Wall clock time and date at job start Mon Mar 30 2020 07:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 C 1.53004 * 109.51680 * 297.11772 * 3 2 1 5 5 C 1.53201 * 109.49346 * 177.04818 * 3 2 1 6 6 C 1.52592 * 109.20086 * 183.35282 * 5 3 2 7 7 C 1.53976 * 110.12083 * 293.79293 * 6 5 3 8 8 C 1.54615 * 104.04325 * 217.69540 * 7 6 5 9 9 C 1.54509 * 104.06043 * 359.55699 * 8 7 6 10 10 C 1.52998 * 110.35415 * 264.83861 * 9 8 7 11 11 C 1.50704 * 110.35513 * 142.65231 * 9 8 7 12 12 H 1.07994 * 120.00098 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99740 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00090 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99458 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47057 * 90.00478 * 15 13 11 17 17 H 1.48506 * 109.46656 * 210.00036 * 15 13 11 18 18 H 1.48493 * 109.47530 * 329.99853 * 15 13 11 19 19 O 1.44039 * 110.44697 * 177.81830 * 6 5 3 20 20 C 1.52582 * 110.38238 * 55.61059 * 6 5 3 21 21 C 1.53209 * 109.20529 * 304.40343 * 20 6 5 22 22 O 1.42901 * 109.34253 * 56.66361 * 21 20 6 23 23 H 1.08994 * 109.47159 * 177.77804 * 1 2 3 24 24 H 1.09007 * 109.47412 * 297.78169 * 1 2 3 25 25 H 1.09007 * 109.47267 * 57.78306 * 1 2 3 26 26 H 1.09004 * 109.47233 * 240.00169 * 2 1 3 27 27 H 1.09000 * 109.47311 * 119.99895 * 2 1 3 28 28 H 1.09008 * 109.46959 * 283.41775 * 4 3 2 29 29 H 1.09003 * 109.47326 * 43.41294 * 4 3 2 30 30 H 1.09002 * 109.47434 * 163.41673 * 4 3 2 31 31 H 1.08996 * 109.52035 * 63.43883 * 5 3 2 32 32 H 1.08995 * 109.56353 * 303.29297 * 5 3 2 33 33 H 1.08998 * 110.53645 * 99.01480 * 7 6 5 34 34 H 1.08997 * 110.53546 * 336.38031 * 7 6 5 35 35 H 1.09010 * 110.50976 * 118.19979 * 8 7 6 36 36 H 1.09000 * 110.51760 * 240.90917 * 8 7 6 37 37 H 1.08996 * 109.47466 * 25.59471 * 10 9 8 38 38 H 1.08998 * 109.47510 * 145.60084 * 10 9 8 39 39 H 1.09005 * 109.46729 * 265.59505 * 10 9 8 40 40 H 0.97002 * 119.99720 * 179.97438 * 14 13 11 41 41 H 1.08996 * 109.51848 * 64.31807 * 20 6 5 42 42 H 1.09005 * 109.51427 * 184.48950 * 20 6 5 43 43 H 1.08999 * 109.49049 * 296.70046 * 21 20 6 44 44 H 1.08998 * 109.49163 * 176.62797 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5906 2.1436 -1.2836 5 6 3.5701 1.4438 0.0744 6 6 4.0673 2.8840 0.1582 7 6 3.7533 3.6298 -1.1518 8 6 4.9877 4.5341 -1.3738 9 6 5.8966 4.2330 -0.1611 10 6 5.6619 5.2606 0.9479 11 6 7.3447 4.2346 -0.5782 12 1 7.6103 4.4304 -1.6065 13 6 8.3307 3.9872 0.3533 14 7 8.0073 3.7494 1.6057 15 14 10.1257 3.9900 -0.1636 16 1 10.6801 5.3601 -0.0201 17 1 10.8905 3.0537 0.6988 18 1 10.2336 3.5582 -1.5803 19 8 5.5022 2.9146 0.2806 20 6 3.4205 3.6016 1.3392 21 6 1.8965 3.5092 1.2118 22 8 1.5106 2.1356 1.1322 23 1 -0.3633 -1.0268 -0.0398 24 1 -0.3634 0.4790 0.9092 25 1 -0.3634 0.5479 -0.8695 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2136 1.8136 -2.1150 29 1 0.5494 1.8941 -1.4885 30 1 1.6886 3.2223 -1.1619 31 1 3.9785 0.9690 -0.8177 32 1 3.8930 0.8951 0.9591 33 1 2.8522 4.2330 -1.0418 34 1 3.6423 2.9251 -1.9758 35 1 5.4918 4.2707 -2.3037 36 1 4.6956 5.5842 -1.3808 37 1 4.6556 5.6693 0.8576 38 1 5.7726 4.7786 1.9192 39 1 6.3908 6.0661 0.8569 40 1 8.7010 3.5750 2.2609 41 1 3.7373 3.1303 2.2695 42 1 3.7231 4.6488 1.3390 43 1 1.5747 4.0303 0.3102 44 1 1.4302 3.9681 2.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310419424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:45 Heat of formation + Delta-G solvation = -81.895859 kcal Electronic energy + Delta-G solvation = -23074.995414 eV Core-core repulsion = 19992.854896 eV Total energy + Delta-G solvation = -3082.140518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60861 -37.85892 -34.27345 -33.30574 -31.69914 -30.97002 -30.01102 -28.34992 -27.69548 -25.43406 -24.14623 -23.13455 -22.15074 -19.87074 -19.37785 -18.31890 -16.64417 -16.14598 -15.87816 -14.77105 -14.71999 -14.32033 -14.10412 -13.80227 -13.59472 -13.51612 -13.02645 -12.67673 -12.39358 -12.25440 -11.80628 -11.77975 -11.68489 -11.31965 -11.05417 -10.97030 -10.79305 -10.72823 -10.58208 -10.51934 -10.41168 -10.29014 -9.93543 -9.88889 -9.45330 -9.27407 -9.17600 -8.76326 -8.50865 -8.08564 -5.98898 -4.11802 3.30008 3.37375 3.40471 4.01791 4.41959 4.68510 4.96253 5.10613 5.20748 5.32126 5.37494 5.38834 5.49201 5.53716 5.60915 5.67759 5.69248 5.76372 5.86790 5.92127 5.99790 6.03884 6.09276 6.17810 6.21536 6.32517 6.37516 6.43378 6.48930 6.52255 6.60079 6.67833 6.78960 6.85488 6.91510 7.00589 7.20759 7.24272 7.58736 7.79738 7.97299 8.35157 8.59308 8.99968 9.57934 11.06449 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.005686 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.233537 B = 4922.882585 C = 5036.415360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.122 3.878 4 C -0.197 4.197 5 C -0.126 4.126 6 C 0.100 3.900 7 C -0.150 4.150 8 C -0.144 4.144 9 C 0.227 3.773 10 C -0.134 4.134 11 C -0.523 4.523 12 H 0.061 0.939 13 C 0.079 3.921 14 N -0.860 5.860 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.336 6.336 20 C -0.184 4.184 21 C 0.059 3.941 22 O -0.376 6.376 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.259 0.741 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.239 -2.506 -2.990 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C 0.082 3.918 4 C -0.253 4.253 5 C -0.163 4.163 6 C 0.059 3.941 7 C -0.187 4.187 8 C -0.182 4.182 9 C 0.190 3.810 10 C -0.192 4.192 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.126 4.126 14 N -0.496 5.496 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.198 1.198 19 O -0.255 6.255 20 C -0.222 4.222 21 C -0.017 4.017 22 O -0.295 6.295 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.135 -2.814 -2.594 13.682 hybrid contribution 1.158 0.293 -0.423 1.267 sum -11.977 -2.521 -3.016 12.606 Atomic orbital electron populations 1.21752 0.95540 1.00849 1.02417 1.21492 0.96421 0.94127 1.02472 1.21409 0.92256 0.92202 0.85898 1.23047 1.01413 1.02927 0.97945 1.22057 0.94041 0.97157 1.03087 1.21553 0.86888 0.93154 0.92488 1.23389 0.98100 0.98891 0.98350 1.23138 0.95674 0.97917 1.01438 1.19868 0.93076 0.80538 0.87537 1.22379 0.95811 0.99322 1.01669 1.20943 0.89036 1.50775 0.95274 0.92040 1.25025 0.98889 0.93805 0.94911 1.70047 1.32731 1.45172 1.01638 0.86650 0.85117 0.77806 0.78712 1.20620 1.21148 1.19837 1.89493 1.13961 1.35374 1.86720 1.23089 0.94711 1.04068 1.00303 1.22692 0.95190 0.82947 1.00913 1.87863 1.72771 1.23012 1.45857 0.93291 0.91965 0.92673 0.90909 0.91326 0.91483 0.92349 0.90246 0.90995 0.91027 0.91889 0.91506 0.92041 0.92776 0.96463 0.91377 0.93548 0.93082 0.91001 0.88509 0.93190 0.89522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.51 37.15 0.35 -1.27 16 2 C -0.11 -1.34 5.19 -26.73 -0.14 -1.48 16 3 C 0.12 1.78 0.79 -90.51 -0.07 1.70 16 4 C -0.20 -2.56 7.11 37.16 0.26 -2.30 16 5 C -0.13 -2.22 4.18 -26.84 -0.11 -2.33 16 6 C 0.10 1.98 0.88 -90.53 -0.08 1.90 16 7 C -0.15 -2.68 4.09 -25.37 -0.10 -2.78 16 8 C -0.14 -2.99 6.02 -25.09 -0.15 -3.14 16 9 C 0.23 5.63 0.73 -90.98 -0.07 5.56 16 10 C -0.13 -3.18 6.43 37.16 0.24 -2.94 16 11 C -0.52 -14.44 8.10 -34.44 -0.28 -14.72 16 12 H 0.06 1.67 7.56 -52.49 -0.40 1.28 16 13 C 0.08 2.21 5.28 -17.82 -0.09 2.12 16 14 N -0.86 -24.77 11.66 55.43 0.65 -24.12 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 O -0.34 -8.59 10.25 -35.23 -0.36 -8.95 16 20 C -0.18 -3.38 4.43 -26.84 -0.12 -3.50 16 21 C 0.06 0.89 6.43 37.27 0.24 1.13 16 22 O -0.38 -5.92 9.48 -35.23 -0.33 -6.25 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 25 H 0.05 0.57 6.11 -51.93 -0.32 0.25 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.85 6.71 -51.92 -0.35 0.50 16 29 H 0.06 0.67 5.84 -51.93 -0.30 0.37 16 30 H 0.08 1.07 3.14 -51.93 -0.16 0.90 16 31 H 0.07 1.25 7.99 -51.93 -0.42 0.83 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.99 4.86 -51.93 -0.25 0.74 16 34 H 0.07 1.12 5.83 -51.93 -0.30 0.82 16 35 H 0.06 1.30 7.70 -51.92 -0.40 0.90 16 36 H 0.05 1.04 7.75 -51.93 -0.40 0.63 16 37 H 0.02 0.35 5.51 -51.93 -0.29 0.06 16 38 H 0.07 1.74 7.20 -51.93 -0.37 1.37 16 39 H 0.05 1.13 7.83 -51.93 -0.41 0.73 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.10 1.81 4.08 -51.93 -0.21 1.60 16 43 H 0.05 0.70 5.02 -51.93 -0.26 0.44 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -29.57 309.42 -7.44 -37.01 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.91 Total: 3.45 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -0.12 Total: -22.05 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.65 Total: -24.12 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.69 Total: -15.20 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.57 -7.44 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.889 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds