Wall clock time and date at job start Mon Mar 30 2020 06:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 103.00126 * 2 1 4 4 C 1.53003 * 112.85106 * 65.60469 * 3 2 1 5 5 N 1.46902 * 109.46745 * 45.55776 * 4 3 2 6 6 C 1.46904 * 110.99746 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46813 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47225 * 305.00088 * 7 6 5 9 9 C 1.47202 * 109.46980 * 65.00067 * 7 6 5 10 10 N 5.95126 * 120.04062 * 75.35263 * 2 1 3 11 11 C 1.53005 * 109.46935 * 185.00008 * 7 6 5 12 12 C 1.50695 * 109.47105 * 175.00263 * 11 7 6 13 13 H 1.08001 * 120.00263 * 359.97438 * 12 11 7 14 14 C 1.37877 * 119.99871 * 180.02562 * 12 11 7 15 15 N 1.31509 * 119.99995 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47212 * 60.00267 * 16 14 12 18 18 H 1.48500 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47244 * 300.00034 * 16 14 12 20 20 C 1.53782 * 113.69287 * 196.87763 * 3 2 1 21 21 C 1.53783 * 87.08309 * 139.99015 * 20 3 2 22 22 C 1.53782 * 87.08143 * 334.56497 * 21 20 3 23 23 H 1.08993 * 109.46730 * 184.85528 * 1 2 3 24 24 H 1.08996 * 109.47054 * 304.85384 * 1 2 3 25 25 H 1.09000 * 109.46979 * 64.84973 * 1 2 3 26 26 H 1.08996 * 109.47054 * 285.56377 * 4 3 2 27 27 H 1.08993 * 109.47253 * 165.55925 * 4 3 2 28 28 H 1.00898 * 111.00057 * 56.05094 * 5 4 3 29 29 H 1.09002 * 109.46672 * 60.00244 * 6 5 4 30 30 H 1.08997 * 109.46823 * 300.00254 * 6 5 4 31 31 H 1.08993 * 109.47070 * 295.00327 * 11 7 6 32 32 H 1.08996 * 109.46924 * 54.99929 * 11 7 6 33 33 H 0.97002 * 119.99500 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.61188 * 254.54436 * 20 3 2 35 35 H 1.09001 * 113.61471 * 25.43837 * 20 3 2 36 36 H 1.08995 * 113.61546 * 220.01890 * 21 20 3 37 37 H 1.09005 * 113.68753 * 89.12668 * 21 20 3 38 38 H 1.08995 * 113.61486 * 270.88540 * 22 21 20 39 39 H 1.09004 * 113.61213 * 139.97353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 1.7884 2.4775 1.2841 5 7 2.1745 1.6663 2.4463 6 6 1.7736 2.3186 3.7001 7 6 2.1921 1.4462 4.8853 8 1 1.7776 0.4455 4.7641 9 6 3.6609 1.3656 4.9406 10 7 4.7933 1.3027 4.9844 11 6 1.6660 2.0625 6.1831 12 6 1.9716 1.1420 7.3364 13 1 2.4889 0.2102 7.1612 14 6 1.5897 1.4887 8.6151 15 7 0.9584 2.6225 8.8281 16 14 1.9679 0.3472 10.0445 17 1 3.4366 0.1541 10.1487 18 1 1.4562 0.9448 11.3040 19 1 1.3110 -0.9651 9.8173 20 6 3.6742 2.0665 -0.4088 21 6 3.1226 3.2671 -1.1957 22 6 1.7933 2.4987 -1.2832 23 1 -0.3632 -1.0239 0.0870 24 1 -0.3633 0.5873 0.8433 25 1 -0.3633 0.4368 -0.9302 26 1 0.7067 2.6113 1.2776 27 1 2.2746 3.4512 1.3429 28 1 3.1649 1.4737 2.4400 29 1 0.6918 2.4516 3.7106 30 1 2.2601 3.2910 3.7754 31 1 2.1481 3.0258 6.3495 32 1 0.5879 2.2042 6.1070 33 1 0.6901 2.8665 9.7278 34 1 4.3138 2.3490 0.4273 35 1 4.1172 1.2966 -1.0407 36 1 3.6055 3.4153 -2.1615 37 1 3.0594 4.1835 -0.6089 38 1 1.7222 1.8471 -2.1540 39 1 0.9145 3.1303 -1.1528 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309866135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:18 Heat of formation + Delta-G solvation = 32.475975 kcal Electronic energy + Delta-G solvation = -18052.610172 eV Core-core repulsion = 15314.641716 eV Total energy + Delta-G solvation = -2737.968456 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.50071 -37.20230 -34.92435 -33.48992 -31.57131 -29.04023 -27.93019 -26.01179 -25.69772 -23.58536 -22.43058 -21.74461 -19.10121 -17.16720 -16.69657 -16.49088 -15.70207 -15.07041 -14.79172 -14.65237 -14.30247 -13.86264 -13.42078 -13.24417 -13.08517 -12.85259 -12.72272 -12.51090 -12.33896 -12.05474 -11.88253 -11.61064 -11.25352 -11.09402 -11.00586 -10.85240 -10.69736 -10.53295 -10.49023 -10.24116 -9.68727 -9.52751 -9.23398 -8.44527 -8.31157 -7.40236 -6.08819 -4.11801 1.80237 2.62462 3.32354 3.36173 3.40211 3.59821 3.66086 4.00691 4.24296 4.36281 4.42830 4.50561 4.67402 4.83232 5.09474 5.16918 5.23123 5.29282 5.31952 5.41477 5.46819 5.51837 5.58046 5.61612 5.69218 5.73764 5.79084 5.83800 6.06938 6.14963 6.37474 6.56155 7.08733 7.42934 7.45665 7.53902 7.86380 8.24221 8.43007 8.92631 9.53637 11.02086 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.003865 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.163730 B = 7243.049300 C = 7434.049454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.224 6.224 3 C -0.055 4.055 4 C 0.080 3.920 5 N -0.676 5.676 6 C 0.067 3.933 7 C 0.008 3.992 8 H 0.112 0.888 9 C 0.242 3.758 10 N -0.477 5.477 11 C 0.033 3.967 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.124 4.124 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.341 0.659 29 H 0.089 0.911 30 H 0.032 0.968 31 H 0.023 0.977 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 0.899 -21.119 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.005 5.995 3 C -0.166 4.166 4 C -0.051 4.051 5 N -0.307 5.307 6 C -0.063 4.063 7 C -0.014 4.014 8 H 0.130 0.870 9 C -0.075 4.075 10 N -0.154 5.154 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.149 4.149 21 C -0.176 4.176 22 C -0.164 4.164 23 H 0.113 0.887 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.553 -0.415 -20.922 20.933 hybrid contribution -0.495 1.174 1.125 1.700 sum -1.048 0.760 -19.796 19.839 Atomic orbital electron populations 1.23269 0.94976 1.06027 1.04424 1.86565 1.06828 1.08829 1.97252 1.24295 1.00597 0.94426 0.97267 1.21785 1.00804 0.93856 0.88675 1.60666 1.22784 1.46309 1.00945 1.22077 1.01639 0.95052 0.87491 1.19306 0.81600 1.02690 0.97787 0.87042 1.29264 0.95249 0.91848 0.91098 1.80985 1.13569 1.10148 1.10695 1.19151 0.97179 0.96307 0.87915 1.21116 1.37956 1.05415 0.91957 0.92526 1.24945 0.94865 0.95198 0.98910 1.69928 1.39329 1.22101 1.21777 0.86654 0.78830 0.81066 0.81543 1.20253 1.21205 1.19992 1.22805 0.93591 0.98140 1.00380 1.22830 0.96734 0.97225 1.00784 1.23222 0.98057 0.98717 0.96376 0.88714 0.90078 0.91422 0.90594 0.94249 0.84098 0.89258 0.94938 0.95838 0.94289 0.92767 0.90852 0.89056 0.90878 0.89884 0.88933 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.62 101.05 1.07 -0.05 16 2 S -0.22 -2.62 21.05 -107.50 -2.26 -4.88 16 3 C -0.06 -0.55 0.95 -89.80 -0.09 -0.64 16 4 C 0.08 0.87 4.99 -3.82 -0.02 0.85 16 5 N -0.68 -8.97 5.73 -113.78 -0.65 -9.63 16 6 C 0.07 0.99 5.12 -3.82 -0.02 0.97 16 7 C 0.01 0.15 2.42 -93.40 -0.23 -0.08 16 8 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 9 C 0.24 4.96 12.97 -20.79 -0.27 4.69 16 10 N -0.48 -10.54 18.53 42.12 0.78 -9.76 16 11 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 12 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 13 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.63 13.29 55.43 0.74 -24.90 16 16 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.11 -1.04 7.22 -25.92 -0.19 -1.23 16 21 C -0.14 -1.04 7.73 -25.92 -0.20 -1.24 16 22 C -0.12 -0.98 7.20 -25.91 -0.19 -1.17 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.80 7.87 -51.93 -0.41 0.40 16 25 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.08 0.79 7.88 -51.93 -0.41 0.38 16 27 H 0.04 0.42 7.37 -51.93 -0.38 0.03 16 28 H 0.34 4.91 7.80 -39.29 -0.31 4.60 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 38 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 339.22 15.07 5.11 5.11 Total: -1.00 -29.46 339.22 -8.45 -37.91 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -6.50 Total: -0.29 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.64 Total: -10.00 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.86 Total: -44.28 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.26 Total: -4.88 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.46 -8.45 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309866135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.391 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds