Wall clock time and date at job start Mon Mar 30 2020 06:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 C 1.53000 * 109.47575 * 175.27113 * 3 2 1 5 5 C 1.52999 * 109.47222 * 294.45632 * 4 3 2 6 6 C 1.50705 * 109.46941 * 295.27262 * 3 2 1 7 7 N 1.29019 * 124.91544 * 299.97280 * 6 3 2 8 8 C 1.31785 * 117.12754 * 180.02562 * 7 6 3 9 9 C 1.33643 * 114.49301 * 359.97438 * 8 7 6 10 10 C 1.50699 * 126.03211 * 179.74126 * 9 8 7 11 11 N 1.46905 * 109.47060 * 90.02602 * 10 9 8 12 12 C 1.46904 * 110.99777 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47096 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00052 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00478 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99463 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00412 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47243 * 90.00078 * 17 15 13 19 19 H 1.48500 * 109.47134 * 210.00165 * 17 15 13 20 20 H 1.48506 * 109.47012 * 330.00182 * 17 15 13 21 21 S 1.70979 * 124.91616 * 119.97579 * 6 3 2 22 22 H 1.08998 * 109.47339 * 306.73961 * 1 2 3 23 23 H 1.09004 * 109.46850 * 66.74701 * 1 2 3 24 24 H 1.09005 * 109.47407 * 186.74094 * 1 2 3 25 25 H 1.09006 * 109.47298 * 239.99707 * 2 1 3 26 26 H 1.09001 * 109.47154 * 120.00087 * 2 1 3 27 27 H 1.08999 * 109.47100 * 55.27340 * 3 2 1 28 28 H 1.08999 * 109.47018 * 54.44955 * 4 3 2 29 29 H 1.08997 * 109.47694 * 174.45421 * 4 3 2 30 30 H 1.08999 * 109.46856 * 306.20692 * 5 4 3 31 31 H 1.08999 * 109.47117 * 66.19854 * 5 4 3 32 32 H 1.08999 * 109.47758 * 186.20495 * 5 4 3 33 33 H 1.07995 * 122.75545 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47097 * 210.02353 * 10 9 8 35 35 H 1.08999 * 109.47510 * 330.02887 * 10 9 8 36 36 H 1.00894 * 111.00002 * 56.04704 * 11 10 9 37 37 H 1.09004 * 109.46650 * 299.99856 * 12 11 10 38 38 H 1.08994 * 109.47545 * 60.00063 * 12 11 10 39 39 H 0.97004 * 119.99541 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4442 0.1189 5 6 3.9712 0.8839 1.4836 6 6 1.6355 2.1182 -1.2849 7 7 1.9816 1.7284 -2.4650 8 6 1.5398 2.4359 -3.4853 9 6 0.7780 3.4805 -3.1467 10 6 0.1447 4.4615 -4.0993 11 7 -1.1901 3.9812 -4.4812 12 6 -1.8389 4.9143 -5.4119 13 6 -3.2029 4.3897 -5.7799 14 1 -3.5527 3.4562 -5.3642 15 6 -4.0045 5.1013 -6.6471 16 7 -3.5784 6.2378 -7.1537 17 14 -5.6949 4.4506 -7.1037 18 1 -6.7010 4.9687 -6.1422 19 1 -6.0441 4.8994 -8.4755 20 1 -5.6833 2.9664 -7.0563 21 16 0.6516 3.5126 -1.3896 22 1 -0.3634 0.6147 0.8235 23 1 -0.3633 0.4057 -0.9442 24 1 -0.3634 -1.0206 0.1206 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6092 1.9802 0.8446 28 1 3.9919 0.8243 -0.6697 29 1 3.9364 2.4643 0.0201 30 1 3.4566 1.4355 2.2704 31 1 3.6972 -0.1696 1.5398 32 1 5.0486 0.9866 1.6128 33 1 1.7733 2.1912 -4.5109 34 1 0.0559 5.4336 -3.6139 35 1 0.7656 4.5556 -4.9902 36 1 -1.7646 3.8243 -3.6668 37 1 -1.9414 5.8896 -4.9361 38 1 -1.2316 5.0111 -6.3118 39 1 -4.1422 6.7382 -7.7641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310014346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:39 Heat of formation + Delta-G solvation = 14.856164 kcal Electronic energy + Delta-G solvation = -17683.734275 eV Core-core repulsion = 14945.001767 eV Total energy + Delta-G solvation = -2738.732508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76979 -36.98188 -35.41728 -32.67083 -31.94305 -30.48596 -28.10510 -26.33524 -24.59882 -23.28071 -22.85285 -21.48156 -21.17770 -18.46101 -18.00639 -16.47565 -15.73266 -15.06242 -14.84944 -14.72778 -14.34686 -14.20409 -13.96097 -13.65711 -13.31815 -12.97751 -12.57886 -12.33264 -12.06843 -11.93901 -11.83340 -11.51861 -11.29145 -11.11328 -10.99407 -10.86733 -10.72004 -10.71645 -10.67781 -10.03569 -9.42957 -9.26170 -9.07332 -8.58315 -8.51085 -7.41902 -6.07294 -4.09544 0.89738 1.48774 1.92675 3.03624 3.30024 3.36137 3.41139 4.12029 4.40557 4.57412 4.73515 4.81277 5.06479 5.14326 5.16687 5.24739 5.28808 5.36889 5.43300 5.46377 5.57184 5.58877 5.65603 5.73614 5.90504 5.94410 6.04634 6.05300 6.13123 6.15052 6.19587 6.43809 7.13041 7.32301 7.71702 7.91315 8.05118 8.27074 8.50055 8.98993 9.55558 11.03806 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003469 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.166154 B = 8069.858075 C = 8490.834820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.006 4.006 4 C -0.111 4.111 5 C -0.152 4.152 6 C 0.046 3.954 7 N -0.467 5.467 8 C 0.041 3.959 9 C -0.193 4.193 10 C 0.131 3.869 11 N -0.683 5.683 12 C 0.194 3.806 13 C -0.515 4.515 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 S 0.099 5.901 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.175 0.825 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.330 0.670 37 H -0.012 1.012 38 H 0.031 0.969 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 -8.554 16.771 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.028 4.028 4 C -0.150 4.150 5 C -0.210 4.210 6 C -0.233 4.233 7 N -0.180 5.180 8 C -0.110 4.110 9 C -0.314 4.314 10 C 0.000 4.000 11 N -0.314 5.314 12 C 0.067 3.933 13 C -0.554 4.554 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.728 3.272 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 S 0.354 5.646 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.192 0.808 34 H 0.050 0.950 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.006 0.994 38 H 0.049 0.951 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.091 -8.617 16.784 22.964 hybrid contribution -1.047 0.387 -0.763 1.352 sum 12.044 -8.230 16.021 21.667 Atomic orbital electron populations 1.21810 0.95613 1.01706 1.02106 1.21591 0.96128 0.94487 1.02849 1.19943 0.96604 0.96054 0.90229 1.21509 0.93402 1.01880 0.98212 1.21831 1.01194 1.01261 0.96691 1.26823 1.00841 0.98121 0.97466 1.66155 1.23721 1.30329 0.97838 1.21653 0.98263 0.92098 0.98959 1.26099 1.05837 1.04010 0.95469 1.20311 0.93177 0.91703 0.94856 1.60777 1.01657 1.49980 1.18943 1.19602 0.93980 0.88885 0.90788 1.21152 0.99777 1.07194 1.27252 0.91915 1.24987 0.98684 0.94887 0.95970 1.69962 1.37407 1.14512 1.31821 0.86462 0.83797 0.79292 0.77668 1.20680 1.21176 1.19715 1.83959 1.48653 1.27875 1.04066 0.92755 0.92614 0.92564 0.90805 0.91081 0.89673 0.90793 0.91949 0.92667 0.92320 0.92566 0.80813 0.94951 0.89434 0.85362 0.99399 0.95114 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.61 37.15 0.36 -1.19 16 2 C -0.11 -1.05 5.26 -26.74 -0.14 -1.19 16 3 C -0.01 -0.06 2.29 -91.77 -0.21 -0.27 16 4 C -0.11 -0.98 5.37 -26.73 -0.14 -1.13 16 5 C -0.15 -1.02 9.53 37.16 0.35 -0.67 16 6 C 0.05 0.59 5.00 -13.46 -0.07 0.52 16 7 N -0.47 -6.90 10.51 -11.86 -0.12 -7.03 16 8 C 0.04 0.63 11.25 -19.18 -0.22 0.41 16 9 C -0.19 -3.05 6.11 -35.92 -0.22 -3.27 16 10 C 0.13 2.34 6.22 -4.97 -0.03 2.31 16 11 N -0.68 -14.72 6.48 -116.33 -0.75 -15.47 16 12 C 0.19 5.05 5.44 -4.97 -0.03 5.02 16 13 C -0.52 -14.62 9.32 -34.44 -0.32 -14.94 16 14 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 17 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 S 0.10 1.34 23.17 -107.50 -2.49 -1.15 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.69 7.60 -51.93 -0.39 0.29 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 26 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 27 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 6.79 -51.93 -0.35 0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.17 2.51 8.06 -52.49 -0.42 2.09 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.33 6.95 8.71 -39.29 -0.34 6.61 16 37 H -0.01 -0.32 8.14 -51.93 -0.42 -0.75 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -30.08 336.61 -9.81 -39.89 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.47 Total: 0.88 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.76 Total: -12.88 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.14 Total: -48.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.49 Total: -1.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.08 -9.81 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310014346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.747 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds