Wall clock time and date at job start Mon Mar 30 2020 07:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 C 1.53000 * 109.49122 * 298.01612 * 3 2 1 5 5 C 1.53155 * 109.48866 * 177.97370 * 3 2 1 6 6 C 1.52925 * 109.14713 * 182.90675 * 5 3 2 7 7 C 1.54170 * 109.46855 * 296.13701 * 6 5 3 8 8 C 1.55350 * 102.17691 * 218.89598 * 7 6 5 9 9 C 1.54966 * 100.96444 * 33.96566 * 8 7 6 10 10 C 1.52998 * 110.39356 * 82.64967 * 9 8 7 11 11 C 1.50701 * 110.30440 * 204.77222 * 9 8 7 12 12 H 1.07998 * 120.00063 * 357.17175 * 11 9 8 13 13 C 1.37884 * 119.99519 * 177.17720 * 11 9 8 14 14 N 1.31510 * 120.00251 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99598 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47221 * 89.99742 * 15 13 11 17 17 H 1.48499 * 109.46878 * 209.99826 * 15 13 11 18 18 H 1.48502 * 109.47017 * 329.99785 * 15 13 11 19 19 O 1.42972 * 110.15465 * 177.71036 * 6 5 3 20 20 C 1.52930 * 109.75358 * 56.28851 * 6 5 3 21 21 C 1.53144 * 109.15021 * 303.70662 * 20 6 5 22 22 O 1.42905 * 109.37637 * 57.12962 * 21 20 6 23 23 H 1.09002 * 109.47226 * 66.35482 * 1 2 3 24 24 H 1.08999 * 109.46996 * 306.35293 * 1 2 3 25 25 H 1.09001 * 109.47051 * 186.35377 * 1 2 3 26 26 H 1.08997 * 109.47679 * 120.00168 * 2 1 3 27 27 H 1.09008 * 109.47178 * 240.00677 * 2 1 3 28 28 H 1.08999 * 109.46915 * 41.99197 * 4 3 2 29 29 H 1.08996 * 109.47443 * 161.99776 * 4 3 2 30 30 H 1.09004 * 109.46754 * 281.99578 * 4 3 2 31 31 H 1.08998 * 109.52421 * 302.80888 * 5 3 2 32 32 H 1.09001 * 109.52332 * 63.00602 * 5 3 2 33 33 H 1.08997 * 110.86169 * 337.07120 * 7 6 5 34 34 H 1.09000 * 110.86081 * 100.72544 * 7 6 5 35 35 H 1.08998 * 111.12328 * 276.03428 * 8 7 6 36 36 H 1.08999 * 111.12066 * 151.88518 * 8 7 6 37 37 H 1.09006 * 109.47075 * 302.76974 * 10 9 8 38 38 H 1.08998 * 109.47010 * 62.77192 * 10 9 8 39 39 H 1.08999 * 109.47204 * 182.77722 * 10 9 8 40 40 H 0.97000 * 120.00010 * 179.97438 * 14 13 11 41 41 H 1.09003 * 109.52339 * 63.60795 * 20 6 5 42 42 H 1.08991 * 109.52527 * 183.73281 * 20 6 5 43 43 H 1.08992 * 109.48785 * 177.10547 * 21 20 6 44 44 H 1.09004 * 109.48526 * 297.14414 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5713 2.1496 -1.2733 5 6 3.5706 1.4433 0.0511 6 6 4.0693 2.8871 0.1240 7 6 3.6754 3.6326 -1.1667 8 6 4.9299 4.5087 -1.4350 9 6 6.0555 3.5781 -0.9171 10 6 6.4406 2.5585 -1.9908 11 6 7.2592 4.3891 -0.5114 12 1 7.2599 5.4603 -0.6488 13 6 8.3597 3.7633 0.0349 14 7 8.3587 2.4589 0.2025 15 14 9.8521 4.7684 0.5371 16 1 9.7056 5.1997 1.9504 17 1 11.0766 3.9402 0.3966 18 1 9.9602 5.9643 -0.3367 19 8 5.4952 2.9112 0.2261 20 6 3.4433 3.5899 1.3294 21 6 1.9179 3.5015 1.2261 22 8 1.5270 2.1295 1.1434 23 1 -0.3634 0.4122 -0.9414 24 1 -0.3633 0.6092 0.8277 25 1 -0.3633 -1.0214 0.1137 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 0.5349 1.8809 -1.4777 29 1 1.6472 3.2286 -1.1387 30 1 2.1981 1.8430 -2.1108 31 1 3.9060 0.8971 0.9326 32 1 3.9653 0.9664 -0.8462 33 1 3.5094 2.9315 -1.9846 34 1 2.7954 4.2545 -1.0026 35 1 4.8916 5.4353 -0.8623 36 1 5.0468 4.7117 -2.4995 37 1 5.5591 1.9874 -2.2823 38 1 6.8396 3.0801 -2.8607 39 1 7.1972 1.8815 -1.5943 40 1 9.1331 2.0187 0.5865 41 1 3.7751 3.1041 2.2470 42 1 3.7487 4.6361 1.3401 43 1 1.4668 3.9557 2.1082 44 1 1.5827 4.0298 0.3334 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310419422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:37 Heat of formation + Delta-G solvation = -105.486421 kcal Electronic energy + Delta-G solvation = -23044.586075 eV Core-core repulsion = 19961.422593 eV Total energy + Delta-G solvation = -3083.163482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95660 -39.30197 -35.44139 -35.21093 -33.45683 -32.86743 -31.00709 -29.66938 -28.85705 -27.38143 -25.57904 -24.54213 -23.61924 -21.43194 -20.87207 -19.75012 -18.53063 -17.40386 -17.16253 -16.63660 -16.42369 -15.58133 -15.48022 -15.35636 -15.09116 -14.65103 -14.33681 -14.02617 -13.85953 -13.69690 -13.29440 -13.04799 -12.89935 -12.80460 -12.75569 -12.61787 -12.47363 -12.27133 -12.17824 -12.05745 -11.96123 -11.73013 -11.55481 -11.43197 -10.99824 -10.91175 -10.73695 -10.54336 -10.34808 -9.69211 -8.04268 -6.26466 1.39647 1.40911 1.50305 2.42376 2.84953 3.06591 3.47665 3.72186 3.87754 3.88895 4.04566 4.10366 4.17417 4.25202 4.39095 4.42637 4.49345 4.59704 4.67695 4.70349 4.70955 4.76496 4.83147 4.93356 4.94550 4.99087 5.04790 5.06922 5.11004 5.13720 5.20514 5.22989 5.31890 5.37459 5.46324 5.47350 5.52055 5.59069 5.68815 6.13461 6.35866 6.39036 6.68233 7.21934 7.49318 8.97389 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.005701 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.886165 B = 4910.102505 C = 4963.598917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C 0.123 3.877 4 C -0.194 4.194 5 C -0.135 4.135 6 C 0.092 3.908 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.218 3.782 10 C -0.135 4.135 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.031 3.969 14 N -0.890 5.890 15 Si 0.949 3.051 16 H -0.281 1.281 17 H -0.282 1.282 18 H -0.264 1.264 19 O -0.378 6.378 20 C -0.151 4.151 21 C 0.065 3.935 22 O -0.382 6.382 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.052 0.948 40 H 0.257 0.743 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.111 0.889 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.735 -0.830 -2.906 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.084 3.916 4 C -0.251 4.251 5 C -0.174 4.174 6 C 0.052 3.948 7 C -0.176 4.176 8 C -0.180 4.180 9 C 0.180 3.820 10 C -0.193 4.193 11 C -0.583 4.583 12 H 0.074 0.926 13 C -0.171 4.171 14 N -0.528 5.528 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.208 1.208 18 H -0.188 1.188 19 O -0.299 6.299 20 C -0.189 4.189 21 C -0.011 4.011 22 O -0.302 6.302 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.129 0.871 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.623 -1.166 -2.554 15.874 hybrid contribution 1.690 0.478 0.322 1.785 sum -13.934 -0.689 -2.232 14.128 Atomic orbital electron populations 1.21706 0.93809 1.02017 1.02417 1.21541 0.97844 0.92867 1.02498 1.21485 0.90053 0.93676 0.86405 1.23055 1.02656 1.02532 0.96813 1.22451 0.96637 0.96963 1.01310 1.21847 0.84231 0.93941 0.94804 1.23693 0.97876 0.98704 0.97288 1.23271 0.95349 0.98516 1.00848 1.19952 0.90645 0.88087 0.83286 1.21943 0.99696 0.99901 0.97778 1.21426 0.99713 0.93519 1.43652 0.92554 1.25753 1.00898 0.95695 0.94730 1.70128 1.30023 1.09455 1.43151 0.85724 0.79195 0.79105 0.78552 1.20693 1.20805 1.18837 1.88750 1.15955 1.79301 1.45846 1.22382 0.97385 1.00905 0.98253 1.22739 0.91856 0.83248 1.03251 1.87878 1.72970 1.23629 1.45701 0.91559 0.92701 0.91851 0.92561 0.89887 0.90261 0.90130 0.91170 0.93965 0.91880 0.89548 0.88541 0.92494 0.90788 0.95120 0.94249 0.92940 0.93402 0.93508 0.91359 0.87122 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.41 71.98 0.68 -2.04 16 2 C -0.11 -2.60 5.20 30.59 0.16 -2.45 16 3 C 0.12 3.38 0.79 -10.74 -0.01 3.37 16 4 C -0.19 -4.38 7.10 71.98 0.51 -3.86 16 5 C -0.14 -4.86 4.16 30.62 0.13 -4.73 16 6 C 0.09 3.60 0.99 -10.45 -0.01 3.59 16 7 C -0.14 -4.57 3.52 31.80 0.11 -4.46 16 8 C -0.14 -5.68 6.02 32.07 0.19 -5.48 16 9 C 0.22 10.89 0.72 -10.87 -0.01 10.89 16 10 C -0.14 -6.60 8.64 71.98 0.62 -5.98 16 11 C -0.55 -30.53 8.28 25.60 0.21 -30.32 16 12 H 0.06 3.09 7.77 -2.91 -0.02 3.07 16 13 C 0.03 1.78 5.28 84.66 0.45 2.23 16 14 N -0.89 -53.06 11.07 21.45 0.24 -52.82 16 15 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 O -0.38 -19.69 9.59 -148.98 -1.43 -21.12 16 20 C -0.15 -5.34 5.27 30.62 0.16 -5.18 16 21 C 0.07 1.74 6.42 72.03 0.46 2.20 16 22 O -0.38 -11.07 9.37 -148.98 -1.40 -12.47 16 23 H 0.07 1.09 6.45 -2.39 -0.02 1.08 16 24 H 0.05 1.15 7.44 -2.39 -0.02 1.14 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.08 1.47 5.92 -2.39 -0.01 1.46 16 29 H 0.08 1.79 3.17 -2.39 -0.01 1.78 16 30 H 0.07 1.57 6.49 -2.38 -0.02 1.56 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 2.30 7.94 -2.39 -0.02 2.29 16 33 H 0.09 2.63 5.14 -2.39 -0.01 2.62 16 34 H 0.10 2.60 4.83 -2.39 -0.01 2.59 16 35 H 0.06 2.30 8.04 -2.39 -0.02 2.28 16 36 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 37 H 0.03 1.31 7.39 -2.38 -0.02 1.29 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 2.91 6.21 -2.39 -0.01 2.89 16 40 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.07 1.66 4.91 -2.38 -0.01 1.65 16 Total: -1.00 -65.41 315.84 4.07 -61.33 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.98 Total: 20.89 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.66 Total: -42.23 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.24 Total: -52.82 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -2.82 Total: -33.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.41 4.07 -61.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.153 kcal (2) G-P(sol) polarization free energy of solvation -65.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds