Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81402 * 103.00126 * 2 1 4 4 C 1.53003 * 112.85106 * 65.60469 * 3 2 1 5 5 N 1.46902 * 109.46745 * 45.55776 * 4 3 2 6 6 C 1.46904 * 110.99746 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46813 * 180.02562 * 6 5 4 8 8 H 1.08995 * 109.47225 * 305.00088 * 7 6 5 9 9 C 1.47202 * 109.46980 * 65.00067 * 7 6 5 10 10 N 5.95126 * 120.04062 * 75.35263 * 2 1 3 11 11 C 1.53005 * 109.46935 * 185.00008 * 7 6 5 12 12 C 1.50695 * 109.47105 * 175.00263 * 11 7 6 13 13 H 1.08001 * 120.00263 * 359.97438 * 12 11 7 14 14 C 1.37877 * 119.99871 * 180.02562 * 12 11 7 15 15 N 1.31509 * 119.99995 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99775 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47212 * 60.00267 * 16 14 12 18 18 H 1.48500 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47244 * 300.00034 * 16 14 12 20 20 C 1.53782 * 113.69287 * 196.87763 * 3 2 1 21 21 C 1.53783 * 87.08309 * 139.99015 * 20 3 2 22 22 C 1.53782 * 87.08143 * 334.56497 * 21 20 3 23 23 H 1.08993 * 109.46730 * 184.85528 * 1 2 3 24 24 H 1.08996 * 109.47054 * 304.85384 * 1 2 3 25 25 H 1.09000 * 109.46979 * 64.84973 * 1 2 3 26 26 H 1.08996 * 109.47054 * 285.56377 * 4 3 2 27 27 H 1.08993 * 109.47253 * 165.55925 * 4 3 2 28 28 H 1.00898 * 111.00057 * 56.05094 * 5 4 3 29 29 H 1.09002 * 109.46672 * 60.00244 * 6 5 4 30 30 H 1.08997 * 109.46823 * 300.00254 * 6 5 4 31 31 H 1.08993 * 109.47070 * 295.00327 * 11 7 6 32 32 H 1.08996 * 109.46924 * 54.99929 * 11 7 6 33 33 H 0.97002 * 119.99500 * 180.02562 * 15 14 12 34 34 H 1.09001 * 113.61188 * 254.54436 * 20 3 2 35 35 H 1.09001 * 113.61471 * 25.43837 * 20 3 2 36 36 H 1.08995 * 113.61546 * 220.01890 * 21 20 3 37 37 H 1.09005 * 113.68753 * 89.12668 * 21 20 3 38 38 H 1.08995 * 113.61486 * 270.88540 * 22 21 20 39 39 H 1.09004 * 113.61213 * 139.97353 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 1.7884 2.4775 1.2841 5 7 2.1745 1.6663 2.4463 6 6 1.7736 2.3186 3.7001 7 6 2.1921 1.4462 4.8853 8 1 1.7776 0.4455 4.7641 9 6 3.6609 1.3656 4.9406 10 7 4.7933 1.3027 4.9844 11 6 1.6660 2.0625 6.1831 12 6 1.9716 1.1420 7.3364 13 1 2.4889 0.2102 7.1612 14 6 1.5897 1.4887 8.6151 15 7 0.9584 2.6225 8.8281 16 14 1.9679 0.3472 10.0445 17 1 3.4366 0.1541 10.1487 18 1 1.4562 0.9448 11.3040 19 1 1.3110 -0.9651 9.8173 20 6 3.6742 2.0665 -0.4088 21 6 3.1226 3.2671 -1.1957 22 6 1.7933 2.4987 -1.2832 23 1 -0.3632 -1.0239 0.0870 24 1 -0.3633 0.5873 0.8433 25 1 -0.3633 0.4368 -0.9302 26 1 0.7067 2.6113 1.2776 27 1 2.2746 3.4512 1.3429 28 1 3.1649 1.4737 2.4400 29 1 0.6918 2.4516 3.7106 30 1 2.2601 3.2910 3.7754 31 1 2.1481 3.0258 6.3495 32 1 0.5879 2.2042 6.1070 33 1 0.6901 2.8665 9.7278 34 1 4.3138 2.3490 0.4273 35 1 4.1172 1.2966 -1.0407 36 1 3.6055 3.4153 -2.1615 37 1 3.0594 4.1835 -0.6089 38 1 1.7222 1.8471 -2.1540 39 1 0.9145 3.1303 -1.1528 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309866135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = 16.200294 kcal Electronic energy + Delta-G solvation = -18053.315938 eV Core-core repulsion = 15314.641716 eV Total energy + Delta-G solvation = -2738.674222 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26946 -38.67240 -36.31870 -35.32602 -33.25851 -29.87980 -29.18721 -27.24031 -26.57963 -24.67342 -23.59234 -23.51204 -19.85151 -18.53883 -18.24023 -17.94822 -16.73453 -16.56571 -15.92220 -15.68904 -15.44801 -14.93405 -14.74897 -14.32611 -14.23429 -14.01945 -13.93550 -13.82303 -13.51723 -13.36346 -13.08074 -13.01354 -12.76629 -12.56032 -12.46169 -12.34589 -11.98768 -11.77986 -11.58436 -11.37051 -11.21451 -11.09607 -10.55008 -10.48867 -9.35904 -8.30069 -8.19721 -6.27802 1.00934 1.41102 1.42176 1.49558 1.84937 1.94621 1.97540 2.41422 3.07379 3.15457 3.25867 3.51115 3.62680 3.81719 3.85542 4.15566 4.38086 4.42876 4.48202 4.50567 4.58112 4.65583 4.75231 4.79301 4.82479 4.95469 4.96511 4.99195 5.05469 5.06885 5.15002 5.42711 5.46736 5.62445 5.79055 6.01238 6.21571 6.31562 6.75342 6.86889 7.40705 8.90998 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.003865 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.163730 B = 7243.049300 C = 7434.049454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.280 6.280 3 C -0.050 4.050 4 C 0.081 3.919 5 N -0.677 5.677 6 C 0.080 3.920 7 C 0.020 3.980 8 H 0.120 0.880 9 C 0.252 3.748 10 N -0.506 5.506 11 C 0.040 3.960 12 C -0.541 4.541 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.947 3.053 17 H -0.281 1.281 18 H -0.281 1.281 19 H -0.264 1.264 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.114 4.114 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.333 0.667 29 H 0.105 0.895 30 H 0.032 0.968 31 H 0.000 1.000 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 0.977 -22.257 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.051 6.051 3 C -0.160 4.160 4 C -0.050 4.050 5 N -0.308 5.308 6 C -0.050 4.050 7 C -0.001 4.001 8 H 0.138 0.862 9 C -0.064 4.064 10 N -0.183 5.183 11 C 0.001 3.999 12 C -0.579 4.579 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.563 5.563 16 Si 0.773 3.227 17 H -0.207 1.207 18 H -0.206 1.206 19 H -0.188 1.188 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.154 4.154 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.151 0.849 29 H 0.123 0.877 30 H 0.050 0.950 31 H 0.019 0.981 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.310 -0.344 -22.076 22.118 hybrid contribution -0.253 1.147 1.456 1.871 sum -1.563 0.803 -20.620 20.695 Atomic orbital electron populations 1.23255 0.92649 1.06397 1.05136 1.86771 1.09540 1.11362 1.97380 1.24346 1.01059 0.92770 0.97812 1.21854 1.01403 0.93805 0.87963 1.60655 1.22227 1.46797 1.01081 1.21909 1.02410 0.93990 0.86723 1.19207 0.80152 1.03489 0.97289 0.86246 1.29635 0.95613 0.90947 0.90231 1.80983 1.14522 1.11205 1.11608 1.18970 0.96864 0.94804 0.89253 1.21528 1.37340 1.05721 0.93302 0.92950 1.25687 0.94957 0.96534 1.01409 1.70019 1.40431 1.23489 1.22333 0.85770 0.78236 0.79791 0.78921 1.20714 1.20603 1.18835 1.22849 0.93248 0.99102 1.00312 1.22808 0.96247 0.96478 1.01131 1.23190 0.98639 0.98406 0.95133 0.88381 0.90448 0.89714 0.89660 0.93540 0.84935 0.87719 0.94981 0.98126 0.94514 0.92688 0.92061 0.89367 0.89569 0.89448 0.88546 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 10.62 113.37 1.20 -0.61 16 2 S -0.28 -6.25 21.05 -56.49 -1.19 -7.44 16 3 C -0.05 -0.90 0.95 -10.26 -0.01 -0.91 16 4 C 0.08 1.59 4.99 86.30 0.43 2.02 16 5 N -0.68 -17.06 5.73 -513.88 -2.95 -20.01 16 6 C 0.08 2.23 5.12 86.30 0.44 2.68 16 7 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 8 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 9 C 0.25 10.25 12.97 89.45 1.16 11.41 16 10 N -0.51 -22.31 18.53 19.99 0.37 -21.94 16 11 C 0.04 1.85 4.42 29.85 0.13 1.98 16 12 C -0.54 -28.92 8.60 25.60 0.22 -28.70 16 13 H 0.05 2.79 7.59 -2.91 -0.02 2.76 16 14 C 0.01 0.73 5.46 84.66 0.46 1.19 16 15 N -0.92 -53.08 13.29 21.45 0.28 -52.79 16 16 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 20 C -0.12 -2.06 7.22 31.12 0.22 -1.84 16 21 C -0.13 -1.65 7.73 31.12 0.24 -1.41 16 22 C -0.11 -1.51 7.20 31.12 0.22 -1.29 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.38 7.87 -2.39 -0.02 1.36 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.55 7.88 -2.39 -0.02 1.53 16 27 H 0.05 0.88 7.37 -2.39 -0.02 0.86 16 28 H 0.33 9.35 7.80 -89.70 -0.70 8.65 16 29 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 34 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.08 7.70 -2.38 -0.02 1.06 16 38 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.08 0.94 8.10 -2.38 -0.02 0.92 16 Total: -1.00 -62.16 339.22 3.57 -58.59 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.32 Total: 12.62 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.70 Total: -14.77 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.29 Total: -94.75 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -6.25 SS G_CDS: -1.19 Total: -7.44 kcal Total: -62.16 3.57 -58.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309866135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.794 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds