Wall clock time and date at job start Mon Mar 30 2020 07:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.66109 * 2 1 4 4 C 1.55095 * 110.60805 * 122.93532 * 2 1 3 5 5 C 1.54340 * 101.96949 * 81.88420 * 4 2 1 6 6 C 1.52496 * 109.95321 * 262.04697 * 5 4 2 7 7 C 1.53282 * 109.19325 * 294.10213 * 6 5 4 8 8 C 1.53187 * 108.96407 * 303.95849 * 7 6 5 9 9 C 1.53088 * 109.27480 * 57.43253 * 8 7 6 10 10 H 1.09002 * 109.48416 * 61.94311 * 9 8 7 11 11 C 1.50697 * 109.48447 * 181.97539 * 9 8 7 12 12 H 1.07997 * 120.00138 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99899 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99735 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99958 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47413 * 270.00258 * 15 13 11 17 17 H 1.48506 * 109.47140 * 30.00601 * 15 13 11 18 18 H 1.48503 * 109.46725 * 150.00433 * 15 13 11 19 19 O 1.42226 * 110.11800 * 139.52691 * 5 4 2 20 20 C 1.53596 * 104.67381 * 20.63002 * 5 4 2 21 21 C 1.52999 * 109.90776 * 121.47348 * 20 5 4 22 22 C 1.53002 * 109.90754 * 242.73455 * 20 5 4 23 23 O 1.43892 * 107.11915 * 2.10374 * 20 5 4 24 24 H 1.08999 * 109.46868 * 306.99546 * 1 2 3 25 25 H 1.08995 * 109.46951 * 66.99443 * 1 2 3 26 26 H 1.08998 * 109.46781 * 186.99295 * 1 2 3 27 27 H 1.09000 * 109.46623 * 182.93659 * 3 2 1 28 28 H 1.08990 * 109.47089 * 302.93212 * 3 2 1 29 29 H 1.08998 * 109.46855 * 62.93922 * 3 2 1 30 30 H 1.09000 * 110.93323 * 323.71580 * 4 2 1 31 31 H 1.08997 * 110.96139 * 200.06293 * 4 2 1 32 32 H 1.09004 * 109.52191 * 174.18416 * 6 5 4 33 33 H 1.08999 * 109.56595 * 54.04503 * 6 5 4 34 34 H 1.09003 * 109.55608 * 184.11534 * 7 6 5 35 35 H 1.08992 * 109.55460 * 63.80195 * 7 6 5 36 36 H 1.09006 * 109.50436 * 297.49904 * 8 7 6 37 37 H 1.08987 * 109.50485 * 177.37604 * 8 7 6 38 38 H 0.97002 * 119.99488 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47246 * 60.00221 * 21 20 5 40 40 H 1.09000 * 109.47056 * 179.97438 * 21 20 5 41 41 H 1.08995 * 109.47673 * 300.00007 * 21 20 5 42 42 H 1.08996 * 109.46956 * 66.15408 * 22 20 5 43 43 H 1.08998 * 109.47079 * 186.15661 * 22 20 5 44 44 H 1.09008 * 109.46777 * 306.15672 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4317 0.0000 4 6 2.0759 -0.7893 1.2184 5 6 1.9891 -2.2475 0.7201 6 6 0.7180 -2.9033 1.2491 7 6 0.8104 -3.0239 2.7744 8 6 2.0814 -3.7985 3.1365 9 6 3.2970 -3.0797 2.5454 10 1 3.3760 -2.0827 2.9787 11 6 4.5455 -3.8638 2.8575 12 1 4.4792 -4.7830 3.4206 13 6 5.7722 -3.4083 2.4233 14 7 5.8528 -2.2891 1.7372 15 14 7.3199 -4.3798 2.8108 16 1 7.8840 -3.9172 4.1041 17 1 6.9873 -5.8242 2.9041 18 1 8.3187 -4.1705 1.7319 19 8 3.1424 -2.9731 1.1275 20 6 1.9354 -2.1330 -0.8106 21 6 3.1050 -2.8992 -1.4317 22 6 0.6084 -2.6915 -1.3286 23 8 2.0383 -0.7349 -1.1347 24 1 -0.3633 0.6184 0.8208 25 1 -0.3633 0.4016 -0.9459 26 1 -0.3633 -1.0200 0.1251 27 1 3.1584 1.4094 -0.0526 28 1 1.6754 1.9687 -0.8625 29 1 1.7606 1.9365 0.9152 30 1 1.4449 -0.6389 2.0943 31 1 3.1081 -0.5117 1.4321 32 1 0.6108 -3.8957 0.8112 33 1 -0.1453 -2.2931 0.9837 34 1 -0.0620 -3.5574 3.1517 35 1 0.8511 -2.0288 3.2172 36 1 2.0214 -4.8075 2.7283 37 1 2.1803 -3.8492 4.2207 38 1 6.7159 -1.9685 1.4320 39 1 3.0431 -3.9497 -1.1474 40 1 3.0598 -2.8137 -2.5174 41 1 4.0452 -2.4805 -1.0728 42 1 -0.2105 -2.0597 -0.9848 43 1 0.6218 -2.7080 -2.4183 44 1 0.4688 -3.7047 -0.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310478286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:59 Heat of formation + Delta-G solvation = -94.530364 kcal Electronic energy + Delta-G solvation = -23515.082560 eV Core-core repulsion = 20432.394169 eV Total energy + Delta-G solvation = -3082.688391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64750 -37.20352 -33.82616 -33.10264 -32.39706 -31.56758 -29.33589 -27.82964 -27.16975 -26.32381 -24.87743 -22.62163 -21.79794 -20.46199 -19.08222 -18.14102 -16.60411 -15.92106 -15.44017 -14.71364 -14.50632 -14.45094 -14.12143 -13.61648 -13.25733 -12.86041 -12.79006 -12.61256 -12.46529 -12.12001 -11.94659 -11.89681 -11.55260 -11.46323 -11.23283 -11.03281 -10.98493 -10.84876 -10.57061 -10.46808 -10.36951 -10.21387 -10.12483 -10.01142 -9.71538 -9.39480 -9.01194 -8.79979 -8.46508 -7.82627 -5.99836 -4.11799 3.30689 3.38294 3.41204 4.22750 4.42429 4.75806 5.09188 5.19758 5.26927 5.32535 5.34518 5.43014 5.54577 5.62499 5.71279 5.80057 5.84061 5.87829 5.94758 5.99258 6.07929 6.11925 6.14549 6.23918 6.28483 6.36456 6.41982 6.44658 6.47620 6.52294 6.62571 6.73117 6.74073 6.85599 6.89062 6.95281 6.99367 7.25225 7.53207 7.62128 7.91107 8.30541 8.80111 9.16082 9.58264 11.07023 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.007570 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.004194 B = 3698.002147 C = 4002.790121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 C -0.135 4.135 4 C -0.163 4.163 5 C 0.098 3.902 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.145 4.145 9 C 0.219 3.781 10 H 0.016 0.984 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.081 3.919 14 N -0.855 5.855 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.285 1.285 19 O -0.333 6.333 20 C 0.116 3.884 21 C -0.123 4.123 22 C -0.173 4.173 23 O -0.360 6.360 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.260 0.740 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 3.310 -2.977 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.192 4.192 4 C -0.201 4.201 5 C 0.056 3.944 6 C -0.180 4.180 7 C -0.160 4.160 8 C -0.183 4.183 9 C 0.164 3.836 10 H 0.034 0.966 11 C -0.565 4.565 12 H 0.080 0.920 13 C -0.126 4.126 14 N -0.491 5.491 15 Si 0.716 3.284 16 H -0.207 1.207 17 H -0.198 1.198 18 H -0.211 1.211 19 O -0.252 6.252 20 C 0.076 3.924 21 C -0.180 4.180 22 C -0.229 4.229 23 O -0.280 6.280 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.372 3.440 -3.394 11.443 hybrid contribution 0.526 -0.456 0.570 0.900 sum -9.846 2.983 -2.824 10.668 Atomic orbital electron populations 1.22643 0.95967 1.02998 1.01817 1.22348 0.92442 0.92837 0.86651 1.21703 1.02220 0.93893 1.01400 1.23737 1.03288 0.96135 0.96929 1.21928 0.88711 0.91096 0.92675 1.22370 0.98015 1.01143 0.96434 1.21706 0.98474 1.00295 0.95498 1.22258 0.95879 0.99747 1.00365 1.19713 0.90951 0.94668 0.78253 0.96623 1.20979 0.90059 1.09778 1.35723 0.91996 1.25031 0.98920 0.94651 0.93985 1.70029 1.24587 1.20004 1.34473 0.86675 0.83145 0.80682 0.77915 1.20661 1.19834 1.21111 1.88328 1.38834 1.72353 1.25636 1.21829 0.95220 0.82099 0.93223 1.21542 0.98585 1.00026 0.97840 1.22659 0.97564 1.01606 1.01118 1.88926 1.83963 1.16582 1.38555 0.92124 0.92301 0.90654 0.91493 0.92612 0.91715 0.91224 0.88634 0.91454 0.91707 0.93227 0.92564 0.92620 0.92621 0.93024 0.91371 0.94164 0.90293 0.91595 0.92676 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 7.96 37.16 0.30 -2.13 16 2 C 0.10 1.61 1.25 -89.51 -0.11 1.50 16 3 C -0.13 -2.00 9.01 37.16 0.33 -1.67 16 4 C -0.16 -3.12 4.05 -24.92 -0.10 -3.22 16 5 C 0.10 1.93 0.87 -89.87 -0.08 1.85 16 6 C -0.14 -2.42 3.59 -26.84 -0.10 -2.52 16 7 C -0.12 -2.11 5.81 -26.49 -0.15 -2.27 16 8 C -0.14 -3.01 5.34 -26.59 -0.14 -3.15 16 9 C 0.22 5.47 2.25 -27.84 -0.06 5.41 16 10 H 0.02 0.43 7.06 -51.93 -0.37 0.07 16 11 C -0.53 -14.56 8.79 -34.44 -0.30 -14.86 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 13 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -24.53 12.84 55.43 0.71 -23.82 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 O -0.33 -8.14 7.42 -35.23 -0.26 -8.40 16 20 C 0.12 2.16 1.15 -90.31 -0.10 2.06 16 21 C -0.12 -2.45 7.94 37.16 0.29 -2.16 16 22 C -0.17 -2.64 7.55 37.16 0.28 -2.36 16 23 O -0.36 -6.93 10.36 -35.23 -0.37 -7.30 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.03 2.61 -51.93 -0.14 0.89 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.23 6.13 -51.93 -0.32 0.91 16 31 H 0.10 2.17 7.66 -51.93 -0.40 1.78 16 32 H 0.07 1.14 6.58 -51.93 -0.34 0.80 16 33 H 0.06 0.96 4.66 -51.93 -0.24 0.72 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.95 6.56 -51.93 -0.34 0.61 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.11 8.14 -51.94 -0.42 0.69 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.37 7.94 -51.93 -0.41 0.96 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.85 7.81 -51.93 -0.41 1.44 16 42 H 0.07 0.92 4.36 -51.93 -0.23 0.69 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.99 6.32 -51.92 -0.33 0.67 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -29.06 317.58 -7.48 -36.53 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.28 Total: 3.40 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -0.04 Total: -21.37 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.71 Total: -23.82 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.63 Total: -15.70 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.06 -7.48 -36.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310478286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.998 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds