Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47419 * 2 1 4 4 N 1.46504 * 109.47164 * 239.99784 * 2 1 3 5 5 C 1.39694 * 119.99806 * 85.00388 * 4 2 1 6 6 C 1.39329 * 119.95088 * 359.97438 * 5 4 2 7 7 C 1.38478 * 120.42875 * 179.97438 * 6 5 4 8 8 C 1.37691 * 120.31972 * 0.02562 * 7 6 5 9 9 C 1.40747 * 119.89329 * 0.02562 * 8 7 6 10 10 C 1.41411 * 120.20623 * 179.72135 * 9 8 7 11 11 H 1.07994 * 120.00060 * 335.49215 * 10 9 8 12 12 C 1.39934 * 119.99862 * 155.49776 * 10 9 8 13 13 N 1.30830 * 119.99881 * 342.05428 * 12 10 9 14 14 Si 1.86797 * 119.99928 * 162.05068 * 12 10 9 15 15 H 1.48498 * 109.46980 * 59.99792 * 14 12 10 16 16 H 1.48498 * 109.47056 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47323 * 299.99776 * 14 12 10 18 18 C 1.38270 * 119.95102 * 180.02562 * 5 4 2 19 19 C 1.50699 * 109.47051 * 119.99812 * 2 1 3 20 20 C 1.38651 * 120.78839 * 79.72125 * 19 2 1 21 21 C 1.38204 * 119.16334 * 179.75125 * 20 19 2 22 22 N 1.31872 * 120.76423 * 0.53932 * 21 20 19 23 23 C 1.31870 * 121.72249 * 359.73122 * 22 21 20 24 24 C 1.38203 * 120.76540 * 359.97438 * 23 22 21 25 25 H 1.09007 * 109.47172 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47414 * 300.00105 * 1 2 3 27 27 H 1.09004 * 109.47388 * 60.00502 * 1 2 3 28 28 H 0.96999 * 120.00447 * 264.99544 * 4 2 1 29 29 H 1.08002 * 119.78796 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.84632 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.05201 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 33 33 H 1.08009 * 120.16446 * 0.03605 * 18 5 4 34 34 H 1.08010 * 120.42088 * 0.02562 * 20 19 2 35 35 H 1.08001 * 119.62038 * 180.25104 * 21 20 19 36 36 H 1.08004 * 119.61872 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.41837 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1517 0.0062 -2.3995 6 6 1.8196 1.3580 -2.4610 7 6 1.9486 2.0585 -3.6485 8 6 2.4065 1.4259 -4.7826 9 6 2.7449 0.0605 -4.7359 10 6 3.2102 -0.5973 -5.8981 11 1 2.9493 -0.2172 -6.8747 12 6 4.0085 -1.7407 -5.7826 13 7 4.6133 -2.0049 -4.6530 14 14 4.2105 -2.8900 -7.2413 15 1 4.8110 -2.1464 -8.3778 16 1 5.0994 -4.0179 -6.8634 17 1 2.8822 -3.4190 -7.6424 18 6 2.6122 -0.6467 -3.5280 19 6 2.0322 -0.7104 1.2305 20 6 2.0684 -2.0953 1.2854 21 6 2.5403 -2.7119 2.4287 22 7 2.9429 -1.9989 3.4624 23 6 2.9174 -0.6806 3.4476 24 6 2.4640 0.0053 2.3367 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 1.4593 1.8627 -1.5768 30 1 1.6889 3.1061 -3.6855 31 1 2.5058 1.9765 -5.7063 32 1 5.1670 -2.7973 -4.5730 33 1 2.8687 -1.6949 -3.4818 34 1 1.7362 -2.6849 0.4436 35 1 2.5756 -3.7902 2.4778 36 1 3.2556 -0.1304 4.3132 37 1 2.4452 1.0851 2.3307 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313421032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = 36.259457 kcal Electronic energy + Delta-G solvation = -19254.907378 eV Core-core repulsion = 16381.659035 eV Total energy + Delta-G solvation = -2873.248343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28305 -39.66613 -37.43446 -35.38929 -33.64422 -32.15795 -31.38179 -31.02838 -28.72449 -27.10749 -25.30035 -24.42530 -23.10736 -22.35926 -21.26333 -19.07808 -18.38902 -17.47447 -17.03370 -16.57148 -16.44699 -16.24575 -15.78250 -15.18512 -14.79703 -14.66604 -14.49230 -14.24096 -14.14464 -13.95264 -13.40878 -12.99208 -12.92757 -12.74909 -12.60642 -12.52255 -12.18037 -12.05334 -11.53490 -11.27973 -11.10400 -10.70103 -10.54180 -10.37092 -10.09567 -9.24344 -8.62519 -7.93411 -6.31956 0.19061 0.23222 1.09784 1.34044 1.38212 1.49078 1.59508 2.22681 2.68396 2.82276 2.90990 3.48294 3.59832 3.84900 3.87865 4.12055 4.22560 4.31035 4.38991 4.52625 4.67932 4.73053 4.78663 4.85109 4.91223 5.00422 5.02122 5.19691 5.25492 5.30712 5.35110 5.48273 5.60146 5.75407 5.95430 6.11343 6.21624 6.26413 6.58092 6.93242 7.00016 7.01781 7.06243 7.22999 8.37871 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.004782 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.417030 B = 5853.460983 C = 6814.280624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.194 3.806 3 H 0.086 0.914 4 N -0.748 5.748 5 C 0.223 3.777 6 C -0.299 4.299 7 C -0.062 4.062 8 C -0.285 4.285 9 C 0.109 3.891 10 C -0.506 4.506 11 H 0.071 0.929 12 C 0.039 3.961 13 N -0.823 5.823 14 Si 0.977 3.023 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.261 1.261 18 C -0.259 4.259 19 C -0.048 4.048 20 C -0.173 4.173 21 C 0.092 3.908 22 N -0.512 5.512 23 C 0.094 3.906 24 C -0.166 4.166 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.390 0.610 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.285 0.715 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.174 0.826 36 H 0.183 0.817 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 0.135 12.711 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.089 3.911 3 H 0.104 0.896 4 N -0.380 5.380 5 C 0.123 3.877 6 C -0.321 4.321 7 C -0.081 4.081 8 C -0.306 4.306 9 C 0.106 3.894 10 C -0.536 4.536 11 H 0.089 0.911 12 C -0.176 4.176 13 N -0.449 5.449 14 Si 0.798 3.202 15 H -0.185 1.185 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.284 4.284 19 C -0.057 4.057 20 C -0.193 4.193 21 C -0.064 4.064 22 N -0.221 5.221 23 C -0.063 4.063 24 C -0.186 4.186 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.154 0.846 35 H 0.191 0.809 36 H 0.200 0.800 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.465 -0.307 13.701 14.413 hybrid contribution 0.109 -0.466 -1.672 1.739 sum -4.355 -0.773 12.029 12.816 Atomic orbital electron populations 1.22196 0.94014 1.02444 1.02623 1.19698 0.94317 0.95904 0.81192 0.89646 1.44624 1.75127 1.11714 1.06582 1.17692 0.92932 0.91590 0.85511 1.20254 1.19817 0.93381 0.98682 1.20665 0.96532 0.98429 0.92483 1.21027 1.16213 0.94979 0.98388 1.17694 0.87483 0.91205 0.92979 1.19793 1.29413 1.10416 0.93997 0.91055 1.26681 0.92603 0.98462 0.99818 1.69917 1.21854 1.24949 1.28184 0.85334 0.79135 0.77479 0.78219 1.18493 1.19228 1.18584 1.20645 1.14799 0.99563 0.93358 1.20545 0.95314 0.94393 0.95441 1.22087 1.01929 0.95014 1.00270 1.23064 0.93598 1.01368 0.88335 1.67714 1.15786 1.09062 1.29569 1.23221 0.94793 0.89951 0.98317 1.22284 0.99982 1.02683 0.93652 0.92610 0.90062 0.92542 0.77499 0.86439 0.86304 0.89344 0.90497 0.88413 0.84620 0.80853 0.79972 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.40 71.98 0.68 -3.10 16 2 C 0.19 5.39 2.50 44.24 0.11 5.50 16 3 H 0.09 2.40 6.37 -2.39 -0.02 2.39 16 4 N -0.75 -26.86 5.21 -322.69 -1.68 -28.54 16 5 C 0.22 10.07 6.63 38.16 0.25 10.32 16 6 C -0.30 -12.65 8.85 22.59 0.20 -12.45 16 7 C -0.06 -2.76 10.02 22.20 0.22 -2.54 16 8 C -0.29 -14.54 9.79 22.75 0.22 -14.31 16 9 C 0.11 6.10 5.57 -21.31 -0.12 5.98 16 10 C -0.51 -28.31 9.05 23.46 0.21 -28.10 16 11 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 12 C 0.04 2.03 5.13 85.25 0.44 2.46 16 13 N -0.82 -44.02 10.98 21.82 0.24 -43.78 16 14 Si 0.98 39.18 29.60 68.60 2.03 41.21 16 15 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 16 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 C -0.26 -13.77 8.54 22.85 0.20 -13.57 16 19 C -0.05 -1.19 4.98 -19.67 -0.10 -1.29 16 20 C -0.17 -4.17 9.15 22.36 0.20 -3.97 16 21 C 0.09 2.12 11.18 84.68 0.95 3.07 16 22 N -0.51 -12.49 10.36 -195.84 -2.03 -14.52 16 23 C 0.09 1.93 11.18 84.68 0.95 2.87 16 24 C -0.17 -3.47 9.78 22.36 0.22 -3.25 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.56 7.69 -2.38 -0.02 1.54 16 28 H 0.39 13.79 6.98 -92.71 -0.65 13.14 16 29 H 0.12 4.20 6.07 -2.91 -0.02 4.19 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 33 H 0.10 5.44 6.17 -2.91 -0.02 5.42 16 34 H 0.14 3.13 7.03 -2.91 -0.02 3.11 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.04 16 36 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -63.77 312.30 3.63 -60.14 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.44 Total: 37.88 kcal Atomic # 6 Polarization: -57.02 SS G_CDS: 4.63 Total: -52.39 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -3.47 Total: -86.84 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -63.77 3.63 -60.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.402 kcal (2) G-P(sol) polarization free energy of solvation -63.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds