Wall clock time and date at job start Mon Mar 30 2020 07:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 C 1.53000 * 109.49122 * 298.01612 * 3 2 1 5 5 C 1.53155 * 109.48866 * 177.97370 * 3 2 1 6 6 C 1.52925 * 109.14713 * 182.90675 * 5 3 2 7 7 C 1.54170 * 109.46855 * 296.13701 * 6 5 3 8 8 C 1.55350 * 102.17691 * 218.89598 * 7 6 5 9 9 C 1.54966 * 100.96444 * 33.96566 * 8 7 6 10 10 C 1.52998 * 110.39356 * 82.64967 * 9 8 7 11 11 C 1.50701 * 110.30440 * 204.77222 * 9 8 7 12 12 H 1.07998 * 120.00063 * 357.17175 * 11 9 8 13 13 C 1.37884 * 119.99519 * 177.17720 * 11 9 8 14 14 N 1.31510 * 120.00251 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99598 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47221 * 89.99742 * 15 13 11 17 17 H 1.48499 * 109.46878 * 209.99826 * 15 13 11 18 18 H 1.48502 * 109.47017 * 329.99785 * 15 13 11 19 19 O 1.42972 * 110.15465 * 177.71036 * 6 5 3 20 20 C 1.52930 * 109.75358 * 56.28851 * 6 5 3 21 21 C 1.53144 * 109.15021 * 303.70662 * 20 6 5 22 22 O 1.42905 * 109.37637 * 57.12962 * 21 20 6 23 23 H 1.09002 * 109.47226 * 66.35482 * 1 2 3 24 24 H 1.08999 * 109.46996 * 306.35293 * 1 2 3 25 25 H 1.09001 * 109.47051 * 186.35377 * 1 2 3 26 26 H 1.08997 * 109.47679 * 120.00168 * 2 1 3 27 27 H 1.09008 * 109.47178 * 240.00677 * 2 1 3 28 28 H 1.08999 * 109.46915 * 41.99197 * 4 3 2 29 29 H 1.08996 * 109.47443 * 161.99776 * 4 3 2 30 30 H 1.09004 * 109.46754 * 281.99578 * 4 3 2 31 31 H 1.08998 * 109.52421 * 302.80888 * 5 3 2 32 32 H 1.09001 * 109.52332 * 63.00602 * 5 3 2 33 33 H 1.08997 * 110.86169 * 337.07120 * 7 6 5 34 34 H 1.09000 * 110.86081 * 100.72544 * 7 6 5 35 35 H 1.08998 * 111.12328 * 276.03428 * 8 7 6 36 36 H 1.08999 * 111.12066 * 151.88518 * 8 7 6 37 37 H 1.09006 * 109.47075 * 302.76974 * 10 9 8 38 38 H 1.08998 * 109.47010 * 62.77192 * 10 9 8 39 39 H 1.08999 * 109.47204 * 182.77722 * 10 9 8 40 40 H 0.97000 * 120.00010 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.52339 * 63.60795 * 20 6 5 42 42 H 1.08991 * 109.52527 * 183.73281 * 20 6 5 43 43 H 1.08992 * 109.48785 * 177.10547 * 21 20 6 44 44 H 1.09004 * 109.48526 * 297.14414 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5713 2.1496 -1.2733 5 6 3.5706 1.4433 0.0511 6 6 4.0693 2.8871 0.1240 7 6 3.6754 3.6326 -1.1667 8 6 4.9299 4.5087 -1.4350 9 6 6.0555 3.5781 -0.9171 10 6 6.4406 2.5585 -1.9908 11 6 7.2592 4.3891 -0.5114 12 1 7.2599 5.4603 -0.6488 13 6 8.3597 3.7633 0.0349 14 7 8.3587 2.4589 0.2025 15 14 9.8521 4.7684 0.5371 16 1 9.7056 5.1997 1.9504 17 1 11.0766 3.9402 0.3966 18 1 9.9602 5.9643 -0.3367 19 8 5.4952 2.9112 0.2261 20 6 3.4433 3.5899 1.3294 21 6 1.9179 3.5015 1.2261 22 8 1.5270 2.1295 1.1434 23 1 -0.3634 0.4122 -0.9414 24 1 -0.3633 0.6092 0.8277 25 1 -0.3633 -1.0214 0.1137 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 0.5349 1.8809 -1.4777 29 1 1.6472 3.2286 -1.1387 30 1 2.1981 1.8430 -2.1108 31 1 3.9060 0.8971 0.9326 32 1 3.9653 0.9664 -0.8462 33 1 3.5094 2.9315 -1.9846 34 1 2.7954 4.2545 -1.0026 35 1 4.8916 5.4353 -0.8623 36 1 5.0468 4.7117 -2.4995 37 1 5.5591 1.9874 -2.2823 38 1 6.8396 3.0801 -2.8607 39 1 7.1972 1.8815 -1.5943 40 1 9.1331 2.0187 0.5865 41 1 3.7751 3.1041 2.2470 42 1 3.7487 4.6361 1.3401 43 1 1.4668 3.9557 2.1082 44 1 1.5827 4.0298 0.3334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310419422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:38 Heat of formation + Delta-G solvation = -88.215727 kcal Electronic energy + Delta-G solvation = -23043.837161 eV Core-core repulsion = 19961.422593 eV Total energy + Delta-G solvation = -3082.414568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57360 -37.75687 -34.30373 -33.42458 -31.76427 -31.09615 -29.87355 -27.98649 -27.63786 -25.38189 -24.17653 -23.22297 -22.27434 -19.96040 -19.25349 -18.35814 -16.67124 -15.99510 -15.91856 -14.99034 -14.64056 -14.29676 -14.10244 -13.84608 -13.65967 -13.46459 -12.81733 -12.45871 -12.30041 -12.23690 -11.85643 -11.82916 -11.51859 -11.34015 -11.10573 -10.96907 -10.87509 -10.73962 -10.65511 -10.55439 -10.42835 -10.28772 -10.07820 -9.97398 -9.50939 -9.34446 -9.19263 -8.84636 -8.47717 -7.88662 -5.95250 -4.10600 3.31206 3.38041 3.40168 4.00312 4.42979 4.72146 4.95066 5.03238 5.22198 5.32465 5.36163 5.39366 5.44381 5.47127 5.60057 5.65095 5.70434 5.78148 5.87901 5.93134 5.98580 6.04398 6.10185 6.16509 6.24483 6.32242 6.36793 6.38417 6.50159 6.56013 6.60888 6.63232 6.75730 6.85309 6.90346 6.99152 7.13453 7.34900 7.57056 7.79047 8.11243 8.37787 8.68109 9.08735 9.59964 11.07728 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.005701 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.886165 B = 4910.102505 C = 4963.598917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.120 3.880 4 C -0.197 4.197 5 C -0.140 4.140 6 C 0.107 3.893 7 C -0.156 4.156 8 C -0.146 4.146 9 C 0.233 3.767 10 C -0.145 4.145 11 C -0.525 4.525 12 H 0.060 0.940 13 C 0.081 3.919 14 N -0.859 5.859 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.337 6.337 20 C -0.153 4.153 21 C 0.060 3.940 22 O -0.375 6.375 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.010 0.990 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.259 0.741 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.480 -1.590 -1.917 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.081 3.919 4 C -0.254 4.254 5 C -0.178 4.178 6 C 0.066 3.934 7 C -0.193 4.193 8 C -0.183 4.183 9 C 0.196 3.804 10 C -0.202 4.202 11 C -0.563 4.563 12 H 0.079 0.921 13 C -0.125 4.125 14 N -0.496 5.496 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 O -0.256 6.256 20 C -0.191 4.191 21 C -0.016 4.016 22 O -0.294 6.294 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.357 -1.935 -1.560 13.587 hybrid contribution 0.983 0.743 -0.021 1.233 sum -12.374 -1.191 -1.581 12.532 Atomic orbital electron populations 1.21752 0.95618 1.01089 1.02128 1.21497 0.96320 0.94220 1.02494 1.21439 0.92735 0.92175 0.85556 1.23102 1.01306 1.02854 0.98099 1.22491 0.93754 0.98480 1.03071 1.21505 0.86656 0.92386 0.92845 1.23713 0.98240 0.99031 0.98273 1.23366 0.95462 0.99165 1.00344 1.19871 0.89924 0.87422 0.83199 1.22089 0.99945 1.00332 0.97873 1.20998 0.98099 0.93312 1.43877 0.92143 1.25009 0.98139 0.94779 0.94526 1.69974 1.29442 1.08027 1.42120 0.86682 0.82419 0.80265 0.79102 1.20576 1.21179 1.19873 1.88836 1.12472 1.78971 1.45358 1.22392 0.94688 1.01871 1.00113 1.22663 0.94659 0.83226 1.01098 1.87865 1.73364 1.23118 1.45093 0.92864 0.91812 0.93269 0.91351 0.90918 0.92470 0.90226 0.91411 0.91126 0.91111 0.90833 0.91563 0.91984 0.92204 0.97067 0.94695 0.89539 0.93082 0.91021 0.90866 0.89417 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.41 37.15 0.35 -1.30 16 2 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 3 C 0.12 1.77 0.79 -90.54 -0.07 1.70 16 4 C -0.20 -2.59 7.10 37.16 0.26 -2.33 16 5 C -0.14 -2.51 4.16 -26.69 -0.11 -2.63 16 6 C 0.11 2.11 0.99 -90.08 -0.09 2.02 16 7 C -0.16 -2.74 3.52 -24.87 -0.09 -2.83 16 8 C -0.15 -3.00 6.02 -24.45 -0.15 -3.15 16 9 C 0.23 5.78 0.72 -90.73 -0.07 5.71 16 10 C -0.14 -3.49 8.64 37.16 0.32 -3.17 16 11 C -0.53 -14.46 8.28 -34.44 -0.29 -14.75 16 12 H 0.06 1.64 7.77 -52.49 -0.41 1.23 16 13 C 0.08 2.25 5.28 -17.82 -0.09 2.15 16 14 N -0.86 -24.77 11.07 55.43 0.61 -24.16 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 O -0.34 -8.55 9.59 -35.23 -0.34 -8.89 16 20 C -0.15 -2.73 5.27 -26.69 -0.14 -2.87 16 21 C 0.06 0.88 6.42 37.23 0.24 1.12 16 22 O -0.37 -5.84 9.37 -35.23 -0.33 -6.17 16 23 H 0.05 0.55 6.45 -51.93 -0.34 0.21 16 24 H 0.06 0.76 7.44 -51.93 -0.39 0.38 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 28 H 0.06 0.67 5.92 -51.93 -0.31 0.36 16 29 H 0.08 1.06 3.17 -51.93 -0.16 0.90 16 30 H 0.07 0.89 6.49 -51.93 -0.34 0.55 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 33 H 0.07 1.24 5.14 -51.93 -0.27 0.97 16 34 H 0.07 1.02 4.83 -51.93 -0.25 0.77 16 35 H 0.06 1.28 8.04 -51.93 -0.42 0.87 16 36 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 37 H 0.01 0.23 7.39 -51.93 -0.38 -0.16 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.33 6.21 -51.93 -0.32 2.01 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.70 4.91 -51.93 -0.26 0.44 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -29.47 315.84 -7.55 -37.02 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.18 Total: 3.06 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.83 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.61 Total: -24.16 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.67 Total: -15.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.47 -7.55 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.194 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds