Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47419 * 2 1 4 4 N 1.46504 * 109.47164 * 239.99784 * 2 1 3 5 5 C 1.39694 * 119.99806 * 85.00388 * 4 2 1 6 6 C 1.39329 * 119.95088 * 359.97438 * 5 4 2 7 7 C 1.38478 * 120.42875 * 179.97438 * 6 5 4 8 8 C 1.37691 * 120.31972 * 0.02562 * 7 6 5 9 9 C 1.40747 * 119.89329 * 0.02562 * 8 7 6 10 10 C 1.41411 * 120.20623 * 179.72135 * 9 8 7 11 11 H 1.07994 * 120.00060 * 335.49215 * 10 9 8 12 12 C 1.39934 * 119.99862 * 155.49776 * 10 9 8 13 13 N 1.30830 * 119.99881 * 342.05428 * 12 10 9 14 14 Si 1.86797 * 119.99928 * 162.05068 * 12 10 9 15 15 H 1.48498 * 109.46980 * 59.99792 * 14 12 10 16 16 H 1.48498 * 109.47056 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47323 * 299.99776 * 14 12 10 18 18 C 1.38270 * 119.95102 * 180.02562 * 5 4 2 19 19 C 1.50699 * 109.47051 * 119.99812 * 2 1 3 20 20 C 1.38651 * 120.78839 * 79.72125 * 19 2 1 21 21 C 1.38204 * 119.16334 * 179.75125 * 20 19 2 22 22 N 1.31872 * 120.76423 * 0.53932 * 21 20 19 23 23 C 1.31870 * 121.72249 * 359.73122 * 22 21 20 24 24 C 1.38203 * 120.76540 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47172 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47414 * 300.00105 * 1 2 3 27 27 H 1.09004 * 109.47388 * 60.00502 * 1 2 3 28 28 H 0.96999 * 120.00447 * 264.99544 * 4 2 1 29 29 H 1.08002 * 119.78796 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.84632 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.05201 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 33 33 H 1.08009 * 120.16446 * 0.03605 * 18 5 4 34 34 H 1.08010 * 120.42088 * 0.02562 * 20 19 2 35 35 H 1.08001 * 119.62038 * 180.25104 * 21 20 19 36 36 H 1.08004 * 119.61872 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.41837 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1517 0.0062 -2.3995 6 6 1.8196 1.3580 -2.4610 7 6 1.9486 2.0585 -3.6485 8 6 2.4065 1.4259 -4.7826 9 6 2.7449 0.0605 -4.7359 10 6 3.2102 -0.5973 -5.8981 11 1 2.9493 -0.2172 -6.8747 12 6 4.0085 -1.7407 -5.7826 13 7 4.6133 -2.0049 -4.6530 14 14 4.2105 -2.8900 -7.2413 15 1 4.8110 -2.1464 -8.3778 16 1 5.0994 -4.0179 -6.8634 17 1 2.8822 -3.4190 -7.6424 18 6 2.6122 -0.6467 -3.5280 19 6 2.0322 -0.7104 1.2305 20 6 2.0684 -2.0953 1.2854 21 6 2.5403 -2.7119 2.4287 22 7 2.9429 -1.9989 3.4624 23 6 2.9174 -0.6806 3.4476 24 6 2.4640 0.0053 2.3367 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 1.4593 1.8627 -1.5768 30 1 1.6889 3.1061 -3.6855 31 1 2.5058 1.9765 -5.7063 32 1 5.1670 -2.7973 -4.5730 33 1 2.8687 -1.6949 -3.4818 34 1 1.7362 -2.6849 0.4436 35 1 2.5756 -3.7902 2.4778 36 1 3.2556 -0.1304 4.3132 37 1 2.4452 1.0851 2.3307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = 51.746148 kcal Electronic energy + Delta-G solvation = -19254.235825 eV Core-core repulsion = 16381.659035 eV Total energy + Delta-G solvation = -2872.576790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29456 -38.01099 -35.97540 -33.59238 -32.25452 -31.23033 -29.88681 -29.42484 -27.12598 -25.20615 -24.22845 -23.45511 -21.51942 -20.80750 -19.67792 -17.31178 -17.13103 -16.26308 -15.61663 -15.47217 -14.85844 -14.71278 -14.32179 -14.06717 -13.63608 -13.38082 -13.18554 -12.75683 -12.60376 -12.22139 -11.91937 -11.66763 -11.59844 -11.24290 -11.05153 -11.02685 -10.56493 -10.44670 -9.73943 -9.55790 -9.53197 -9.46012 -9.24741 -9.18702 -8.81696 -7.33210 -6.74700 -6.22384 -4.32819 1.10164 1.21792 2.87185 3.08317 3.11555 3.20656 3.32368 3.77191 3.96685 4.17251 4.41529 4.58268 4.70689 4.80350 5.06921 5.13974 5.37028 5.48556 5.60930 5.72080 5.75895 5.82550 5.93063 6.03442 6.24810 6.30234 6.39117 6.57170 6.66540 6.86436 7.07331 7.12298 7.35150 7.40297 7.76888 7.92047 7.93079 8.07859 8.15044 8.46527 8.63068 8.80842 8.99484 9.09122 10.24314 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.004782 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.417030 B = 5853.460983 C = 6814.280624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.194 3.806 3 H 0.087 0.913 4 N -0.753 5.753 5 C 0.216 3.784 6 C -0.301 4.301 7 C -0.065 4.065 8 C -0.257 4.257 9 C 0.140 3.860 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.792 5.792 14 Si 0.904 3.096 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.264 1.264 18 C -0.230 4.230 19 C -0.034 4.034 20 C -0.164 4.164 21 C 0.099 3.901 22 N -0.492 5.492 23 C 0.097 3.903 24 C -0.166 4.166 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.389 0.611 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.278 0.722 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -0.170 11.181 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.118 3.882 6 C -0.323 4.323 7 C -0.084 4.084 8 C -0.277 4.277 9 C 0.137 3.863 10 C -0.496 4.496 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.418 5.418 14 Si 0.729 3.271 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.254 4.254 19 C -0.043 4.043 20 C -0.184 4.184 21 C -0.058 4.058 22 N -0.202 5.202 23 C -0.060 4.060 24 C -0.187 4.187 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.224 0.776 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.068 -0.616 12.129 12.808 hybrid contribution 0.027 -0.445 -1.373 1.444 sum -4.041 -1.062 10.756 11.539 Atomic orbital electron populations 1.22277 0.95350 1.02216 1.02137 1.19557 0.93392 0.96254 0.82071 0.89557 1.44514 1.75921 1.11592 1.06708 1.17606 0.94606 0.91052 0.84898 1.19890 1.20970 0.93705 0.97776 1.20287 0.98132 0.96826 0.93191 1.20869 1.14430 0.95261 0.97175 1.17310 0.86709 0.90040 0.92242 1.19534 1.27583 1.08441 0.93994 0.90581 1.25873 0.93582 0.97582 0.96849 1.69856 1.21389 1.24281 1.26250 0.86440 0.79051 0.79647 0.81976 1.19063 1.20463 1.18891 1.20709 1.12455 1.00087 0.92163 1.20608 0.94082 0.94076 0.95525 1.21993 1.01557 0.94962 0.99866 1.22724 0.94087 1.00260 0.88731 1.67656 1.15261 1.08108 1.29131 1.22708 0.95628 0.90245 0.97436 1.22028 1.00877 1.01494 0.94273 0.92627 0.92655 0.91044 0.77634 0.89536 0.89623 0.89388 0.91106 0.86602 0.84792 0.82837 0.82861 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.40 37.15 0.35 -1.80 16 2 C 0.19 2.88 2.50 -69.09 -0.17 2.71 16 3 H 0.09 1.34 6.37 -51.93 -0.33 1.00 16 4 N -0.75 -13.77 5.21 -53.35 -0.28 -14.05 16 5 C 0.22 4.89 6.63 -83.86 -0.56 4.33 16 6 C -0.30 -6.60 8.85 -39.09 -0.35 -6.94 16 7 C -0.07 -1.48 10.02 -39.69 -0.40 -1.88 16 8 C -0.26 -6.41 9.79 -38.83 -0.38 -6.79 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.17 16 10 C -0.47 -12.49 9.05 -37.74 -0.34 -12.83 16 11 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 12 C 0.08 1.99 5.13 -17.34 -0.09 1.90 16 13 N -0.79 -20.58 10.98 55.55 0.61 -19.97 16 14 Si 0.90 18.79 29.60 -169.99 -5.03 13.75 16 15 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 16 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 18 C -0.23 -5.92 8.54 -38.68 -0.33 -6.25 16 19 C -0.03 -0.46 4.98 -104.32 -0.52 -0.98 16 20 C -0.16 -2.08 9.15 -39.44 -0.36 -2.44 16 21 C 0.10 1.21 11.18 -17.55 -0.20 1.01 16 22 N -0.49 -6.51 10.36 -13.25 -0.14 -6.65 16 23 C 0.10 1.13 11.18 -17.55 -0.20 0.93 16 24 C -0.17 -1.98 9.78 -39.44 -0.39 -2.36 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.06 7.69 -51.93 -0.40 0.66 16 28 H 0.39 6.86 6.98 -40.82 -0.28 6.58 16 29 H 0.09 1.68 6.07 -52.49 -0.32 1.36 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 32 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 33 H 0.12 3.08 6.17 -52.48 -0.32 2.75 16 34 H 0.13 1.58 7.03 -52.48 -0.37 1.22 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -28.93 312.30 -9.18 -38.11 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -4.54 Total: 12.33 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -4.52 Total: -28.23 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.19 Total: -40.67 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.93 -9.18 -38.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.857 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds