Wall clock time and date at job start Mon Mar 30 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47463 * 2 1 4 4 N 1.46502 * 109.47551 * 120.01056 * 2 1 3 5 5 C 1.39687 * 119.99528 * 274.99908 * 4 2 1 6 6 C 1.39332 * 119.95510 * 359.97438 * 5 4 2 7 7 C 1.38477 * 120.42444 * 180.02562 * 6 5 4 8 8 C 1.37679 * 120.32600 * 359.97438 * 7 6 5 9 9 C 1.40749 * 119.89470 * 0.02562 * 8 7 6 10 10 C 1.41402 * 120.20846 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00087 * 24.32789 * 10 9 8 12 12 C 1.39933 * 120.00361 * 204.32542 * 10 9 8 13 13 N 1.30832 * 119.99356 * 17.74758 * 12 10 9 14 14 Si 1.86800 * 120.00480 * 197.74450 * 12 10 9 15 15 H 1.48498 * 109.47007 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47219 * 119.99981 * 14 12 10 17 17 H 1.48497 * 109.46877 * 240.00147 * 14 12 10 18 18 C 1.38285 * 119.94944 * 179.72563 * 5 4 2 19 19 C 1.50703 * 109.47107 * 240.00934 * 2 1 3 20 20 C 1.38650 * 120.78639 * 279.72111 * 19 2 1 21 21 C 1.38210 * 119.16385 * 180.25361 * 20 19 2 22 22 N 1.31873 * 120.76017 * 0.02562 * 21 20 19 23 23 C 1.31871 * 121.72917 * 0.02562 * 22 21 20 24 24 C 1.38208 * 120.76229 * 359.97235 * 23 22 21 25 25 H 1.09000 * 109.47348 * 59.99060 * 1 2 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47030 * 299.99237 * 1 2 3 28 28 H 0.96996 * 120.00422 * 94.99619 * 4 2 1 29 29 H 1.08001 * 119.78382 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.83358 * 180.02562 * 7 6 5 31 31 H 1.08010 * 120.05610 * 180.02562 * 8 7 6 32 32 H 0.97010 * 119.99432 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15769 * 359.97438 * 18 5 4 34 34 H 1.07997 * 120.42495 * 0.24522 * 20 19 2 35 35 H 1.07993 * 119.62431 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.61955 * 180.02562 * 23 22 21 37 37 H 1.07998 * 120.41769 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1518 0.0059 2.3994 6 6 1.8206 1.3579 2.4609 7 6 1.9497 2.0581 3.6486 8 6 2.4066 1.4252 4.7826 9 6 2.7450 0.0598 4.7358 10 6 3.2155 -0.5968 5.8965 11 1 2.9612 -0.2142 6.8739 12 6 4.0105 -1.7423 5.7787 13 7 4.6051 -2.0120 4.6450 14 14 4.2229 -2.8862 7.2401 15 1 3.4521 -2.3613 8.3957 16 1 3.7236 -4.2393 6.8863 17 1 5.6613 -2.9678 7.5999 18 6 2.6076 -0.6485 3.5291 19 6 2.0323 -0.7102 -1.2306 20 6 2.0792 -2.0950 -1.2813 21 6 2.5509 -2.7115 -2.4248 22 7 2.9535 -1.9983 -3.4585 23 6 2.9240 -0.6800 -3.4451 24 6 2.4649 0.0056 -2.3364 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 2.2491 -1.6319 1.1524 29 1 1.4610 1.8629 1.5766 30 1 1.6898 3.1058 3.6856 31 1 2.5052 1.9755 5.7068 32 1 5.1559 -2.8064 4.5632 33 1 2.8604 -1.6975 3.4836 34 1 1.7515 -2.6846 -0.4379 35 1 2.5903 -3.7896 -2.4726 36 1 3.2616 -0.1297 -4.3109 37 1 2.4428 1.0854 -2.3316 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313421029.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:15 Heat of formation + Delta-G solvation = 36.324048 kcal Electronic energy + Delta-G solvation = -19257.159320 eV Core-core repulsion = 16383.913778 eV Total energy + Delta-G solvation = -2873.245542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28321 -39.66672 -37.43593 -35.39071 -33.64349 -32.15891 -31.38135 -31.03066 -28.72520 -27.11057 -25.29984 -24.42677 -23.10733 -22.35945 -21.26373 -19.08217 -18.39263 -17.47804 -17.03222 -16.57366 -16.44629 -16.23800 -15.78210 -15.18873 -14.80531 -14.66298 -14.49450 -14.23785 -14.15637 -13.95301 -13.40549 -12.98929 -12.93790 -12.73843 -12.60902 -12.53285 -12.17846 -12.03458 -11.53433 -11.27440 -11.11750 -10.70171 -10.54048 -10.37198 -10.09590 -9.24371 -8.62831 -7.93327 -6.32014 0.18990 0.23175 1.07959 1.33952 1.38352 1.52709 1.57307 2.22773 2.68377 2.81955 2.90925 3.48238 3.59783 3.84924 3.87885 4.11943 4.22524 4.30995 4.39026 4.52602 4.67930 4.73014 4.78696 4.85084 4.91232 5.00363 5.02107 5.19908 5.25488 5.30704 5.35139 5.48391 5.60095 5.75361 5.95526 6.11316 6.21892 6.26392 6.58153 6.93360 6.99970 7.01789 7.06235 7.22973 8.37843 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020995 B = 0.004787 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.358234 B = 5847.188513 C = 6810.381764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.194 3.806 3 H 0.086 0.914 4 N -0.748 5.748 5 C 0.223 3.777 6 C -0.299 4.299 7 C -0.063 4.063 8 C -0.285 4.285 9 C 0.109 3.891 10 C -0.504 4.504 11 H 0.071 0.929 12 C 0.038 3.962 13 N -0.823 5.823 14 Si 0.978 3.022 15 H -0.260 1.260 16 H -0.264 1.264 17 H -0.267 1.267 18 C -0.259 4.259 19 C -0.048 4.048 20 C -0.173 4.173 21 C 0.092 3.908 22 N -0.512 5.512 23 C 0.094 3.906 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.390 0.610 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.284 0.716 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.862 0.153 -12.713 13.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.089 3.911 3 H 0.104 0.896 4 N -0.380 5.380 5 C 0.123 3.877 6 C -0.321 4.321 7 C -0.081 4.081 8 C -0.306 4.306 9 C 0.106 3.894 10 C -0.534 4.534 11 H 0.089 0.911 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.799 3.201 15 H -0.183 1.183 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.283 4.283 19 C -0.057 4.057 20 C -0.193 4.193 21 C -0.064 4.064 22 N -0.221 5.221 23 C -0.063 4.063 24 C -0.186 4.186 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.191 0.809 36 H 0.200 0.800 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.461 -0.287 -13.697 14.408 hybrid contribution 0.119 -0.478 1.657 1.728 sum -4.342 -0.765 -12.040 12.822 Atomic orbital electron populations 1.22194 0.94016 1.02437 1.02627 1.19699 0.94325 0.95902 0.81192 0.89635 1.44624 1.75119 1.11718 1.06586 1.17698 0.92940 0.91588 0.85506 1.20255 1.19808 0.93380 0.98680 1.20662 0.96542 0.98431 0.92480 1.21026 1.16201 0.94982 0.98372 1.17701 0.87516 0.91213 0.92997 1.19833 1.29377 1.10238 0.93975 0.91120 1.26687 0.92641 0.98457 0.99832 1.69934 1.22283 1.24738 1.27987 0.85235 0.78814 0.77819 0.78270 1.18317 1.18897 1.19145 1.20652 1.14833 0.99527 0.93325 1.20547 0.95311 0.94383 0.95450 1.22084 1.01940 0.95026 1.00258 1.23063 0.93609 1.01363 0.88324 1.67713 1.15820 1.09061 1.29539 1.23222 0.94791 0.89950 0.98317 1.22285 0.99935 1.02681 0.93691 0.90059 0.92620 0.92537 0.77497 0.86436 0.86302 0.89349 0.90526 0.88387 0.84639 0.80858 0.79967 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.40 71.98 0.68 -3.10 16 2 C 0.19 5.39 2.50 44.24 0.11 5.50 16 3 H 0.09 2.41 6.37 -2.39 -0.02 2.39 16 4 N -0.75 -26.88 5.21 -322.66 -1.68 -28.56 16 5 C 0.22 10.06 6.63 38.16 0.25 10.32 16 6 C -0.30 -12.64 8.86 22.59 0.20 -12.44 16 7 C -0.06 -2.76 10.01 22.19 0.22 -2.54 16 8 C -0.29 -14.52 9.79 22.75 0.22 -14.30 16 9 C 0.11 6.06 5.57 -21.31 -0.12 5.94 16 10 C -0.50 -28.21 9.05 23.46 0.21 -27.99 16 11 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 12 C 0.04 1.99 5.14 85.25 0.44 2.43 16 13 N -0.82 -44.00 10.96 21.82 0.24 -43.76 16 14 Si 0.98 39.21 29.60 68.60 2.03 41.24 16 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 16 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 17 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 18 C -0.26 -13.75 8.53 22.86 0.20 -13.55 16 19 C -0.05 -1.19 4.98 -19.67 -0.10 -1.29 16 20 C -0.17 -4.18 9.15 22.36 0.20 -3.98 16 21 C 0.09 2.12 11.18 84.68 0.95 3.07 16 22 N -0.51 -12.50 10.36 -195.84 -2.03 -14.53 16 23 C 0.09 1.93 11.18 84.68 0.95 2.87 16 24 C -0.17 -3.47 9.78 22.36 0.22 -3.25 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.56 7.70 -2.39 -0.02 1.54 16 28 H 0.39 13.80 6.95 -92.71 -0.64 13.16 16 29 H 0.12 4.20 6.08 -2.91 -0.02 4.19 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.28 13.72 8.30 -92.70 -0.77 12.95 16 33 H 0.10 5.46 6.16 -2.91 -0.02 5.44 16 34 H 0.14 3.13 7.00 -2.91 -0.02 3.11 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -63.85 312.24 3.63 -60.22 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.44 Total: 37.72 kcal Atomic # 6 Polarization: -56.96 SS G_CDS: 4.63 Total: -52.33 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.47 Total: -86.85 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -63.85 3.63 -60.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421029.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.540 kcal (2) G-P(sol) polarization free energy of solvation -63.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds