Wall clock time and date at job start Mon Mar 30 2020 07:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.52218 * 2 1 4 4 C 1.55257 * 110.58806 * 237.03452 * 2 1 3 5 5 C 1.53612 * 101.78156 * 277.49728 * 4 2 1 6 6 C 1.53743 * 111.02012 * 100.57191 * 5 4 2 7 7 C 1.55022 * 101.91856 * 85.65282 * 6 5 4 8 8 C 1.54184 * 104.25605 * 19.69168 * 7 6 5 9 9 C 1.52996 * 109.85608 * 121.21198 * 8 7 6 10 10 C 1.50698 * 109.85953 * 242.28951 * 8 7 6 11 11 H 1.08000 * 120.00158 * 359.97438 * 10 8 7 12 12 C 1.37878 * 119.99866 * 180.02562 * 10 8 7 13 13 N 1.31521 * 119.99983 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00075 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47027 * 89.99454 * 14 12 10 16 16 H 1.48500 * 109.46840 * 209.99867 * 14 12 10 17 17 H 1.48501 * 109.46602 * 329.99574 * 14 12 10 18 18 O 1.42895 * 111.68697 * 217.72034 * 5 4 2 19 19 C 1.52895 * 105.41522 * 339.76362 * 5 4 2 20 20 C 1.52995 * 109.98496 * 117.11425 * 19 5 4 21 21 C 1.53004 * 109.98616 * 238.42539 * 19 5 4 22 22 O 1.44095 * 106.83378 * 357.76834 * 19 5 4 23 23 H 1.08997 * 109.47099 * 288.15428 * 1 2 3 24 24 H 1.08997 * 109.47123 * 48.15186 * 1 2 3 25 25 H 1.08998 * 109.47039 * 168.14996 * 1 2 3 26 26 H 1.09005 * 109.46835 * 181.34670 * 3 2 1 27 27 H 1.09001 * 109.47204 * 301.34449 * 3 2 1 28 28 H 1.09003 * 109.47306 * 61.35268 * 3 2 1 29 29 H 1.09000 * 110.96703 * 159.37082 * 4 2 1 30 30 H 1.09000 * 110.96803 * 35.61572 * 4 2 1 31 31 H 1.08997 * 110.94053 * 327.49219 * 6 5 4 32 32 H 1.09003 * 110.93987 * 203.80402 * 6 5 4 33 33 H 1.09008 * 110.47207 * 261.00220 * 7 6 5 34 34 H 1.09000 * 110.59121 * 138.44647 * 7 6 5 35 35 H 1.09002 * 109.47413 * 60.00075 * 9 8 7 36 36 H 1.09001 * 109.47243 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47237 * 300.00291 * 9 8 7 38 38 H 0.97003 * 119.99443 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47099 * 67.35741 * 20 19 5 40 40 H 1.09006 * 109.46863 * 187.35166 * 20 19 5 41 41 H 1.08996 * 109.47645 * 307.35153 * 20 19 5 42 42 H 1.08996 * 109.46917 * 60.00339 * 21 19 5 43 43 H 1.08996 * 109.46895 * 179.97438 * 21 19 5 44 44 H 1.08994 * 109.47003 * 299.99859 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0664 1.4329 0.0000 4 6 2.0760 -0.7909 -1.2194 5 6 2.0026 -2.2390 -0.7124 6 6 0.7641 -2.9573 -1.2726 7 6 1.2829 -3.4705 -2.6403 8 6 2.8178 -3.4511 -2.4957 9 6 3.3787 -4.8568 -2.7198 10 6 3.4142 -2.4941 -3.4954 11 1 2.7717 -1.9494 -4.1713 12 6 4.7803 -2.3147 -3.5479 13 7 5.5628 -2.9784 -2.7251 14 14 5.5195 -1.1278 -4.7866 15 1 5.6149 0.2244 -4.1805 16 1 6.8758 -1.5949 -5.1710 17 1 4.6555 -1.0698 -5.9930 18 8 3.1191 -3.0117 -1.1578 19 6 1.9458 -2.1336 0.8119 20 6 0.6227 -2.7039 1.3265 21 6 3.1200 -2.8931 1.4327 22 8 2.0381 -0.7328 1.1370 23 1 -0.3633 0.3202 0.9765 24 1 -0.3633 0.6856 -0.7655 25 1 -0.3633 -1.0057 -0.2110 26 1 3.1560 1.4129 -0.0242 27 1 1.6931 1.9606 -0.8777 28 1 1.7324 1.9459 0.9019 29 1 3.1049 -0.5064 -1.4398 30 1 1.4386 -0.6506 -2.0924 31 1 -0.0632 -2.2604 -1.4062 32 1 0.4719 -3.7881 -0.6303 33 1 0.9671 -2.8034 -3.4425 34 1 0.9303 -4.4846 -2.8281 35 1 3.1159 -5.1975 -3.7213 36 1 4.4635 -4.8361 -2.6157 37 1 2.9562 -5.5385 -1.9816 38 1 6.5238 -2.8518 -2.7618 39 1 0.5982 -3.7795 1.1516 40 1 0.5336 -2.5074 2.3950 41 1 -0.2062 -2.2311 0.7998 42 1 4.0577 -2.4650 1.0783 43 1 3.0717 -2.8121 2.5186 44 1 3.0674 -3.9426 1.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310527377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:37 Heat of formation + Delta-G solvation = -89.137674 kcal Electronic energy + Delta-G solvation = -23646.430989 eV Core-core repulsion = 20563.976442 eV Total energy + Delta-G solvation = -3082.454547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58409 -37.43706 -33.87055 -32.84884 -31.68981 -30.98887 -29.36551 -27.72433 -27.08953 -26.22779 -25.24174 -23.09959 -21.39834 -19.85413 -19.28666 -18.59644 -16.49946 -15.74028 -15.36943 -14.66769 -14.59717 -13.96825 -13.72473 -13.51293 -13.28970 -12.71662 -12.52784 -12.32707 -12.18233 -12.05374 -11.94506 -11.81680 -11.48689 -11.30943 -11.20304 -11.09200 -10.87190 -10.81602 -10.66252 -10.47512 -10.40836 -10.19599 -10.00806 -9.87500 -9.53851 -9.35004 -9.15567 -9.06480 -8.44928 -7.87754 -5.92717 -4.08583 3.29224 3.36991 3.38721 4.22024 4.42444 4.82124 5.15514 5.21809 5.30125 5.36397 5.38145 5.46703 5.65698 5.66468 5.75138 5.83502 5.88629 5.99441 6.02562 6.08850 6.08962 6.22443 6.26443 6.32816 6.38712 6.45756 6.46445 6.54417 6.63499 6.68578 6.73323 6.79798 6.85387 6.94169 7.03330 7.07103 7.15736 7.50059 7.59307 7.80344 8.06783 8.37545 8.64228 9.00869 9.62093 11.08290 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.008940 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.452267 B = 3131.159506 C = 3661.203150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.096 3.904 6 C -0.149 4.149 7 C -0.143 4.143 8 C 0.225 3.775 9 C -0.131 4.131 10 C -0.534 4.534 11 H 0.054 0.946 12 C 0.083 3.917 13 N -0.858 5.858 14 Si 0.880 3.120 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.275 1.275 18 O -0.330 6.330 19 C 0.110 3.890 20 C -0.165 4.165 21 C -0.123 4.123 22 O -0.363 6.363 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.036 0.964 36 H 0.091 0.909 37 H 0.013 0.987 38 H 0.258 0.742 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.060 2.496 5.270 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.051 3.949 3 C -0.192 4.192 4 C -0.175 4.175 5 C 0.055 3.945 6 C -0.186 4.186 7 C -0.181 4.181 8 C 0.188 3.812 9 C -0.189 4.189 10 C -0.572 4.572 11 H 0.072 0.928 12 C -0.122 4.122 13 N -0.495 5.495 14 Si 0.708 3.292 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 O -0.249 6.249 19 C 0.070 3.930 20 C -0.222 4.222 21 C -0.180 4.180 22 O -0.284 6.284 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.109 0.891 37 H 0.032 0.968 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.585 2.487 5.627 10.562 hybrid contribution 0.146 0.704 -1.086 1.303 sum -8.439 3.191 4.541 10.100 Atomic orbital electron populations 1.22523 0.95851 1.02737 1.01793 1.22517 0.92633 0.92862 0.86924 1.21704 1.01968 0.94015 1.01480 1.23315 1.03238 0.94822 0.96115 1.22274 0.88246 0.92190 0.91827 1.23228 0.97616 0.99853 0.97908 1.23141 0.99288 0.99644 0.96003 1.19701 0.87571 0.92675 0.81286 1.21795 1.05132 0.94751 0.97179 1.21349 0.91823 1.25847 1.18181 0.92777 1.24946 0.97300 0.95168 0.94821 1.69942 1.03863 1.39949 1.35747 0.86801 0.78658 0.81772 0.81946 1.20638 1.21242 1.19999 1.88904 1.36474 1.67700 1.31818 1.21788 0.95279 0.82204 0.93695 1.22547 0.97495 1.01109 1.01076 1.21561 0.98038 1.00133 0.98314 1.88948 1.84228 1.16581 1.38596 0.92372 0.92090 0.91175 0.91786 0.91598 0.92600 0.89029 0.90856 0.91707 0.91227 0.91954 0.92936 0.94467 0.89076 0.96823 0.93160 0.91620 0.92608 0.91672 0.91135 0.93820 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.05 37.16 0.30 -2.12 16 2 C 0.09 1.52 1.25 -89.42 -0.11 1.41 16 3 C -0.13 -2.02 8.99 37.16 0.33 -1.69 16 4 C -0.14 -2.73 4.17 -25.22 -0.11 -2.83 16 5 C 0.10 1.93 0.87 -89.97 -0.08 1.86 16 6 C -0.15 -2.66 4.30 -25.28 -0.11 -2.77 16 7 C -0.14 -2.90 6.16 -25.04 -0.15 -3.05 16 8 C 0.22 5.40 0.72 -91.16 -0.07 5.34 16 9 C -0.13 -3.13 8.45 37.16 0.31 -2.82 16 10 C -0.53 -14.01 7.23 -34.44 -0.25 -14.25 16 11 H 0.05 1.42 7.33 -52.49 -0.38 1.03 16 12 C 0.08 2.23 5.26 -17.82 -0.09 2.13 16 13 N -0.86 -24.04 10.92 55.43 0.61 -23.44 16 14 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 O -0.33 -8.02 8.19 -35.23 -0.29 -8.31 16 19 C 0.11 2.01 1.15 -90.67 -0.10 1.91 16 20 C -0.17 -2.49 7.25 37.15 0.27 -2.22 16 21 C -0.12 -2.32 7.97 37.16 0.30 -2.02 16 22 O -0.36 -6.87 10.38 -35.23 -0.37 -7.24 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.07 0.99 3.01 -51.93 -0.16 0.83 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.09 2.13 7.99 -51.93 -0.42 1.72 16 30 H 0.07 1.42 7.68 -51.93 -0.40 1.02 16 31 H 0.06 1.04 5.91 -51.93 -0.31 0.73 16 32 H 0.07 1.16 5.92 -51.93 -0.31 0.85 16 33 H 0.06 1.26 7.39 -51.92 -0.38 0.88 16 34 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.09 2.42 6.01 -51.93 -0.31 2.11 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.06 0.94 6.88 -51.93 -0.36 0.58 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.92 4.39 -51.93 -0.23 0.69 16 42 H 0.07 1.51 7.93 -51.93 -0.41 1.10 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.31 7.92 -51.93 -0.41 0.89 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -28.25 319.80 -7.22 -35.47 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.41 Total: 3.96 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 0.44 Total: -21.14 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.61 Total: -23.44 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.65 Total: -15.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.25 -7.22 -35.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310527377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.666 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds