Wall clock time and date at job start Mon Mar 30 2020 07:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 110.52218 * 2 1 4 4 C 1.55257 * 110.58806 * 237.03452 * 2 1 3 5 5 C 1.53612 * 101.78156 * 277.49728 * 4 2 1 6 6 C 1.53743 * 111.02012 * 100.57191 * 5 4 2 7 7 C 1.55022 * 101.91856 * 85.65282 * 6 5 4 8 8 C 1.54184 * 104.25605 * 19.69168 * 7 6 5 9 9 C 1.52996 * 109.85608 * 121.21198 * 8 7 6 10 10 C 1.50698 * 109.85953 * 242.28951 * 8 7 6 11 11 H 1.08000 * 120.00158 * 359.97438 * 10 8 7 12 12 C 1.37878 * 119.99866 * 180.02562 * 10 8 7 13 13 N 1.31521 * 119.99983 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00075 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47027 * 89.99454 * 14 12 10 16 16 H 1.48500 * 109.46840 * 209.99867 * 14 12 10 17 17 H 1.48501 * 109.46602 * 329.99574 * 14 12 10 18 18 O 1.42895 * 111.68697 * 217.72034 * 5 4 2 19 19 C 1.52895 * 105.41522 * 339.76362 * 5 4 2 20 20 C 1.52995 * 109.98496 * 117.11425 * 19 5 4 21 21 C 1.53004 * 109.98616 * 238.42539 * 19 5 4 22 22 O 1.44095 * 106.83378 * 357.76834 * 19 5 4 23 23 H 1.08997 * 109.47099 * 288.15428 * 1 2 3 24 24 H 1.08997 * 109.47123 * 48.15186 * 1 2 3 25 25 H 1.08998 * 109.47039 * 168.14996 * 1 2 3 26 26 H 1.09005 * 109.46835 * 181.34670 * 3 2 1 27 27 H 1.09001 * 109.47204 * 301.34449 * 3 2 1 28 28 H 1.09003 * 109.47306 * 61.35268 * 3 2 1 29 29 H 1.09000 * 110.96703 * 159.37082 * 4 2 1 30 30 H 1.09000 * 110.96803 * 35.61572 * 4 2 1 31 31 H 1.08997 * 110.94053 * 327.49219 * 6 5 4 32 32 H 1.09003 * 110.93987 * 203.80402 * 6 5 4 33 33 H 1.09008 * 110.47207 * 261.00220 * 7 6 5 34 34 H 1.09000 * 110.59121 * 138.44647 * 7 6 5 35 35 H 1.09002 * 109.47413 * 60.00075 * 9 8 7 36 36 H 1.09001 * 109.47243 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.47237 * 300.00291 * 9 8 7 38 38 H 0.97003 * 119.99443 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.47099 * 67.35741 * 20 19 5 40 40 H 1.09006 * 109.46863 * 187.35166 * 20 19 5 41 41 H 1.08996 * 109.47645 * 307.35153 * 20 19 5 42 42 H 1.08996 * 109.46917 * 60.00339 * 21 19 5 43 43 H 1.08996 * 109.46895 * 179.97438 * 21 19 5 44 44 H 1.08994 * 109.47003 * 299.99859 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0664 1.4329 0.0000 4 6 2.0760 -0.7909 -1.2194 5 6 2.0026 -2.2390 -0.7124 6 6 0.7641 -2.9573 -1.2726 7 6 1.2829 -3.4705 -2.6403 8 6 2.8178 -3.4511 -2.4957 9 6 3.3787 -4.8568 -2.7198 10 6 3.4142 -2.4941 -3.4954 11 1 2.7717 -1.9494 -4.1713 12 6 4.7803 -2.3147 -3.5479 13 7 5.5628 -2.9784 -2.7251 14 14 5.5195 -1.1278 -4.7866 15 1 5.6149 0.2244 -4.1805 16 1 6.8758 -1.5949 -5.1710 17 1 4.6555 -1.0698 -5.9930 18 8 3.1191 -3.0117 -1.1578 19 6 1.9458 -2.1336 0.8119 20 6 0.6227 -2.7039 1.3265 21 6 3.1200 -2.8931 1.4327 22 8 2.0381 -0.7328 1.1370 23 1 -0.3633 0.3202 0.9765 24 1 -0.3633 0.6856 -0.7655 25 1 -0.3633 -1.0057 -0.2110 26 1 3.1560 1.4129 -0.0242 27 1 1.6931 1.9606 -0.8777 28 1 1.7324 1.9459 0.9019 29 1 3.1049 -0.5064 -1.4398 30 1 1.4386 -0.6506 -2.0924 31 1 -0.0632 -2.2604 -1.4062 32 1 0.4719 -3.7881 -0.6303 33 1 0.9671 -2.8034 -3.4425 34 1 0.9303 -4.4846 -2.8281 35 1 3.1159 -5.1975 -3.7213 36 1 4.4635 -4.8361 -2.6157 37 1 2.9562 -5.5385 -1.9816 38 1 6.5238 -2.8518 -2.7618 39 1 0.5982 -3.7795 1.1516 40 1 0.5336 -2.5074 2.3950 41 1 -0.2062 -2.2311 0.7998 42 1 4.0577 -2.4650 1.0783 43 1 3.0717 -2.8121 2.5186 44 1 3.0674 -3.9426 1.1436 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310527377.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:36 Heat of formation + Delta-G solvation = -105.220155 kcal Electronic energy + Delta-G solvation = -23647.128378 eV Core-core repulsion = 20563.976442 eV Total energy + Delta-G solvation = -3083.151936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.06488 -39.05705 -35.34701 -34.60377 -33.27447 -32.71118 -30.90451 -29.13074 -28.53600 -27.50832 -27.25476 -24.70681 -22.87417 -21.30621 -21.03477 -20.08765 -18.42209 -17.18680 -16.80546 -16.59242 -16.04959 -15.47598 -15.38133 -15.06045 -14.72976 -14.19148 -13.98453 -13.78000 -13.71787 -13.53788 -13.36106 -13.11311 -12.95815 -12.93687 -12.80071 -12.72772 -12.69764 -12.52947 -12.22970 -12.12028 -12.01249 -11.69910 -11.65362 -11.40001 -11.02576 -10.92815 -10.91238 -10.53314 -10.49092 -9.68422 -7.97694 -6.18167 1.36717 1.39514 1.46773 2.43068 2.85715 3.13052 3.47659 3.75971 3.86332 3.97168 4.07469 4.09658 4.22311 4.32157 4.38397 4.55031 4.63247 4.67981 4.68734 4.76240 4.82573 4.86329 4.89565 4.92331 4.96085 5.01164 5.08662 5.09559 5.12751 5.14265 5.25746 5.29529 5.32633 5.40387 5.44601 5.51721 5.53783 5.64376 5.77478 6.12467 6.20974 6.37748 6.76088 7.11015 7.55978 9.01557 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.019529 B = 0.008940 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.452267 B = 3131.159506 C = 3661.203150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 C -0.135 4.135 4 C -0.136 4.136 5 C 0.082 3.918 6 C -0.136 4.136 7 C -0.140 4.140 8 C 0.212 3.788 9 C -0.126 4.126 10 C -0.537 4.537 11 H 0.049 0.951 12 C 0.036 3.964 13 N -0.887 5.887 14 Si 0.932 3.068 15 H -0.283 1.283 16 H -0.286 1.286 17 H -0.266 1.266 18 O -0.359 6.359 19 C 0.107 3.893 20 C -0.158 4.158 21 C -0.119 4.119 22 O -0.381 6.381 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.065 0.935 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.974 3.009 5.825 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 C -0.192 4.192 4 C -0.174 4.174 5 C 0.041 3.959 6 C -0.173 4.173 7 C -0.178 4.178 8 C 0.174 3.826 9 C -0.184 4.184 10 C -0.575 4.575 11 H 0.067 0.933 12 C -0.165 4.165 13 N -0.525 5.525 14 Si 0.759 3.241 15 H -0.210 1.210 16 H -0.212 1.212 17 H -0.191 1.191 18 O -0.279 6.279 19 C 0.067 3.933 20 C -0.215 4.215 21 C -0.176 4.176 22 O -0.302 6.302 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.512 3.005 6.172 13.403 hybrid contribution 1.097 0.564 -1.249 1.755 sum -10.416 3.569 4.922 12.060 Atomic orbital electron populations 1.22467 0.92769 1.03550 1.03445 1.22687 0.94839 0.92790 0.84608 1.21742 1.00544 0.93572 1.03333 1.23197 1.00544 0.95859 0.97792 1.22598 0.88161 0.91828 0.93279 1.23217 0.97089 1.00672 0.96353 1.23042 0.96515 1.00754 0.97459 1.19775 0.90072 0.91788 0.80958 1.21704 1.03090 0.95640 0.97960 1.21652 0.91851 1.25693 1.18333 0.93321 1.25582 0.97993 0.96606 0.96366 1.70090 1.03616 1.41474 1.37365 0.85974 0.77985 0.79783 0.80342 1.20967 1.21233 1.19066 1.88861 1.38875 1.68490 1.31638 1.21899 0.96773 0.82195 0.92401 1.22493 0.95481 1.01528 1.02021 1.21499 0.96721 0.99724 0.99674 1.88922 1.84988 1.16993 1.39263 0.90807 0.90220 0.90907 0.94138 0.89779 0.90661 0.93888 0.90652 0.89116 0.89307 0.92256 0.91351 0.93926 0.92289 0.95227 0.93709 0.90683 0.91216 0.90119 0.95151 0.91613 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 8.05 71.98 0.58 -3.40 16 2 C 0.09 2.87 1.25 -10.02 -0.01 2.86 16 3 C -0.13 -3.88 8.99 71.98 0.65 -3.24 16 4 C -0.14 -5.38 4.17 31.57 0.13 -5.25 16 5 C 0.08 3.24 0.87 -10.37 -0.01 3.23 16 6 C -0.14 -4.47 4.30 31.54 0.14 -4.34 16 7 C -0.14 -5.42 6.16 31.69 0.20 -5.22 16 8 C 0.21 10.20 0.72 -11.14 -0.01 10.19 16 9 C -0.13 -6.08 8.45 71.98 0.61 -5.48 16 10 C -0.54 -28.64 7.23 25.60 0.19 -28.46 16 11 H 0.05 2.57 7.33 -2.91 -0.02 2.55 16 12 C 0.04 2.01 5.26 84.65 0.45 2.45 16 13 N -0.89 -51.76 10.92 21.45 0.23 -51.53 16 14 Si 0.93 43.96 29.54 68.60 2.03 45.99 16 15 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 O -0.36 -17.76 8.19 -148.98 -1.22 -18.98 16 19 C 0.11 3.75 1.15 -10.83 -0.01 3.74 16 20 C -0.16 -4.18 7.25 71.98 0.52 -3.66 16 21 C -0.12 -4.47 7.97 71.98 0.57 -3.90 16 22 O -0.38 -13.90 10.38 -148.98 -1.55 -15.45 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16 25 H 0.07 1.70 3.01 -2.39 -0.01 1.70 16 26 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 2.09 7.99 -2.39 -0.02 2.07 16 30 H 0.07 2.86 7.68 -2.39 -0.02 2.84 16 31 H 0.09 2.51 5.91 -2.39 -0.01 2.50 16 32 H 0.09 2.59 5.92 -2.39 -0.01 2.58 16 33 H 0.06 2.30 7.39 -2.38 -0.02 2.28 16 34 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 3.23 6.01 -2.39 -0.01 3.21 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.07 1.85 6.88 -2.39 -0.02 1.83 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.08 1.88 4.39 -2.39 -0.01 1.87 16 42 H 0.03 1.34 7.93 -2.39 -0.02 1.32 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.07 2.48 7.92 -2.39 -0.02 2.47 16 Total: -1.00 -63.12 319.80 4.44 -58.67 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.97 Total: 21.76 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.98 Total: -40.47 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.23 Total: -51.53 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -2.77 Total: -34.43 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.12 4.44 -58.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310527377.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.546 kcal (2) G-P(sol) polarization free energy of solvation -63.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds