Wall clock time and date at job start Mon Mar 30 2020 07:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52905 * 1 3 3 C 1.53561 * 109.74087 * 2 1 4 4 C 1.54967 * 111.07277 * 238.26118 * 2 1 3 5 5 C 1.54520 * 102.52833 * 274.65026 * 4 2 1 6 6 C 1.52371 * 109.18939 * 215.40995 * 5 4 2 7 7 C 1.53909 * 108.18216 * 289.99184 * 6 5 4 8 8 C 1.52943 * 107.70667 * 296.67569 * 7 6 5 9 9 C 1.52546 * 110.27314 * 59.09147 * 8 7 6 10 10 H 1.11021 * 107.07144 * 196.26937 * 9 8 7 11 11 C 1.50806 * 109.85331 * 80.88601 * 9 8 7 12 12 H 1.07995 * 120.00354 * 353.11604 * 11 9 8 13 13 C 1.37880 * 119.99961 * 173.12373 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.40789 * 113.60559 * 315.17995 * 9 8 7 20 20 C 1.53862 * 103.79874 * 334.52301 * 5 4 2 21 21 C 1.53282 * 109.64885 * 127.52912 * 20 5 4 22 22 C 1.53114 * 111.35703 * 248.20404 * 20 5 4 23 23 O 1.43625 * 107.84225 * 7.60160 * 20 5 4 24 24 H 1.08998 * 109.46843 * 299.07188 * 1 2 3 25 25 H 1.08998 * 109.46828 * 59.06596 * 1 2 3 26 26 H 1.08994 * 109.47467 * 179.07260 * 1 2 3 27 27 H 1.09000 * 109.46921 * 181.92853 * 3 2 1 28 28 H 1.08997 * 109.46869 * 301.93257 * 3 2 1 29 29 H 1.09005 * 109.46593 * 61.92993 * 3 2 1 30 30 H 1.09367 * 110.51862 * 157.04214 * 4 2 1 31 31 H 1.08559 * 111.05030 * 34.36569 * 4 2 1 32 32 H 1.08759 * 110.58721 * 48.34869 * 6 5 4 33 33 H 1.08837 * 110.56713 * 171.98175 * 6 5 4 34 34 H 1.08657 * 109.62053 * 56.77094 * 7 6 5 35 35 H 1.08902 * 109.23254 * 177.43561 * 7 6 5 36 36 H 1.09256 * 109.36451 * 298.55722 * 8 7 6 37 37 H 1.09265 * 109.32250 * 179.55441 * 8 7 6 38 38 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 39 39 H 1.09003 * 109.47123 * 60.00166 * 21 20 5 40 40 H 1.09000 * 109.47488 * 180.02562 * 21 20 5 41 41 H 1.09004 * 109.47064 * 300.00649 * 21 20 5 42 42 H 1.09004 * 109.47467 * 60.00123 * 22 20 5 43 43 H 1.08999 * 109.47130 * 180.02562 * 22 20 5 44 44 H 1.08996 * 109.47157 * 299.99889 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5291 0.0000 0.0000 3 6 2.0477 1.4454 0.0000 4 6 2.0862 -0.7607 -1.2298 5 6 2.0926 -2.2270 -0.7423 6 6 3.3011 -2.9450 -1.3303 7 6 3.0687 -3.1173 -2.8419 8 6 1.8450 -4.0164 -3.0249 9 6 0.6241 -3.3891 -2.3595 10 1 -0.1389 -4.1892 -2.2580 11 6 0.0300 -2.3395 -3.2649 12 1 0.5409 -2.0586 -4.1739 13 6 -1.1655 -1.7385 -2.9320 14 7 -1.7879 -2.0809 -1.8252 15 14 -1.9017 -0.4390 -4.0538 16 1 -1.4021 0.9010 -3.6537 17 1 -1.5062 -0.7156 -5.4582 18 1 -3.3822 -0.4691 -3.9414 19 8 0.8837 -2.8760 -1.0744 20 6 2.1963 -2.1045 0.7879 21 6 1.0782 -2.9197 1.4472 22 6 3.5484 -2.6112 1.2975 23 8 2.0622 -0.7156 1.1283 24 1 -0.3633 0.4993 0.8982 25 1 -0.3633 0.5283 -0.8815 26 1 -0.3634 -1.0274 -0.0166 27 1 3.1372 1.4404 -0.0346 28 1 1.6588 1.9709 -0.8721 29 1 1.7152 1.9506 0.9069 30 1 3.1042 -0.4307 -1.4558 31 1 1.4461 -0.6239 -2.0958 32 1 4.2030 -2.3534 -1.1901 33 1 3.4078 -3.9356 -0.8923 34 1 2.8957 -2.1462 -3.2976 35 1 3.9433 -3.5887 -3.2879 36 1 2.0434 -4.9935 -2.5782 37 1 1.6510 -4.1502 -4.0918 38 1 -1.4061 -2.7565 -1.2433 39 1 1.1747 -3.9670 1.1608 40 1 1.1540 -2.8306 2.5309 41 1 0.1103 -2.5410 1.1187 42 1 4.3493 -2.0241 0.8482 43 1 3.5886 -2.5110 2.3822 44 1 3.6696 -3.6596 1.0251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310478287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:03 Heat of formation + Delta-G solvation = -110.363153 kcal Electronic energy + Delta-G solvation = -23995.744676 eV Core-core repulsion = 20912.369724 eV Total energy + Delta-G solvation = -3083.374953 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33557 -37.29129 -34.06284 -33.04390 -32.57197 -31.45541 -29.39319 -27.21296 -26.95807 -26.20661 -24.38671 -22.78054 -22.31202 -20.46526 -19.08976 -18.34355 -16.69640 -15.86551 -15.13803 -14.57801 -14.29606 -14.12119 -13.83536 -13.63387 -13.42064 -13.26750 -12.64115 -12.40761 -12.11559 -12.01128 -11.94605 -11.71434 -11.59546 -11.34156 -11.31370 -11.13560 -10.94157 -10.89686 -10.69933 -10.39944 -10.25309 -10.16625 -10.09127 -9.92101 -9.62307 -9.21401 -8.99605 -8.71121 -8.33967 -7.67809 -6.28806 -4.07547 3.40756 3.43583 3.58788 4.29172 4.51866 4.57428 5.10072 5.32152 5.34467 5.46814 5.54324 5.58225 5.60663 5.70361 5.77224 5.80955 5.92150 5.97771 6.04447 6.13414 6.17850 6.22768 6.25860 6.30051 6.35153 6.37449 6.44898 6.49171 6.56490 6.63846 6.67820 6.77743 6.86297 6.89534 6.90183 6.99468 7.08882 7.40023 7.48810 7.77012 8.14702 8.40682 8.92765 9.14638 9.74380 11.10165 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.010589 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.506931 B = 2643.606051 C = 3306.052847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.106 3.894 3 C -0.138 4.138 4 C -0.165 4.165 5 C 0.135 3.865 6 C -0.136 4.136 7 C -0.116 4.116 8 C -0.134 4.134 9 C 0.208 3.792 10 H 0.043 0.957 11 C -0.624 4.624 12 H 0.045 0.955 13 C 0.042 3.958 14 N -0.886 5.886 15 Si 1.053 2.947 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.284 1.284 19 O -0.374 6.374 20 C 0.112 3.888 21 C -0.141 4.141 22 C -0.142 4.142 23 O -0.371 6.371 24 H 0.039 0.961 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.283 0.717 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 0.823 3.153 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.067 3.933 3 C -0.196 4.196 4 C -0.203 4.203 5 C 0.094 3.906 6 C -0.174 4.174 7 C -0.153 4.153 8 C -0.172 4.172 9 C 0.153 3.847 10 H 0.061 0.939 11 C -0.662 4.662 12 H 0.063 0.937 13 C -0.168 4.168 14 N -0.521 5.521 15 Si 0.883 3.117 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.210 1.210 19 O -0.294 6.294 20 C 0.073 3.927 21 C -0.199 4.199 22 C -0.199 4.199 23 O -0.292 6.292 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.333 1.887 3.290 8.256 hybrid contribution 1.524 -0.975 -0.463 1.867 sum 8.857 0.912 2.827 9.342 Atomic orbital electron populations 1.22162 0.93238 1.05539 1.00218 1.22347 0.94345 0.91392 0.85183 1.21929 1.00670 0.95183 1.01780 1.23769 1.00771 0.95789 0.99945 1.21446 0.86112 0.91368 0.91707 1.22197 0.97912 1.00314 0.96954 1.21578 0.97300 1.00842 0.95590 1.22005 0.96829 0.97123 1.01213 1.19607 0.90640 0.93518 0.80897 0.93915 1.22361 1.08905 1.26797 1.08109 0.93686 1.25500 0.94009 0.99223 0.98025 1.70632 1.40710 1.29611 1.11146 0.83790 0.76568 0.76152 0.75228 1.21488 1.21727 1.21017 1.86579 1.34146 1.74432 1.34194 1.22050 0.94965 0.82570 0.93131 1.21981 0.99894 0.99688 0.98316 1.22011 0.96130 1.00751 1.01005 1.88524 1.84360 1.18582 1.37690 0.94239 0.92176 0.88609 0.92817 0.91647 0.92582 0.92543 0.87439 0.91867 0.91842 0.91323 0.93504 0.94426 0.92088 0.90530 0.92161 0.93895 0.90779 0.92472 0.92427 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.86 37.11 0.33 -2.96 16 2 C 0.11 2.05 1.19 -89.34 -0.11 1.94 16 3 C -0.14 -2.26 8.91 37.45 0.33 -1.92 16 4 C -0.17 -3.28 4.28 -24.89 -0.11 -3.39 16 5 C 0.13 2.62 0.78 -89.69 -0.07 2.55 16 6 C -0.14 -2.34 3.54 -26.58 -0.09 -2.43 16 7 C -0.12 -2.08 5.89 -26.29 -0.15 -2.24 16 8 C -0.13 -2.69 5.43 -26.99 -0.15 -2.84 16 9 C 0.21 4.91 2.33 -28.06 -0.07 4.84 16 10 H 0.04 1.12 7.98 -50.77 -0.41 0.71 16 11 C -0.62 -16.08 6.97 -34.39 -0.24 -16.32 16 12 H 0.04 1.19 7.76 -52.49 -0.41 0.78 16 13 C 0.04 1.10 5.42 -17.82 -0.10 1.00 16 14 N -0.89 -24.58 12.66 55.43 0.70 -23.88 16 15 Si 1.05 24.21 29.90 -169.99 -5.08 19.13 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 O -0.37 -8.39 5.16 -34.26 -0.18 -8.56 16 20 C 0.11 2.06 1.20 -89.97 -0.11 1.95 16 21 C -0.14 -2.62 7.88 37.30 0.29 -2.33 16 22 C -0.14 -2.14 7.70 37.22 0.29 -1.85 16 23 O -0.37 -7.24 10.12 -35.23 -0.36 -7.60 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.10 2.29 4.35 -51.93 -0.23 2.06 16 27 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.02 7.53 -51.72 -0.39 0.63 16 31 H 0.11 2.46 6.30 -52.18 -0.33 2.13 16 32 H 0.06 0.98 7.00 -52.06 -0.36 0.62 16 33 H 0.06 1.04 6.98 -52.02 -0.36 0.68 16 34 H 0.07 1.33 7.30 -52.12 -0.38 0.95 16 35 H 0.05 0.73 8.13 -51.98 -0.42 0.31 16 36 H 0.04 0.70 8.16 -51.78 -0.42 0.28 16 37 H 0.06 1.23 8.00 -51.78 -0.41 0.82 16 38 H 0.28 7.97 6.35 -40.82 -0.26 7.71 16 39 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.57 5.91 -51.93 -0.31 1.27 16 42 H 0.06 0.82 7.28 -51.93 -0.38 0.45 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.91 6.85 -51.93 -0.36 0.55 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -26.81 320.42 -7.63 -34.43 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.59 Total: 5.65 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: 0.06 Total: -23.99 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.70 Total: -23.88 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.53 Total: -16.16 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.81 -7.63 -34.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310478287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.929 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds