Wall clock time and date at job start Mon Mar 30 2020 07:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 C 1.53004 * 109.51680 * 297.11772 * 3 2 1 5 5 C 1.53201 * 109.49346 * 177.04818 * 3 2 1 6 6 C 1.52592 * 109.20086 * 183.35282 * 5 3 2 7 7 C 1.53976 * 110.12083 * 293.79293 * 6 5 3 8 8 C 1.54615 * 104.04325 * 217.69540 * 7 6 5 9 9 C 1.54509 * 104.06043 * 359.55699 * 8 7 6 10 10 C 1.52998 * 110.35415 * 264.83861 * 9 8 7 11 11 C 1.50704 * 110.35513 * 142.65231 * 9 8 7 12 12 H 1.07994 * 120.00098 * 0.02562 * 11 9 8 13 13 C 1.37880 * 119.99740 * 179.97438 * 11 9 8 14 14 N 1.31513 * 120.00090 * 0.02562 * 13 11 9 15 15 Si 1.86802 * 119.99458 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47057 * 90.00478 * 15 13 11 17 17 H 1.48506 * 109.46656 * 210.00036 * 15 13 11 18 18 H 1.48493 * 109.47530 * 329.99853 * 15 13 11 19 19 O 1.44039 * 110.44697 * 177.81830 * 6 5 3 20 20 C 1.52582 * 110.38238 * 55.61059 * 6 5 3 21 21 C 1.53209 * 109.20529 * 304.40343 * 20 6 5 22 22 O 1.42901 * 109.34253 * 56.66361 * 21 20 6 23 23 H 1.08994 * 109.47159 * 177.77804 * 1 2 3 24 24 H 1.09007 * 109.47412 * 297.78169 * 1 2 3 25 25 H 1.09007 * 109.47267 * 57.78306 * 1 2 3 26 26 H 1.09004 * 109.47233 * 240.00169 * 2 1 3 27 27 H 1.09000 * 109.47311 * 119.99895 * 2 1 3 28 28 H 1.09008 * 109.46959 * 283.41775 * 4 3 2 29 29 H 1.09003 * 109.47326 * 43.41294 * 4 3 2 30 30 H 1.09002 * 109.47434 * 163.41673 * 4 3 2 31 31 H 1.08996 * 109.52035 * 63.43883 * 5 3 2 32 32 H 1.08995 * 109.56353 * 303.29297 * 5 3 2 33 33 H 1.08998 * 110.53645 * 99.01480 * 7 6 5 34 34 H 1.08997 * 110.53546 * 336.38031 * 7 6 5 35 35 H 1.09010 * 110.50976 * 118.19979 * 8 7 6 36 36 H 1.09000 * 110.51760 * 240.90917 * 8 7 6 37 37 H 1.08996 * 109.47466 * 25.59471 * 10 9 8 38 38 H 1.08998 * 109.47510 * 145.60084 * 10 9 8 39 39 H 1.09005 * 109.46729 * 265.59505 * 10 9 8 40 40 H 0.97002 * 119.99720 * 179.97438 * 14 13 11 41 41 H 1.08996 * 109.51848 * 64.31807 * 20 6 5 42 42 H 1.09005 * 109.51427 * 184.48950 * 20 6 5 43 43 H 1.08999 * 109.49049 * 296.70046 * 21 20 6 44 44 H 1.08998 * 109.49163 * 176.62797 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5906 2.1436 -1.2836 5 6 3.5701 1.4438 0.0744 6 6 4.0673 2.8840 0.1582 7 6 3.7533 3.6298 -1.1518 8 6 4.9877 4.5341 -1.3738 9 6 5.8966 4.2330 -0.1611 10 6 5.6619 5.2606 0.9479 11 6 7.3447 4.2346 -0.5782 12 1 7.6103 4.4304 -1.6065 13 6 8.3307 3.9872 0.3533 14 7 8.0073 3.7494 1.6057 15 14 10.1257 3.9900 -0.1636 16 1 10.6801 5.3601 -0.0201 17 1 10.8905 3.0537 0.6988 18 1 10.2336 3.5582 -1.5803 19 8 5.5022 2.9146 0.2806 20 6 3.4205 3.6016 1.3392 21 6 1.8965 3.5092 1.2118 22 8 1.5106 2.1356 1.1322 23 1 -0.3633 -1.0268 -0.0398 24 1 -0.3634 0.4790 0.9092 25 1 -0.3634 0.5479 -0.8695 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.2136 1.8136 -2.1150 29 1 0.5494 1.8941 -1.4885 30 1 1.6886 3.2223 -1.1619 31 1 3.9785 0.9690 -0.8177 32 1 3.8930 0.8951 0.9591 33 1 2.8522 4.2330 -1.0418 34 1 3.6423 2.9251 -1.9758 35 1 5.4918 4.2707 -2.3037 36 1 4.6956 5.5842 -1.3808 37 1 4.6556 5.6693 0.8576 38 1 5.7726 4.7786 1.9192 39 1 6.3908 6.0661 0.8569 40 1 8.7010 3.5750 2.2609 41 1 3.7373 3.1303 2.2695 42 1 3.7231 4.6488 1.3390 43 1 1.5747 4.0303 0.3102 44 1 1.4302 3.9681 2.0836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310419424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:44 Heat of formation + Delta-G solvation = -99.697819 kcal Electronic energy + Delta-G solvation = -23075.767365 eV Core-core repulsion = 19992.854896 eV Total energy + Delta-G solvation = -3082.912469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01804 -39.37940 -35.37929 -35.16743 -33.36675 -32.74855 -31.25026 -29.95009 -28.87713 -27.41893 -25.51867 -24.47981 -23.52453 -21.35818 -20.97802 -19.72122 -18.56479 -17.48055 -17.13631 -16.66520 -16.19503 -15.73897 -15.50904 -15.21305 -15.06427 -14.90554 -14.30954 -14.27044 -13.87092 -13.72701 -13.40940 -13.08842 -12.90851 -12.82396 -12.71750 -12.48662 -12.39883 -12.27382 -12.10392 -12.04790 -11.88249 -11.55314 -11.50552 -11.36426 -11.06075 -10.87568 -10.69155 -10.54414 -10.29456 -9.90631 -8.08872 -6.28643 1.38772 1.40344 1.50003 2.41153 2.86384 3.06604 3.46067 3.79041 3.89018 3.94344 4.04420 4.12986 4.20481 4.25601 4.35166 4.44282 4.46067 4.57505 4.65668 4.68846 4.72299 4.77011 4.85942 4.89765 4.93352 5.01730 5.04737 5.06566 5.14984 5.16757 5.20585 5.25886 5.30790 5.39196 5.41691 5.49929 5.55443 5.60798 5.68746 6.01878 6.33839 6.40120 6.64178 7.06519 7.45216 8.95301 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.005686 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.233537 B = 4922.882585 C = 5036.415360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.124 3.876 4 C -0.194 4.194 5 C -0.124 4.124 6 C 0.088 3.912 7 C -0.136 4.136 8 C -0.142 4.142 9 C 0.212 3.788 10 C -0.118 4.118 11 C -0.545 4.545 12 H 0.057 0.943 13 C 0.030 3.970 14 N -0.892 5.892 15 Si 0.951 3.049 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.269 1.269 19 O -0.380 6.380 20 C -0.179 4.179 21 C 0.064 3.936 22 O -0.384 6.384 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.257 0.743 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -2.321 -4.599 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.085 3.915 4 C -0.250 4.250 5 C -0.162 4.162 6 C 0.048 3.952 7 C -0.173 4.173 8 C -0.180 4.180 9 C 0.175 3.825 10 C -0.176 4.176 11 C -0.582 4.582 12 H 0.075 0.925 13 C -0.172 4.172 14 N -0.529 5.529 15 Si 0.777 3.223 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.194 1.194 19 O -0.300 6.300 20 C -0.217 4.217 21 C -0.013 4.013 22 O -0.303 6.303 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.245 -2.623 -4.213 16.032 hybrid contribution 1.813 0.195 0.100 1.827 sum -13.431 -2.429 -4.113 14.255 Atomic orbital electron populations 1.21711 0.93898 1.02022 1.02345 1.21539 0.97795 0.92674 1.02662 1.21497 0.89673 0.93741 0.86636 1.23003 1.02835 1.02444 0.96737 1.22092 0.96823 0.95535 1.01758 1.21886 0.84302 0.94941 0.94113 1.23367 0.97818 0.98664 0.97443 1.23066 0.96128 0.99637 0.99160 1.19967 0.92698 0.80622 0.89248 1.22190 0.97115 0.98315 0.99942 1.21387 0.91300 1.50444 0.95106 0.92505 1.25780 1.02934 0.93614 0.94920 1.70192 1.33685 1.46432 1.02546 0.85682 0.80299 0.78074 0.78288 1.19588 1.21226 1.19372 1.89402 1.17762 1.35600 1.87229 1.22989 0.97431 1.02910 0.98338 1.22750 0.92380 0.83154 1.02970 1.87876 1.72419 1.23380 1.46655 0.91699 0.93029 0.91543 0.89530 0.92494 0.90963 0.90189 0.90378 0.91094 0.93680 0.88875 0.90080 0.92822 0.91017 0.93155 0.94326 0.95426 0.93375 0.94042 0.89123 0.90976 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.51 71.98 0.68 -1.99 16 2 C -0.11 -2.50 5.19 30.59 0.16 -2.34 16 3 C 0.12 3.35 0.79 -10.72 -0.01 3.34 16 4 C -0.19 -4.29 7.11 71.98 0.51 -3.77 16 5 C -0.12 -4.35 4.18 30.53 0.13 -4.23 16 6 C 0.09 3.44 0.88 -10.74 -0.01 3.43 16 7 C -0.14 -4.52 4.09 31.47 0.13 -4.40 16 8 C -0.14 -5.72 6.02 31.66 0.19 -5.53 16 9 C 0.21 10.63 0.73 -11.03 -0.01 10.62 16 10 C -0.12 -5.69 6.43 71.98 0.46 -5.23 16 11 C -0.54 -30.68 8.10 25.60 0.21 -30.48 16 12 H 0.06 3.14 7.56 -2.91 -0.02 3.12 16 13 C 0.03 1.70 5.28 84.66 0.45 2.15 16 14 N -0.89 -53.20 11.66 21.45 0.25 -52.95 16 15 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 O -0.38 -19.91 10.25 -148.98 -1.53 -21.44 16 20 C -0.18 -6.49 4.43 30.53 0.14 -6.35 16 21 C 0.06 1.76 6.43 72.05 0.46 2.22 16 22 O -0.38 -11.27 9.48 -148.98 -1.41 -12.68 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 1.08 7.68 -2.38 -0.02 1.06 16 25 H 0.07 1.10 6.11 -2.38 -0.01 1.08 16 26 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.55 6.71 -2.38 -0.02 1.53 16 29 H 0.08 1.46 5.84 -2.39 -0.01 1.45 16 30 H 0.08 1.74 3.14 -2.39 -0.01 1.73 16 31 H 0.07 2.44 7.99 -2.39 -0.02 2.42 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 2.54 4.86 -2.39 -0.01 2.53 16 34 H 0.08 2.48 5.83 -2.39 -0.01 2.46 16 35 H 0.05 2.21 7.70 -2.38 -0.02 2.19 16 36 H 0.07 2.59 7.75 -2.39 -0.02 2.57 16 37 H 0.05 2.02 5.51 -2.39 -0.01 2.01 16 38 H 0.04 2.04 7.20 -2.39 -0.02 2.03 16 39 H 0.03 1.37 7.83 -2.38 -0.02 1.35 16 40 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.09 3.33 4.08 -2.38 -0.01 3.32 16 43 H 0.07 1.70 5.02 -2.39 -0.01 1.69 16 44 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.99 309.42 3.82 -62.17 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.99 Total: 20.92 kcal Atomic # 6 Polarization: -46.05 SS G_CDS: 3.49 Total: -42.56 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.25 Total: -52.95 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.94 Total: -34.12 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.99 3.82 -62.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.528 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds