 1.53878 * 106.59933 * 23.61081 * 6 5 3 8 8 H 1.09000 * 110.02845 * 240.66599 * 7 6 5 9 9 N 1.46900 * 110.03228 * 119.28481 * 7 6 5 10 10 C 1.46895 * 111.00300 * 86.45677 * 9 7 6 11 11 C 1.52997 * 109.47252 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.46832 * 54.99914 * 11 10 9 13 13 C 1.47194 * 109.47306 * 294.99867 * 11 10 9 14 14 N 7.88430 * 152.40913 * 338.77958 * 2 1 3 15 15 C 1.53006 * 109.47127 * 174.99593 * 11 10 9 16 16 C 1.50699 * 109.47053 * 184.99965 * 15 11 10 17 17 H 1.07995 * 119.99640 * 0.02562 * 16 15 11 18 18 C 1.37872 * 119.99593 * 179.97438 * 16 15 11 19 19 N 1.31519 * 119.99662 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00357 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47022 * 89.99750 * 20 18 16 22 22 H 1.48503 * 109.47348 * 209.99668 * 20 18 16 23 23 H 1.48495 * 109.47001 * 329.99850 * 20 18 16 24 24 C 1.54267 * 106.59763 * 359.97438 * 7 6 5 25 25 H 1.08997 * 109.46883 * 60.00359 * 1 2 3 26 26 H 1.09008 * 109.47200 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47102 * 299.99651 * 1 2 3 28 28 H 1.08997 * 110.48700 * 85.05907 * 5 3 2 29 29 H 1.09006 * 110.48575 * 322.42258 * 5 3 2 30 30 H 1.08998 * 110.03699 * 264.32554 * 6 5 3 31 31 H 1.09003 * 110.07700 * 142.91565 * 6 5 3 32 32 H 1.00899 * 110.99668 * 210.40722 * 9 7 6 33 33 H 1.08998 * 109.47289 * 59.99712 * 10 9 7 34 34 H 1.09006 * 109.46834 * 300.00029 * 10 9 7 35 35 H 1.08997 * 109.47395 * 305.00572 * 15 11 10 36 36 H 1.09004 * 109.46579 * 64.99848 * 15 11 10 37 37 H 0.96999 * 119.99661 * 180.02562 * 19 18 16 38 38 H 1.09001 * 110.48334 * 95.06818 * 24 7 6 39 39 H 1.08996 * 110.48622 * 217.71358 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7668 2.2701 0.8533 5 6 1.7818 2.4325 -1.3278 6 6 2.6888 3.6744 -1.4479 7 6 3.9446 3.3845 -0.6072 8 1 4.0390 4.1223 0.1896 9 7 5.1394 3.4114 -1.4615 10 6 5.6641 4.7774 -1.5900 11 6 6.9055 4.7649 -2.4842 12 1 6.6601 4.3019 -3.4400 13 6 7.9757 3.9969 -1.8273 14 7 8.8017 3.4041 -1.3217 15 6 7.3789 6.2007 -2.7197 16 6 8.5254 6.1976 -3.6978 17 1 8.8805 5.2649 -4.1104 18 6 9.1201 7.3855 -4.0665 19 7 10.1204 7.3828 -4.9204 20 14 8.5053 8.9988 -3.3532 21 1 9.2477 9.3022 -2.1034 22 1 8.7242 10.0901 -4.3363 23 1 7.0554 8.8866 -3.0528 24 6 3.7565 1.9768 -0.0050 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7341 2.7287 -1.2770 29 1 1.9477 1.7562 -2.1665 30 1 2.1734 4.5524 -1.0586 31 1 2.9661 3.8359 -2.4896 32 1 5.8477 2.7834 -1.1124 33 1 5.9307 5.1585 -0.6042 34 1 4.9026 5.4189 -2.0337 35 1 6.5577 6.7923 -3.1243 36 1 7.7081 6.6342 -1.7753 37 1 10.5390 8.2186 -5.1796 38 1 4.2412 1.2267 -0.6300 39 1 4.1502 1.9406 1.0107 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309845011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = -13.435024 kcal Electronic energy + Delta-G solvation = -17753.335382 eV Core-core repulsion = 15013.376076 eV Total energy + Delta-G solvation = -2739.959306 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77585 -38.32106 -35.98166 -34.99018 -33.19789 -30.08385 -29.63913 -29.22583 -27.10289 -24.07989 -23.33025 -21.91211 -20.68204 -18.91718 -18.31823 -17.73054 -16.93141 -16.64226 -16.33725 -15.59451 -15.18546 -15.06768 -14.70799 -14.44603 -14.37088 -14.17970 -14.04125 -13.96023 -13.56578 -13.21236 -12.92897 -12.75380 -12.61240 -12.48733 -12.24052 -12.05243 -11.93449 -11.82578 -11.70297 -11.47120 -11.42293 -11.24661 -10.74547 -10.73250 -9.36773 -8.66240 -8.24162 -6.29996 0.78484 1.43940 1.45144 1.56473 1.69770 1.93889 1.95118 2.41692 3.11841 3.13977 3.23765 3.50032 3.73230 3.97302 4.11705 4.35968 4.37818 4.39281 4.42929 4.45932 4.54225 4.57276 4.61772 4.76005 4.85278 4.87864 4.91995 5.02972 5.12502 5.14216 5.26580 5.35484 5.40097 5.47561 5.64707 6.13628 6.27395 6.35373 6.74411 6.80707 7.34481 8.92930 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037585 B = 0.003318 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.798814 B = 8436.135253 C = 8856.258223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.317 6.317 3 C -0.044 4.044 4 H 0.103 0.897 5 C -0.108 4.108 6 C -0.111 4.111 7 C 0.087 3.913 8 H 0.059 0.941 9 N -0.689 5.689 10 C 0.076 3.924 11 C 0.023 3.977 12 H 0.118 0.882 13 C 0.248 3.752 14 N -0.508 5.508 15 C -0.002 4.002 16 C -0.531 4.531 17 H 0.027 0.973 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.949 3.051 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.220 1.220 24 C -0.104 4.104 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.334 0.666 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.070 0.930 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.339 -7.362 11.333 28.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.089 6.089 3 C -0.172 4.172 4 H 0.122 0.878 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.024 4.024 8 H 0.077 0.923 9 N -0.320 5.320 10 C -0.054 4.054 11 C 0.001 3.999 12 H 0.136 0.864 13 C -0.068 4.068 14 N -0.185 5.185 15 C -0.041 4.041 16 C -0.570 4.570 17 H 0.045 0.955 18 C -0.196 4.196 19 N -0.596 5.596 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.143 1.143 24 C -0.142 4.142 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.085 0.915 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.701 -9.051 11.449 27.834 hybrid contribution 0.213 1.759 0.472 1.833 sum -23.488 -7.293 11.921 27.331 Atomic orbital electron populations 1.23391 0.91235 1.07185 1.05852 1.87163 1.10824 1.12927 1.98030 1.24064 0.99113 0.91971 1.02099 0.87849 1.22637 0.99979 0.96957 0.95183 1.22216 0.93884 0.97618 1.01346 1.22212 0.90943 0.95778 0.93419 0.92257 1.60748 1.08918 1.08337 1.53998 1.22049 0.94463 0.90967 0.97910 1.19133 0.87436 0.94589 0.98734 0.86392 1.29738 0.93685 0.91623 0.91727 1.81030 1.11502 1.13207 1.12762 1.19586 0.96519 0.91722 0.96251 1.21421 1.16502 0.93369 1.25658 0.95457 1.26077 0.94668 1.03831 0.94996 1.70099 1.25540 1.28403 1.35601 0.85678 0.81697 0.77658 0.77750 1.20290 1.21628 1.14260 1.22341 0.93623 0.96919 1.01362 0.89523 0.87521 0.89515 0.90016 0.91343 0.90255 0.90507 0.84831 0.93978 0.86757 0.91533 0.95643 0.92680 0.91184 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.63 113.37 1.21 0.08 16 2 S -0.32 -5.64 21.82 -56.49 -1.23 -6.87 16 3 C -0.04 -0.65 3.42 31.88 0.11 -0.54 16 4 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.11 -1.49 6.16 31.67 0.20 -1.30 16 6 C -0.11 -1.65 6.48 31.32 0.20 -1.44 16 7 C 0.09 1.52 3.24 45.64 0.15 1.67 16 8 H 0.06 0.96 7.83 -2.39 -0.02 0.94 16 9 N -0.69 -15.34 6.15 -487.84 -3.00 -18.34 16 10 C 0.08 1.80 4.94 86.30 0.43 2.22 16 11 C 0.02 0.76 2.42 -12.60 -0.03 0.73 16 12 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 13 C 0.25 9.80 12.97 89.45 1.16 10.96 16 14 N -0.51 -22.32 18.53 20.00 0.37 -21.95 16 15 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 16 C -0.53 -28.73 9.15 25.60 0.23 -28.49 16 17 H 0.03 1.68 7.84 -2.91 -0.02 1.65 16 18 C 0.00 0.04 5.47 84.65 0.46 0.50 16 19 N -0.96 -59.47 13.96 21.45 0.30 -59.17 16 20 Si 0.95 41.23 27.47 68.60 1.88 43.11 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.22 -8.03 6.54 99.48 0.65 -7.38 16 24 C -0.10 -1.83 5.71 31.66 0.18 -1.65 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.15 8.04 -2.38 -0.02 1.13 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.33 7.92 -2.39 -0.02 1.31 16 32 H 0.33 8.29 7.43 -89.69 -0.67 7.62 16 33 H 0.04 0.96 8.07 -2.39 -0.02 0.94 16 34 H 0.11 2.24 8.10 -2.38 -0.02 2.22 16 35 H 0.07 2.35 7.20 -2.39 -0.02 2.33 16 36 H 0.03 1.00 7.57 -2.39 -0.02 0.98 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.07 1.50 7.88 -2.39 -0.02 1.48 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.34 334.10 3.02 -65.32 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.30 Total: 15.14 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 4.40 Total: -17.23 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -2.33 Total: -99.46 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.88 Total: 43.11 kcal Atomic # 16 Polarization: -5.64 SS G_CDS: -1.23 Total: -6.87 kcal Total: -68.34 3.02 -65.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309845011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.884 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds