Wall clock time and date at job start Mon Mar 30 2020 07:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 110.66109 * 2 1 4 4 C 1.55095 * 110.60805 * 122.93532 * 2 1 3 5 5 C 1.54340 * 101.96949 * 81.88420 * 4 2 1 6 6 C 1.52496 * 109.95321 * 262.04697 * 5 4 2 7 7 C 1.53282 * 109.19325 * 294.10213 * 6 5 4 8 8 C 1.53187 * 108.96407 * 303.95849 * 7 6 5 9 9 C 1.53088 * 109.27480 * 57.43253 * 8 7 6 10 10 H 1.09002 * 109.48416 * 61.94311 * 9 8 7 11 11 C 1.50697 * 109.48447 * 181.97539 * 9 8 7 12 12 H 1.07997 * 120.00138 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99899 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99735 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99958 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47413 * 270.00258 * 15 13 11 17 17 H 1.48506 * 109.47140 * 30.00601 * 15 13 11 18 18 H 1.48503 * 109.46725 * 150.00433 * 15 13 11 19 19 O 1.42226 * 110.11800 * 139.52691 * 5 4 2 20 20 C 1.53596 * 104.67381 * 20.63002 * 5 4 2 21 21 C 1.52999 * 109.90776 * 121.47348 * 20 5 4 22 22 C 1.53002 * 109.90754 * 242.73455 * 20 5 4 23 23 O 1.43892 * 107.11915 * 2.10374 * 20 5 4 24 24 H 1.08999 * 109.46868 * 306.99546 * 1 2 3 25 25 H 1.08995 * 109.46951 * 66.99443 * 1 2 3 26 26 H 1.08998 * 109.46781 * 186.99295 * 1 2 3 27 27 H 1.09000 * 109.46623 * 182.93659 * 3 2 1 28 28 H 1.08990 * 109.47089 * 302.93212 * 3 2 1 29 29 H 1.08998 * 109.46855 * 62.93922 * 3 2 1 30 30 H 1.09000 * 110.93323 * 323.71580 * 4 2 1 31 31 H 1.08997 * 110.96139 * 200.06293 * 4 2 1 32 32 H 1.09004 * 109.52191 * 174.18416 * 6 5 4 33 33 H 1.08999 * 109.56595 * 54.04503 * 6 5 4 34 34 H 1.09003 * 109.55608 * 184.11534 * 7 6 5 35 35 H 1.08992 * 109.55460 * 63.80195 * 7 6 5 36 36 H 1.09006 * 109.50436 * 297.49904 * 8 7 6 37 37 H 1.08987 * 109.50485 * 177.37604 * 8 7 6 38 38 H 0.97002 * 119.99488 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.47246 * 60.00221 * 21 20 5 40 40 H 1.09000 * 109.47056 * 179.97438 * 21 20 5 41 41 H 1.08995 * 109.47673 * 300.00007 * 21 20 5 42 42 H 1.08996 * 109.46956 * 66.15408 * 22 20 5 43 43 H 1.08998 * 109.47079 * 186.15661 * 22 20 5 44 44 H 1.09008 * 109.46777 * 306.15672 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4317 0.0000 4 6 2.0759 -0.7893 1.2184 5 6 1.9891 -2.2475 0.7201 6 6 0.7180 -2.9033 1.2491 7 6 0.8104 -3.0239 2.7744 8 6 2.0814 -3.7985 3.1365 9 6 3.2970 -3.0797 2.5454 10 1 3.3760 -2.0827 2.9787 11 6 4.5455 -3.8638 2.8575 12 1 4.4792 -4.7830 3.4206 13 6 5.7722 -3.4083 2.4233 14 7 5.8528 -2.2891 1.7372 15 14 7.3199 -4.3798 2.8108 16 1 7.8840 -3.9172 4.1041 17 1 6.9873 -5.8242 2.9041 18 1 8.3187 -4.1705 1.7319 19 8 3.1424 -2.9731 1.1275 20 6 1.9354 -2.1330 -0.8106 21 6 3.1050 -2.8992 -1.4317 22 6 0.6084 -2.6915 -1.3286 23 8 2.0383 -0.7349 -1.1347 24 1 -0.3633 0.6184 0.8208 25 1 -0.3633 0.4016 -0.9459 26 1 -0.3633 -1.0200 0.1251 27 1 3.1584 1.4094 -0.0526 28 1 1.6754 1.9687 -0.8625 29 1 1.7606 1.9365 0.9152 30 1 1.4449 -0.6389 2.0943 31 1 3.1081 -0.5117 1.4321 32 1 0.6108 -3.8957 0.8112 33 1 -0.1453 -2.2931 0.9837 34 1 -0.0620 -3.5574 3.1517 35 1 0.8511 -2.0288 3.2172 36 1 2.0214 -4.8075 2.7283 37 1 2.1803 -3.8492 4.2207 38 1 6.7159 -1.9685 1.4320 39 1 3.0431 -3.9497 -1.1474 40 1 3.0598 -2.8137 -2.5174 41 1 4.0452 -2.4805 -1.0728 42 1 -0.2105 -2.0597 -0.9848 43 1 0.6218 -2.7080 -2.4183 44 1 0.4688 -3.7047 -0.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310478286.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:59 Heat of formation + Delta-G solvation = -111.805770 kcal Electronic energy + Delta-G solvation = -23515.831678 eV Core-core repulsion = 20432.394169 eV Total energy + Delta-G solvation = -3083.437509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.11571 -38.82612 -35.28091 -34.85033 -34.14490 -33.18487 -30.88382 -29.18641 -28.81247 -27.62142 -26.63334 -24.14522 -23.55484 -21.89073 -20.55367 -19.70460 -18.60758 -17.37571 -17.03561 -16.47865 -16.19174 -15.97061 -15.54527 -15.08986 -14.69250 -14.63929 -14.22470 -14.01537 -13.86256 -13.64787 -13.42142 -13.12468 -12.99336 -12.87658 -12.79929 -12.73256 -12.65277 -12.45940 -12.33437 -12.22319 -11.79236 -11.78959 -11.67520 -11.47505 -11.23807 -10.98133 -10.74629 -10.46269 -10.38278 -9.59356 -8.11835 -6.31527 1.38309 1.40039 1.50051 2.40304 2.85296 2.99956 3.44714 3.76282 3.85459 3.93888 4.03976 4.04678 4.16423 4.25067 4.37621 4.39443 4.47017 4.55470 4.59880 4.72564 4.74971 4.81252 4.82035 4.89251 4.91163 4.94386 4.97111 5.01045 5.13478 5.14791 5.17015 5.25642 5.29237 5.35095 5.41420 5.42452 5.51787 5.56695 5.62015 5.82159 6.21419 6.27497 6.71091 7.31030 7.45474 8.94084 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.007570 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.004194 B = 3698.002147 C = 4002.790121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 C -0.135 4.135 4 C -0.159 4.159 5 C 0.083 3.917 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.220 3.780 10 H -0.018 1.018 11 C -0.553 4.553 12 H 0.060 0.940 13 C 0.030 3.970 14 N -0.888 5.888 15 Si 0.953 3.047 16 H -0.271 1.271 17 H -0.267 1.267 18 H -0.285 1.285 19 O -0.362 6.362 20 C 0.111 3.889 21 C -0.117 4.117 22 C -0.164 4.164 23 O -0.382 6.382 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.258 0.742 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 3.122 -3.197 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.055 3.945 3 C -0.192 4.192 4 C -0.197 4.197 5 C 0.042 3.958 6 C -0.173 4.173 7 C -0.154 4.154 8 C -0.177 4.177 9 C 0.165 3.835 10 H 0.000 1.000 11 C -0.590 4.590 12 H 0.078 0.922 13 C -0.173 4.173 14 N -0.524 5.524 15 Si 0.778 3.222 16 H -0.197 1.197 17 H -0.191 1.191 18 H -0.211 1.211 19 O -0.281 6.281 20 C 0.072 3.928 21 C -0.174 4.174 22 C -0.221 4.221 23 O -0.303 6.303 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.256 3.249 -3.604 14.116 hybrid contribution 1.466 -0.349 0.630 1.633 sum -11.790 2.900 -2.974 12.500 Atomic orbital electron populations 1.22576 0.92540 1.03829 1.03680 1.22597 0.94891 0.92710 0.84327 1.21737 1.00467 0.93558 1.03404 1.23608 1.00601 0.96622 0.98881 1.22303 0.88616 0.91090 0.93771 1.22357 0.97234 1.01691 0.96019 1.21687 0.97586 1.00241 0.95878 1.22126 0.96082 0.99420 1.00115 1.19488 0.92143 0.92976 0.78914 1.00038 1.21425 0.91843 1.09887 1.35881 0.92162 1.25829 1.02084 0.95546 0.93852 1.70186 1.24984 1.21578 1.35698 0.85660 0.79244 0.79444 0.77863 1.19653 1.19131 1.21115 1.88217 1.41690 1.73329 1.24898 1.21942 0.96441 0.82067 0.92359 1.21440 0.97281 0.99548 0.99130 1.22595 0.95531 1.02116 1.01856 1.88892 1.84864 1.16968 1.39547 0.89881 0.90753 0.90334 0.94347 0.90619 0.89626 0.89787 0.93924 0.90963 0.88407 0.89694 0.92342 0.93107 0.92402 0.93346 0.92018 0.92089 0.95145 0.89547 0.91521 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.92 7.96 71.98 0.57 -3.35 16 2 C 0.09 2.99 1.25 -10.07 -0.01 2.98 16 3 C -0.13 -3.89 9.01 71.98 0.65 -3.24 16 4 C -0.16 -6.16 4.05 31.77 0.13 -6.03 16 5 C 0.08 3.28 0.87 -10.31 -0.01 3.27 16 6 C -0.14 -4.25 3.59 30.52 0.11 -4.14 16 7 C -0.12 -3.73 5.81 30.75 0.18 -3.55 16 8 C -0.14 -5.76 5.34 30.69 0.16 -5.60 16 9 C 0.22 11.42 2.25 29.88 0.07 11.49 16 10 H -0.02 -1.02 7.06 -2.39 -0.02 -1.04 16 11 C -0.55 -31.64 8.79 25.60 0.23 -31.42 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.03 1.72 5.40 84.65 0.46 2.18 16 14 N -0.89 -53.84 12.84 21.45 0.28 -53.56 16 15 Si 0.95 44.85 29.54 68.60 2.03 46.87 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 O -0.36 -18.43 7.42 -148.98 -1.11 -19.54 16 20 C 0.11 4.08 1.15 -10.59 -0.01 4.07 16 21 C -0.12 -4.80 7.94 71.98 0.57 -4.23 16 22 C -0.16 -4.48 7.55 71.98 0.54 -3.94 16 23 O -0.38 -14.49 10.36 -148.98 -1.54 -16.04 16 24 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.74 2.61 -2.39 -0.01 1.74 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.90 6.13 -2.39 -0.01 2.89 16 31 H 0.04 2.08 7.66 -2.39 -0.02 2.06 16 32 H 0.07 2.21 6.58 -2.38 -0.02 2.20 16 33 H 0.10 2.43 4.66 -2.39 -0.01 2.42 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.85 6.56 -2.39 -0.02 1.83 16 36 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.06 2.55 7.94 -2.39 -0.02 2.53 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 42 H 0.09 2.00 4.36 -2.39 -0.01 1.99 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.96 6.32 -2.38 -0.02 1.95 16 Total: -1.00 -67.47 317.58 4.26 -63.21 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.97 Total: 20.56 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.63 Total: -41.50 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.28 Total: -53.56 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -2.65 Total: -35.58 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.47 4.26 -63.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310478286.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.592 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds