Wall clock time and date at job start Mon Mar 30 2020 07:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52905 * 1 3 3 C 1.53561 * 109.74087 * 2 1 4 4 C 1.54967 * 111.07277 * 238.26118 * 2 1 3 5 5 C 1.54520 * 102.52833 * 274.65026 * 4 2 1 6 6 C 1.52371 * 109.18939 * 215.40995 * 5 4 2 7 7 C 1.53909 * 108.18216 * 289.99184 * 6 5 4 8 8 C 1.52943 * 107.70667 * 296.67569 * 7 6 5 9 9 C 1.52546 * 110.27314 * 59.09147 * 8 7 6 10 10 H 1.11021 * 107.07144 * 196.26937 * 9 8 7 11 11 C 1.50806 * 109.85331 * 80.88601 * 9 8 7 12 12 H 1.07995 * 120.00354 * 353.11604 * 11 9 8 13 13 C 1.37880 * 119.99961 * 173.12373 * 11 9 8 14 14 N 1.31517 * 120.00210 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00019 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 269.99914 * 15 13 11 17 17 H 1.48503 * 109.47399 * 29.99403 * 15 13 11 18 18 H 1.48498 * 109.47295 * 150.00010 * 15 13 11 19 19 O 1.40789 * 113.60559 * 315.17995 * 9 8 7 20 20 C 1.53862 * 103.79874 * 334.52301 * 5 4 2 21 21 C 1.53282 * 109.64885 * 127.52912 * 20 5 4 22 22 C 1.53114 * 111.35703 * 248.20404 * 20 5 4 23 23 O 1.43625 * 107.84225 * 7.60160 * 20 5 4 24 24 H 1.08998 * 109.46843 * 299.07188 * 1 2 3 25 25 H 1.08998 * 109.46828 * 59.06596 * 1 2 3 26 26 H 1.08994 * 109.47467 * 179.07260 * 1 2 3 27 27 H 1.09000 * 109.46921 * 181.92853 * 3 2 1 28 28 H 1.08997 * 109.46869 * 301.93257 * 3 2 1 29 29 H 1.09005 * 109.46593 * 61.92993 * 3 2 1 30 30 H 1.09367 * 110.51862 * 157.04214 * 4 2 1 31 31 H 1.08559 * 111.05030 * 34.36569 * 4 2 1 32 32 H 1.08759 * 110.58721 * 48.34869 * 6 5 4 33 33 H 1.08837 * 110.56713 * 171.98175 * 6 5 4 34 34 H 1.08657 * 109.62053 * 56.77094 * 7 6 5 35 35 H 1.08902 * 109.23254 * 177.43561 * 7 6 5 36 36 H 1.09256 * 109.36451 * 298.55722 * 8 7 6 37 37 H 1.09265 * 109.32250 * 179.55441 * 8 7 6 38 38 H 0.97000 * 119.99462 * 359.97438 * 14 13 11 39 39 H 1.09003 * 109.47123 * 60.00166 * 21 20 5 40 40 H 1.09000 * 109.47488 * 180.02562 * 21 20 5 41 41 H 1.09004 * 109.47064 * 300.00649 * 21 20 5 42 42 H 1.09004 * 109.47467 * 60.00123 * 22 20 5 43 43 H 1.08999 * 109.47130 * 180.02562 * 22 20 5 44 44 H 1.08996 * 109.47157 * 299.99889 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5291 0.0000 0.0000 3 6 2.0477 1.4454 0.0000 4 6 2.0862 -0.7607 -1.2298 5 6 2.0926 -2.2270 -0.7423 6 6 3.3011 -2.9450 -1.3303 7 6 3.0687 -3.1173 -2.8419 8 6 1.8450 -4.0164 -3.0249 9 6 0.6241 -3.3891 -2.3595 10 1 -0.1389 -4.1892 -2.2580 11 6 0.0300 -2.3395 -3.2649 12 1 0.5409 -2.0586 -4.1739 13 6 -1.1655 -1.7385 -2.9320 14 7 -1.7879 -2.0809 -1.8252 15 14 -1.9017 -0.4390 -4.0538 16 1 -1.4021 0.9010 -3.6537 17 1 -1.5062 -0.7156 -5.4582 18 1 -3.3822 -0.4691 -3.9414 19 8 0.8837 -2.8760 -1.0744 20 6 2.1963 -2.1045 0.7879 21 6 1.0782 -2.9197 1.4472 22 6 3.5484 -2.6112 1.2975 23 8 2.0622 -0.7156 1.1283 24 1 -0.3633 0.4993 0.8982 25 1 -0.3633 0.5283 -0.8815 26 1 -0.3634 -1.0274 -0.0166 27 1 3.1372 1.4404 -0.0346 28 1 1.6588 1.9709 -0.8721 29 1 1.7152 1.9506 0.9069 30 1 3.1042 -0.4307 -1.4558 31 1 1.4461 -0.6239 -2.0958 32 1 4.2030 -2.3534 -1.1901 33 1 3.4078 -3.9356 -0.8923 34 1 2.8957 -2.1462 -3.2976 35 1 3.9433 -3.5887 -3.2879 36 1 2.0434 -4.9935 -2.5782 37 1 1.6510 -4.1502 -4.0918 38 1 -1.4061 -2.7565 -1.2433 39 1 1.1747 -3.9670 1.1608 40 1 1.1540 -2.8306 2.5309 41 1 0.1103 -2.5410 1.1187 42 1 4.3493 -2.0241 0.8482 43 1 3.5886 -2.5110 2.3822 44 1 3.6696 -3.6596 1.0251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310478287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:02 Heat of formation + Delta-G solvation = -124.152314 kcal Electronic energy + Delta-G solvation = -23996.342619 eV Core-core repulsion = 20912.369724 eV Total energy + Delta-G solvation = -3083.972896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86375 -38.92098 -35.62536 -34.66286 -34.32126 -33.10656 -30.94006 -28.71054 -28.52829 -27.68643 -26.18590 -24.33635 -23.99674 -21.97620 -20.63539 -20.03613 -18.47798 -17.42317 -16.65461 -16.25825 -15.84490 -15.66123 -15.61383 -15.34542 -14.99731 -14.77701 -14.08429 -13.94325 -13.67273 -13.48856 -13.41117 -13.21541 -13.14779 -12.90014 -12.78444 -12.68834 -12.54797 -12.49415 -12.43289 -11.99063 -11.94409 -11.74265 -11.66298 -11.49462 -11.19944 -10.90559 -10.59521 -10.36128 -10.27816 -9.50759 -8.39242 -6.17736 1.51471 1.57014 1.73568 2.59561 2.83879 2.94002 3.45794 3.65473 3.85157 3.92114 4.09322 4.12596 4.16527 4.28278 4.32023 4.36035 4.41869 4.56496 4.68408 4.74596 4.77107 4.83379 4.85507 4.87169 4.90967 4.97082 4.97779 5.05881 5.08714 5.10386 5.16531 5.22310 5.30929 5.33734 5.39585 5.48472 5.50288 5.63689 5.74810 6.11720 6.26989 6.33733 6.80564 7.38827 7.73809 8.97728 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.017904 B = 0.010589 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.506931 B = 2643.606051 C = 3306.052847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.104 3.896 3 C -0.133 4.133 4 C -0.163 4.163 5 C 0.122 3.878 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.132 4.132 9 C 0.212 3.788 10 H 0.004 0.996 11 C -0.624 4.624 12 H 0.035 0.965 13 C 0.003 3.997 14 N -0.907 5.907 15 Si 1.088 2.912 16 H -0.278 1.278 17 H -0.278 1.278 18 H -0.288 1.288 19 O -0.386 6.386 20 C 0.107 3.893 21 C -0.137 4.137 22 C -0.135 4.135 23 O -0.376 6.376 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 1.270 3.509 12.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.065 3.935 3 C -0.190 4.190 4 C -0.200 4.200 5 C 0.082 3.918 6 C -0.168 4.168 7 C -0.148 4.148 8 C -0.169 4.169 9 C 0.157 3.843 10 H 0.021 0.979 11 C -0.662 4.662 12 H 0.054 0.946 13 C -0.201 4.201 14 N -0.543 5.543 15 Si 0.913 3.087 16 H -0.204 1.204 17 H -0.203 1.203 18 H -0.214 1.214 19 O -0.306 6.306 20 C 0.068 3.932 21 C -0.194 4.194 22 C -0.192 4.192 23 O -0.296 6.296 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.088 2.330 3.644 10.977 hybrid contribution 0.642 -1.148 -0.543 1.423 sum 10.731 1.182 3.102 11.232 Atomic orbital electron populations 1.22057 0.95432 1.03455 0.99623 1.22357 0.92775 0.93291 0.85097 1.21895 1.01755 0.92889 1.02477 1.23683 1.01089 0.96501 0.98765 1.21772 0.85961 0.91196 0.92845 1.22199 0.97530 1.01127 0.95905 1.21547 0.97184 0.99570 0.96538 1.21919 0.96485 0.98148 1.00394 1.19357 0.91545 0.92053 0.81372 0.97853 1.22539 1.08874 1.26804 1.08002 0.94646 1.26491 0.94778 1.00467 0.98396 1.70730 1.41197 1.30357 1.12000 0.83327 0.75771 0.74952 0.74647 1.20440 1.20312 1.21377 1.86518 1.36312 1.74810 1.32945 1.22240 0.96723 0.82112 0.92164 1.21917 0.98400 0.99730 0.99350 1.21985 0.93876 1.01611 1.01762 1.88517 1.84116 1.19161 1.37814 0.93513 0.93950 0.91451 0.90988 0.91238 0.91711 0.90389 0.90894 0.89220 0.90539 0.93090 0.90263 0.92889 0.92800 0.91982 0.91960 0.92236 0.94437 0.91201 0.91276 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 8.86 71.95 0.64 -5.81 16 2 C 0.10 3.90 1.19 -9.96 -0.01 3.89 16 3 C -0.13 -4.04 8.91 72.17 0.64 -3.39 16 4 C -0.16 -6.28 4.28 31.78 0.14 -6.15 16 5 C 0.12 4.60 0.78 -10.19 -0.01 4.59 16 6 C -0.13 -4.03 3.54 30.69 0.11 -3.92 16 7 C -0.11 -3.71 5.89 30.88 0.18 -3.53 16 8 C -0.13 -5.19 5.43 30.42 0.17 -5.03 16 9 C 0.21 10.27 2.33 29.73 0.07 10.34 16 10 H 0.00 0.21 7.98 -1.29 -0.01 0.20 16 11 C -0.62 -33.08 6.97 25.63 0.18 -32.90 16 12 H 0.04 1.90 7.76 -2.91 -0.02 1.88 16 13 C 0.00 0.16 5.42 84.65 0.46 0.62 16 14 N -0.91 -52.54 12.66 21.45 0.27 -52.27 16 15 Si 1.09 49.72 29.90 68.60 2.05 51.77 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 19 O -0.39 -17.62 5.16 -145.51 -0.75 -18.38 16 20 C 0.11 3.70 1.20 -10.37 -0.01 3.69 16 21 C -0.14 -5.01 7.88 72.08 0.57 -4.44 16 22 C -0.14 -3.54 7.70 72.02 0.55 -2.98 16 23 O -0.38 -13.92 10.12 -148.98 -1.51 -15.43 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 3.35 4.35 -2.39 -0.01 3.33 16 27 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.08 2.62 7.53 -2.19 -0.02 2.61 16 31 H 0.07 3.35 6.30 -2.62 -0.02 3.34 16 32 H 0.09 2.35 7.00 -2.51 -0.02 2.33 16 33 H 0.08 2.20 6.98 -2.47 -0.02 2.18 16 34 H 0.05 1.89 7.30 -2.57 -0.02 1.87 16 35 H 0.08 2.17 8.13 -2.44 -0.02 2.15 16 36 H 0.05 1.91 8.16 -2.25 -0.02 1.89 16 37 H 0.05 2.16 8.00 -2.25 -0.02 2.14 16 38 H 0.27 16.08 6.35 -92.71 -0.59 15.49 16 39 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.64 5.91 -2.39 -0.01 1.62 16 42 H 0.07 1.67 7.28 -2.39 -0.02 1.65 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.87 6.85 -2.39 -0.02 1.86 16 Total: -1.00 -59.74 320.42 4.88 -54.87 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 1.14 Total: 24.47 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 3.67 Total: -45.03 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.27 Total: -52.27 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -2.26 Total: -33.81 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.05 Total: 51.77 kcal Total: -59.74 4.88 -54.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310478287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.286 kcal (2) G-P(sol) polarization free energy of solvation -59.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds