Wall clock time and date at job start Mon Mar 30 2020 07:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46780 * 2 1 4 4 C 1.52997 * 109.48911 * 304.99958 * 3 2 1 5 5 C 1.53145 * 109.48470 * 184.95829 * 3 2 1 6 6 C 1.52928 * 109.15614 * 182.89061 * 5 3 2 7 7 C 1.54153 * 109.51307 * 176.51527 * 6 5 3 8 8 C 1.55350 * 102.19231 * 98.61954 * 7 6 5 9 9 C 1.54969 * 100.96815 * 33.93408 * 8 7 6 10 10 C 1.53005 * 110.39436 * 82.63369 * 9 8 7 11 11 C 1.50702 * 110.31309 * 204.76258 * 9 8 7 12 12 H 1.08001 * 119.99856 * 357.16845 * 11 9 8 13 13 C 1.37876 * 120.00066 * 177.17124 * 11 9 8 14 14 N 1.31518 * 119.99648 * 179.97438 * 13 11 9 15 15 Si 1.86795 * 120.00211 * 359.97438 * 13 11 9 16 16 H 1.48505 * 109.46872 * 90.00289 * 15 13 11 17 17 H 1.48493 * 109.47353 * 210.00124 * 15 13 11 18 18 H 1.48505 * 109.47343 * 330.00307 * 15 13 11 19 19 O 1.42997 * 110.09828 * 294.93449 * 6 5 3 20 20 C 1.52925 * 109.75599 * 56.26905 * 6 5 3 21 21 C 1.53145 * 109.15296 * 303.72652 * 20 6 5 22 22 O 1.42910 * 109.48544 * 65.03961 * 3 2 1 23 23 H 1.09005 * 109.47216 * 60.00235 * 1 2 3 24 24 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47469 * 299.99728 * 1 2 3 26 26 H 1.09000 * 109.47469 * 240.00272 * 2 1 3 27 27 H 1.09005 * 109.47216 * 119.99765 * 2 1 3 28 28 H 1.08998 * 109.46997 * 52.57897 * 4 3 2 29 29 H 1.09001 * 109.46907 * 292.57543 * 4 3 2 30 30 H 1.09004 * 109.46976 * 172.57854 * 4 3 2 31 31 H 1.09000 * 109.53193 * 302.79565 * 5 3 2 32 32 H 1.09006 * 109.52331 * 62.98913 * 5 3 2 33 33 H 1.09000 * 110.85506 * 216.79653 * 7 6 5 34 34 H 1.08999 * 110.85677 * 340.44512 * 7 6 5 35 35 H 1.08994 * 111.12209 * 276.01230 * 8 7 6 36 36 H 1.08997 * 111.15755 * 151.87484 * 8 7 6 37 37 H 1.08997 * 109.46978 * 302.78786 * 10 9 8 38 38 H 1.09005 * 109.46537 * 62.78321 * 10 9 8 39 39 H 1.08996 * 109.47192 * 182.78018 * 10 9 8 40 40 H 0.97006 * 119.99595 * 179.97438 * 14 13 11 41 41 H 1.08997 * 109.52085 * 63.63148 * 20 6 5 42 42 H 1.09003 * 109.52384 * 183.82968 * 20 6 5 43 43 H 1.09005 * 109.48682 * 177.09867 * 21 20 6 44 44 H 1.08999 * 109.49327 * 297.14237 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4300 2.1995 -1.1815 5 6 3.5662 1.4448 -0.1248 6 6 4.0736 2.8856 -0.0515 7 6 5.6147 2.8913 -0.0883 8 6 5.9060 3.2086 -1.5809 9 6 4.7226 4.1505 -1.9185 10 6 5.0346 5.5801 -1.4714 11 6 4.4329 4.1172 -3.3971 12 1 5.0530 3.5271 -4.0557 13 6 3.3764 4.8401 -3.9090 14 7 3.1240 4.8115 -5.1994 15 14 2.3035 5.8603 -2.7699 16 1 2.8640 7.2309 -2.6578 17 1 0.9261 5.9323 -3.3199 18 1 2.2677 5.2287 -1.4263 19 8 3.6055 3.6294 -1.1795 20 6 3.5913 3.5381 1.2447 21 6 2.0639 3.4504 1.3134 22 8 1.6627 2.0815 1.2214 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.3460 2.0869 -1.1646 29 1 1.8230 1.7947 -2.1141 30 1 1.6867 3.2563 -1.1074 31 1 3.9993 0.8643 0.6898 32 1 3.8543 1.0053 -1.0798 33 1 6.0154 3.6708 0.5596 34 1 6.0130 1.9144 0.1857 35 1 5.8737 2.3042 -2.1883 36 1 6.8610 3.7215 -1.6949 37 1 5.2529 5.5873 -0.4036 38 1 5.8989 5.9523 -2.0215 39 1 4.1743 6.2190 -1.6708 40 1 2.3804 5.3198 -5.5595 41 1 4.0250 3.0169 2.0981 42 1 3.8972 4.5842 1.2617 43 1 1.7179 3.8678 2.2590 44 1 1.6298 4.0131 0.4870 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310419426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:48 Heat of formation + Delta-G solvation = -93.235683 kcal Electronic energy + Delta-G solvation = -23588.156896 eV Core-core repulsion = 20505.524646 eV Total energy + Delta-G solvation = -3082.632250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34839 -37.95917 -34.19328 -33.42827 -31.80814 -31.43791 -29.75315 -28.94376 -27.08020 -25.41556 -24.15022 -23.53548 -22.04609 -19.87793 -19.56482 -18.47712 -16.66888 -16.13282 -15.84804 -15.11541 -14.70949 -14.42345 -14.20290 -13.71932 -13.68457 -13.07666 -12.98705 -12.58221 -12.47991 -12.35292 -11.94553 -11.84729 -11.60869 -11.54693 -11.24439 -11.14751 -11.09172 -10.85432 -10.73331 -10.49826 -10.36510 -10.22890 -10.02590 -9.86419 -9.66512 -9.31429 -8.99195 -8.86569 -8.55487 -8.18781 -6.11092 -4.18045 3.34116 3.44299 3.61460 4.14166 4.49141 4.63501 4.96865 5.15956 5.19207 5.25636 5.35753 5.44163 5.52049 5.57687 5.61357 5.68817 5.78880 5.88733 5.95658 5.98993 6.05374 6.10488 6.14699 6.19950 6.22803 6.27900 6.31876 6.35654 6.39722 6.43828 6.48489 6.56565 6.65833 6.67554 6.71935 6.81742 6.83208 7.19899 7.31468 7.69909 7.71688 8.35914 8.46282 8.90607 9.53987 10.99776 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.009348 C = 0.008062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.007079 B = 2994.605295 C = 3472.282142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C 0.122 3.878 4 C -0.182 4.182 5 C -0.136 4.136 6 C 0.102 3.898 7 C -0.146 4.146 8 C -0.127 4.127 9 C 0.192 3.808 10 C -0.155 4.155 11 C -0.510 4.510 12 H 0.077 0.923 13 C 0.086 3.914 14 N -0.893 5.893 15 Si 0.875 3.125 16 H -0.291 1.291 17 H -0.303 1.303 18 H -0.220 1.220 19 O -0.349 6.349 20 C -0.154 4.154 21 C 0.061 3.939 22 O -0.381 6.381 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -5.354 12.467 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.144 4.144 3 C 0.084 3.916 4 C -0.239 4.239 5 C -0.174 4.174 6 C 0.061 3.939 7 C -0.184 4.184 8 C -0.165 4.165 9 C 0.155 3.845 10 C -0.212 4.212 11 C -0.547 4.547 12 H 0.095 0.905 13 C -0.118 4.118 14 N -0.530 5.530 15 Si 0.706 3.294 16 H -0.219 1.219 17 H -0.231 1.231 18 H -0.144 1.144 19 O -0.270 6.270 20 C -0.192 4.192 21 C -0.016 4.016 22 O -0.300 6.300 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.705 -5.375 12.415 13.547 hybrid contribution -0.122 0.812 0.247 0.857 sum -0.827 -4.563 12.662 13.485 Atomic orbital electron populations 1.21795 0.95705 1.00755 1.02515 1.21487 0.96465 0.94557 1.01917 1.21395 0.93024 0.92342 0.84883 1.22662 0.99218 1.04081 0.97909 1.22407 0.95877 0.96766 1.02319 1.21624 0.92601 0.91307 0.88320 1.23120 0.95605 1.01132 0.98495 1.23086 0.99402 1.00463 0.93526 1.20353 0.83177 0.88819 0.92157 1.22403 1.01020 0.99477 0.98342 1.20862 1.15387 1.30034 0.88419 0.90471 1.25000 0.96465 0.95654 0.94707 1.69919 1.29585 1.41308 1.12237 0.87167 0.78501 0.79616 0.84145 1.21860 1.23123 1.14396 1.88909 1.32194 1.68452 1.37428 1.22473 0.97350 1.01500 0.97856 1.22511 0.93952 0.83667 1.01427 1.87833 1.79294 1.24448 1.38464 0.92215 0.93459 0.92275 0.90898 0.91936 0.93472 0.91317 0.88751 0.91774 0.90432 0.91619 0.91606 0.91171 0.91764 0.94992 0.92371 0.93587 0.92636 0.91492 0.91082 0.90097 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.34 37.16 0.35 -1.63 16 2 C -0.11 -1.50 5.23 -26.73 -0.14 -1.64 16 3 C 0.12 2.02 0.80 -90.55 -0.07 1.94 16 4 C -0.18 -3.41 7.18 37.16 0.27 -3.15 16 5 C -0.14 -2.23 3.89 -26.69 -0.10 -2.34 16 6 C 0.10 1.78 0.78 -90.09 -0.07 1.71 16 7 C -0.15 -2.35 5.69 -24.88 -0.14 -2.49 16 8 C -0.13 -2.41 6.02 -24.45 -0.15 -2.55 16 9 C 0.19 4.28 0.67 -90.73 -0.06 4.22 16 10 C -0.16 -3.26 8.37 37.16 0.31 -2.95 16 11 C -0.51 -13.84 8.89 -34.44 -0.31 -14.15 16 12 H 0.08 2.27 8.01 -52.49 -0.42 1.85 16 13 C 0.09 2.43 5.45 -17.82 -0.10 2.33 16 14 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.88 21.81 23.64 -169.99 -4.02 17.79 16 16 H -0.29 -7.20 6.89 56.52 0.39 -6.81 16 17 H -0.30 -7.76 7.11 56.52 0.40 -7.35 16 18 H -0.22 -5.15 4.42 56.52 0.25 -4.90 16 19 O -0.35 -7.41 3.65 -35.23 -0.13 -7.54 16 20 C -0.15 -2.43 4.99 -26.69 -0.13 -2.56 16 21 C 0.06 0.98 6.45 37.23 0.24 1.22 16 22 O -0.38 -6.40 9.77 -35.23 -0.34 -6.74 16 23 H 0.06 0.81 6.18 -51.93 -0.32 0.49 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.80 7.82 -51.93 -0.41 0.40 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.82 5.93 -51.93 -0.31 0.51 16 29 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.99 2.65 -51.93 -0.14 1.85 16 31 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 34 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 35 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 36 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 37 H 0.03 0.58 7.37 -51.93 -0.38 0.20 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.03 3.46 -51.93 -0.18 0.85 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 1.11 8.03 -51.93 -0.42 0.70 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.13 5.87 -51.93 -0.30 0.83 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -29.22 311.39 -6.74 -35.96 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.61 Total: 4.07 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -0.11 Total: -22.03 kcal Atomic # 7 Polarization: -26.97 SS G_CDS: 0.77 Total: -26.20 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.47 Total: -14.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.02 Total: 17.79 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.22 -6.74 -35.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.276 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds