Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47551 * 120.01056 * 2 1 3 5 5 C 1.39687 * 119.99528 * 274.99908 * 4 2 1 6 6 C 1.39332 * 119.95510 * 359.97438 * 5 4 2 7 7 C 1.38477 * 120.42444 * 180.02562 * 6 5 4 8 8 C 1.37679 * 120.32600 * 359.97438 * 7 6 5 9 9 C 1.40749 * 119.89470 * 0.02562 * 8 7 6 10 10 C 1.41402 * 120.20846 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00087 * 24.32789 * 10 9 8 12 12 C 1.39933 * 120.00361 * 204.32542 * 10 9 8 13 13 N 1.30832 * 119.99356 * 17.74758 * 12 10 9 14 14 Si 1.86800 * 120.00480 * 197.74450 * 12 10 9 15 15 H 1.48498 * 109.47007 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47219 * 119.99981 * 14 12 10 17 17 H 1.48497 * 109.46877 * 240.00147 * 14 12 10 18 18 C 1.38285 * 119.94944 * 179.72563 * 5 4 2 19 19 C 1.50703 * 109.47107 * 240.00934 * 2 1 3 20 20 C 1.38650 * 120.78639 * 279.72111 * 19 2 1 21 21 C 1.38210 * 119.16385 * 180.25361 * 20 19 2 22 22 N 1.31873 * 120.76017 * 0.02562 * 21 20 19 23 23 C 1.31871 * 121.72917 * 0.02562 * 22 21 20 24 24 C 1.38208 * 120.76229 * 359.97235 * 23 22 21 25 25 H 1.09000 * 109.47348 * 59.99060 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47030 * 299.99237 * 1 2 3 28 28 H 0.96996 * 120.00422 * 94.99619 * 4 2 1 29 29 H 1.08001 * 119.78382 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.83358 * 180.02562 * 7 6 5 31 31 H 1.08010 * 120.05610 * 180.02562 * 8 7 6 32 32 H 0.97010 * 119.99432 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15769 * 359.97438 * 18 5 4 34 34 H 1.07997 * 120.42495 * 0.24522 * 20 19 2 35 35 H 1.07993 * 119.62431 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.61955 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.41769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1518 0.0059 2.3994 6 6 1.8206 1.3579 2.4609 7 6 1.9497 2.0581 3.6486 8 6 2.4066 1.4252 4.7826 9 6 2.7450 0.0598 4.7358 10 6 3.2155 -0.5968 5.8965 11 1 2.9612 -0.2142 6.8739 12 6 4.0105 -1.7423 5.7787 13 7 4.6051 -2.0120 4.6450 14 14 4.2229 -2.8862 7.2401 15 1 3.4521 -2.3613 8.3957 16 1 3.7236 -4.2393 6.8863 17 1 5.6613 -2.9678 7.5999 18 6 2.6076 -0.6485 3.5291 19 6 2.0323 -0.7102 -1.2306 20 6 2.0792 -2.0950 -1.2813 21 6 2.5509 -2.7115 -2.4248 22 7 2.9535 -1.9983 -3.4585 23 6 2.9240 -0.6800 -3.4451 24 6 2.4649 0.0056 -2.3364 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.2491 -1.6319 1.1524 29 1 1.4610 1.8629 1.5766 30 1 1.6898 3.1058 3.6856 31 1 2.5052 1.9755 5.7068 32 1 5.1559 -2.8064 4.5632 33 1 2.8604 -1.6975 3.4836 34 1 1.7515 -2.6846 -0.4379 35 1 2.5903 -3.7896 -2.4726 36 1 3.2616 -0.1297 -4.3109 37 1 2.4428 1.0854 -2.3316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = 51.842906 kcal Electronic energy + Delta-G solvation = -19256.486371 eV Core-core repulsion = 16383.913778 eV Total energy + Delta-G solvation = -2872.572594 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29374 -38.01149 -35.97637 -33.59337 -32.25379 -31.23014 -29.88838 -29.42493 -27.12641 -25.20866 -24.22737 -23.45543 -21.51939 -20.80701 -19.67865 -17.31470 -17.13322 -16.26436 -15.61572 -15.47550 -14.85787 -14.70227 -14.32005 -14.06963 -13.63574 -13.38765 -13.18375 -12.75141 -12.61749 -12.22360 -11.91731 -11.66762 -11.59894 -11.25948 -11.03377 -11.03084 -10.57268 -10.41200 -9.73686 -9.56171 -9.53100 -9.45296 -9.25911 -9.18646 -8.81884 -7.33260 -6.75026 -6.22285 -4.32859 1.10191 1.21823 2.84129 3.09417 3.14947 3.20585 3.31090 3.77209 3.96757 4.17258 4.41593 4.58247 4.70548 4.80411 5.06912 5.14045 5.37053 5.48585 5.61024 5.72112 5.75902 5.82641 5.93080 6.03558 6.24747 6.30266 6.39097 6.57161 6.66565 6.86336 7.07317 7.12231 7.35396 7.40172 7.76949 7.92100 7.93126 8.07850 8.15459 8.46582 8.63078 8.81044 8.99558 9.09089 10.23977 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.004787 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.358234 B = 5847.188513 C = 6810.381764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.194 3.806 3 H 0.087 0.913 4 N -0.753 5.753 5 C 0.216 3.784 6 C -0.301 4.301 7 C -0.066 4.066 8 C -0.257 4.257 9 C 0.139 3.861 10 C -0.464 4.464 11 H 0.077 0.923 12 C 0.078 3.922 13 N -0.792 5.792 14 Si 0.903 3.097 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.275 1.275 18 C -0.230 4.230 19 C -0.034 4.034 20 C -0.164 4.164 21 C 0.099 3.901 22 N -0.492 5.492 23 C 0.097 3.903 24 C -0.166 4.166 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.389 0.611 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.277 0.723 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.484 -0.146 -11.164 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.118 3.882 6 C -0.323 4.323 7 C -0.084 4.084 8 C -0.277 4.277 9 C 0.136 3.864 10 C -0.494 4.494 11 H 0.095 0.905 12 C -0.139 4.139 13 N -0.418 5.418 14 Si 0.728 3.272 15 H -0.184 1.184 16 H -0.198 1.198 17 H -0.201 1.201 18 C -0.254 4.254 19 C -0.043 4.043 20 C -0.184 4.184 21 C -0.058 4.058 22 N -0.202 5.202 23 C -0.060 4.060 24 C -0.187 4.187 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.068 -0.590 -12.105 12.784 hybrid contribution 0.035 -0.457 1.352 1.427 sum -4.033 -1.047 -10.753 11.532 Atomic orbital electron populations 1.22274 0.95353 1.02211 1.02136 1.19558 0.93399 0.96250 0.82072 0.89553 1.44515 1.75911 1.11597 1.06710 1.17612 0.94608 0.91048 0.84895 1.19892 1.20964 0.93706 0.97773 1.20284 0.98144 0.96828 0.93189 1.20869 1.14418 0.95262 0.97162 1.17320 0.86747 0.90049 0.92266 1.19595 1.27516 1.08260 0.94035 0.90521 1.25880 0.93609 0.97599 0.96851 1.69879 1.21822 1.24019 1.26059 0.86345 0.78619 0.80104 0.82128 1.18425 1.19831 1.20096 1.20718 1.12493 1.00064 0.92130 1.20610 0.94089 0.94075 0.95530 1.21990 1.01555 0.94967 0.99855 1.22725 0.94097 1.00258 0.88722 1.67654 1.15294 1.08104 1.29104 1.22708 0.95628 0.90246 0.97436 1.22028 1.00834 1.01489 0.94317 0.92659 0.92630 0.91043 0.77627 0.89535 0.89623 0.89387 0.91230 0.86570 0.84794 0.82836 0.82861 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.40 37.15 0.35 -1.80 16 2 C 0.19 2.88 2.50 -69.08 -0.17 2.71 16 3 H 0.09 1.34 6.37 -51.93 -0.33 1.01 16 4 N -0.75 -13.78 5.21 -53.34 -0.28 -14.06 16 5 C 0.22 4.89 6.63 -83.85 -0.56 4.33 16 6 C -0.30 -6.60 8.86 -39.09 -0.35 -6.94 16 7 C -0.07 -1.48 10.01 -39.70 -0.40 -1.88 16 8 C -0.26 -6.40 9.79 -38.84 -0.38 -6.78 16 9 C 0.14 3.75 5.57 -106.86 -0.60 3.15 16 10 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 11 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 12 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 13 N -0.79 -20.57 10.96 55.55 0.61 -19.96 16 14 Si 0.90 18.77 29.60 -169.99 -5.03 13.74 16 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 18 C -0.23 -5.92 8.53 -38.68 -0.33 -6.25 16 19 C -0.03 -0.46 4.98 -104.32 -0.52 -0.98 16 20 C -0.16 -2.08 9.15 -39.44 -0.36 -2.45 16 21 C 0.10 1.21 11.18 -17.54 -0.20 1.01 16 22 N -0.49 -6.52 10.36 -13.25 -0.14 -6.65 16 23 C 0.10 1.13 11.18 -17.55 -0.20 0.93 16 24 C -0.17 -1.98 9.78 -39.44 -0.39 -2.36 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.06 7.70 -51.93 -0.40 0.66 16 28 H 0.39 6.87 6.95 -40.82 -0.28 6.58 16 29 H 0.09 1.68 6.08 -52.49 -0.32 1.36 16 30 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.09 2.09 8.06 -52.48 -0.42 1.66 16 32 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 33 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 34 H 0.13 1.59 7.00 -52.49 -0.37 1.22 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -28.97 312.24 -9.18 -38.15 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -4.53 Total: 12.29 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -4.52 Total: -28.22 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.19 Total: -40.67 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.97 -9.18 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.993 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds