Wall clock time and date at job start Mon Mar 30 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47263 * 2 1 4 4 C 1.53000 * 109.47575 * 175.27113 * 3 2 1 5 5 C 1.52999 * 109.47222 * 294.45632 * 4 3 2 6 6 C 1.50705 * 109.46941 * 295.27262 * 3 2 1 7 7 N 1.29019 * 124.91544 * 299.97280 * 6 3 2 8 8 C 1.31785 * 117.12754 * 180.02562 * 7 6 3 9 9 C 1.33643 * 114.49301 * 359.97438 * 8 7 6 10 10 C 1.50699 * 126.03211 * 179.74126 * 9 8 7 11 11 N 1.46905 * 109.47060 * 90.02602 * 10 9 8 12 12 C 1.46904 * 110.99777 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47096 * 180.02562 * 12 11 10 14 14 H 1.08008 * 120.00052 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00478 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99463 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00412 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47243 * 90.00078 * 17 15 13 19 19 H 1.48500 * 109.47134 * 210.00165 * 17 15 13 20 20 H 1.48506 * 109.47012 * 330.00182 * 17 15 13 21 21 S 1.70979 * 124.91616 * 119.97579 * 6 3 2 22 22 H 1.08998 * 109.47339 * 306.73961 * 1 2 3 23 23 H 1.09004 * 109.46850 * 66.74701 * 1 2 3 24 24 H 1.09005 * 109.47407 * 186.74094 * 1 2 3 25 25 H 1.09006 * 109.47298 * 239.99707 * 2 1 3 26 26 H 1.09001 * 109.47154 * 120.00087 * 2 1 3 27 27 H 1.08999 * 109.47100 * 55.27340 * 3 2 1 28 28 H 1.08999 * 109.47018 * 54.44955 * 4 3 2 29 29 H 1.08997 * 109.47694 * 174.45421 * 4 3 2 30 30 H 1.08999 * 109.46856 * 306.20692 * 5 4 3 31 31 H 1.08999 * 109.47117 * 66.19854 * 5 4 3 32 32 H 1.08999 * 109.47758 * 186.20495 * 5 4 3 33 33 H 1.07995 * 122.75545 * 180.02562 * 8 7 6 34 34 H 1.09006 * 109.47097 * 210.02353 * 10 9 8 35 35 H 1.08999 * 109.47510 * 330.02887 * 10 9 8 36 36 H 1.00894 * 111.00002 * 56.04704 * 11 10 9 37 37 H 1.09004 * 109.46650 * 299.99856 * 12 11 10 38 38 H 1.08994 * 109.47545 * 60.00063 * 12 11 10 39 39 H 0.97004 * 119.99541 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4442 0.1189 5 6 3.9712 0.8839 1.4836 6 6 1.6355 2.1182 -1.2849 7 7 1.9816 1.7284 -2.4650 8 6 1.5398 2.4359 -3.4853 9 6 0.7780 3.4805 -3.1467 10 6 0.1447 4.4615 -4.0993 11 7 -1.1901 3.9812 -4.4812 12 6 -1.8389 4.9143 -5.4119 13 6 -3.2029 4.3897 -5.7799 14 1 -3.5527 3.4562 -5.3642 15 6 -4.0045 5.1013 -6.6471 16 7 -3.5784 6.2378 -7.1537 17 14 -5.6949 4.4506 -7.1037 18 1 -6.7010 4.9687 -6.1422 19 1 -6.0441 4.8994 -8.4755 20 1 -5.6833 2.9664 -7.0563 21 16 0.6516 3.5126 -1.3896 22 1 -0.3634 0.6147 0.8235 23 1 -0.3633 0.4057 -0.9442 24 1 -0.3634 -1.0206 0.1206 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6092 1.9802 0.8446 28 1 3.9919 0.8243 -0.6697 29 1 3.9364 2.4643 0.0201 30 1 3.4566 1.4355 2.2704 31 1 3.6972 -0.1696 1.5398 32 1 5.0486 0.9866 1.6128 33 1 1.7733 2.1912 -4.5109 34 1 0.0559 5.4336 -3.6139 35 1 0.7656 4.5556 -4.9902 36 1 -1.7646 3.8243 -3.6668 37 1 -1.9414 5.8896 -4.9361 38 1 -1.2316 5.0111 -6.3118 39 1 -4.1422 6.7382 -7.7641 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310014346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:38 Heat of formation + Delta-G solvation = -3.667760 kcal Electronic energy + Delta-G solvation = -17684.537533 eV Core-core repulsion = 14945.001767 eV Total energy + Delta-G solvation = -2739.535766 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88262 -37.96679 -37.02942 -34.70707 -32.64507 -31.93031 -29.37853 -27.90556 -25.82200 -24.65201 -23.59449 -23.40472 -22.14795 -19.58361 -19.14383 -18.48999 -17.01950 -16.60423 -16.23843 -15.66871 -15.56443 -15.45132 -15.16506 -14.80184 -14.74191 -14.20062 -13.99573 -13.50821 -13.28903 -13.17104 -12.85594 -12.72741 -12.63772 -12.60755 -12.27162 -12.21363 -12.04806 -11.79958 -11.65362 -11.41465 -11.38193 -10.69905 -10.50805 -10.24275 -9.73841 -9.22906 -8.25406 -6.36689 -0.25300 0.36195 0.78121 1.40188 1.41793 1.53690 1.86248 2.38560 3.08196 3.14195 3.59986 3.81040 3.88443 3.96799 4.00947 4.17705 4.37516 4.41099 4.57069 4.57987 4.62689 4.71558 4.82786 4.85538 5.01212 5.02823 5.09613 5.17141 5.20162 5.25082 5.28015 5.31490 5.48440 5.51256 5.56593 5.95901 6.33030 6.58388 6.77736 6.81816 7.34093 8.86114 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035653 B = 0.003469 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.166154 B = 8069.858075 C = 8490.834820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.010 4.010 4 C -0.107 4.107 5 C -0.148 4.148 6 C 0.060 3.940 7 N -0.487 5.487 8 C 0.042 3.958 9 C -0.222 4.222 10 C 0.138 3.862 11 N -0.682 5.682 12 C 0.209 3.791 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.973 3.027 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.266 1.266 21 S 0.123 5.877 22 H 0.066 0.934 23 H 0.026 0.974 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.177 0.823 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.333 0.667 37 H -0.034 1.034 38 H 0.007 0.993 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -9.798 18.655 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.032 4.032 4 C -0.146 4.146 5 C -0.205 4.205 6 C -0.218 4.218 7 N -0.201 5.201 8 C -0.109 4.109 9 C -0.343 4.343 10 C 0.007 3.993 11 N -0.313 5.313 12 C 0.081 3.919 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.572 5.572 17 Si 0.797 3.203 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.190 1.190 21 S 0.380 5.620 22 H 0.085 0.915 23 H 0.045 0.955 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.194 0.806 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.150 0.850 37 H -0.016 1.016 38 H 0.025 0.975 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.954 -9.861 18.689 24.785 hybrid contribution -0.911 0.742 -1.263 1.725 sum 12.043 -9.120 17.426 23.062 Atomic orbital electron populations 1.21817 0.96063 1.02402 1.00945 1.21576 0.95616 0.93995 1.03371 1.20214 0.97572 0.96370 0.89022 1.21474 0.92287 1.01543 0.99328 1.21808 1.01756 1.01685 0.95298 1.27513 0.98947 0.97237 0.98138 1.66223 1.24820 1.30770 0.98284 1.21803 0.97694 0.91805 0.99558 1.25816 1.07328 1.04405 0.96748 1.20188 0.91157 0.92395 0.95588 1.60634 1.02966 1.48899 1.18827 1.19244 0.93380 0.88642 0.90620 1.21499 1.00951 1.07381 1.27743 0.91959 1.25930 1.02940 0.94993 0.95656 1.70081 1.39099 1.15721 1.32330 0.85331 0.78574 0.78817 0.77579 1.19564 1.20562 1.19044 1.83817 1.48421 1.27926 1.01877 0.91526 0.95511 0.91598 0.92458 0.88356 0.87792 0.92087 0.92449 0.91651 0.91548 0.91948 0.80571 0.94747 0.89532 0.85010 1.01628 0.97524 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.61 71.98 0.69 -2.12 16 2 C -0.11 -1.76 5.26 30.59 0.16 -1.60 16 3 C -0.01 -0.17 2.29 -11.54 -0.03 -0.20 16 4 C -0.11 -1.68 5.37 30.59 0.16 -1.51 16 5 C -0.15 -1.55 9.53 71.98 0.69 -0.86 16 6 C 0.06 1.48 5.00 88.52 0.44 1.92 16 7 N -0.49 -14.18 10.51 -191.44 -2.01 -16.19 16 8 C 0.04 1.32 11.25 83.66 0.94 2.26 16 9 C -0.22 -7.02 6.11 24.64 0.15 -6.87 16 10 C 0.14 5.02 6.22 85.56 0.53 5.55 16 11 N -0.68 -30.07 6.48 -521.96 -3.38 -33.45 16 12 C 0.21 11.22 5.44 85.56 0.47 11.69 16 13 C -0.54 -30.93 9.32 25.60 0.24 -30.69 16 14 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 15 C 0.00 0.19 5.46 84.65 0.46 0.65 16 16 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 17 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 S 0.12 3.21 23.17 -56.49 -1.31 1.90 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.03 0.63 7.60 -2.38 -0.02 0.61 16 24 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 25 H 0.06 1.16 8.13 -2.38 -0.02 1.14 16 26 H 0.10 1.12 6.51 -2.39 -0.02 1.11 16 27 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.60 6.79 -2.39 -0.02 0.59 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.18 5.18 8.06 -2.91 -0.02 5.15 16 34 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.33 14.23 8.71 -89.70 -0.78 13.44 16 37 H -0.03 -1.94 8.14 -2.38 -0.02 -1.96 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -64.59 336.61 0.76 -63.83 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.24 Total: 15.21 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.91 Total: -21.78 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.11 Total: -105.61 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.31 Total: 1.90 kcal Total: -64.59 0.76 -63.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310014346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.166 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds