Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 N 1.46500 * 109.47545 * 120.00136 * 2 1 3 5 5 C 1.39687 * 119.99926 * 275.00367 * 4 2 1 6 6 C 1.39329 * 119.95336 * 359.97438 * 5 4 2 7 7 C 1.38479 * 120.42763 * 179.97438 * 6 5 4 8 8 C 1.37691 * 120.32083 * 0.02562 * 7 6 5 9 9 C 1.40747 * 119.89329 * 359.97438 * 8 7 6 10 10 C 1.41411 * 120.20246 * 179.72634 * 9 8 7 11 11 H 1.07992 * 120.00471 * 335.49176 * 10 9 8 12 12 C 1.39934 * 119.99698 * 155.49842 * 10 9 8 13 13 N 1.30830 * 119.99881 * 342.04794 * 12 10 9 14 14 Si 1.86797 * 119.99928 * 162.04434 * 12 10 9 15 15 H 1.48501 * 109.47190 * 89.99753 * 14 12 10 16 16 H 1.48500 * 109.47162 * 209.99791 * 14 12 10 17 17 H 1.48503 * 109.47247 * 329.99819 * 14 12 10 18 18 C 1.38281 * 119.94994 * 179.97438 * 5 4 2 19 19 C 1.50701 * 109.47212 * 240.00508 * 2 1 3 20 20 C 1.38669 * 120.42151 * 99.99960 * 19 2 1 21 21 C 1.38624 * 118.41993 * 180.02562 * 20 19 2 22 22 C 1.38233 * 119.16459 * 359.97438 * 21 20 19 23 23 N 1.31848 * 120.75765 * 0.02562 * 22 21 20 24 24 C 1.31882 * 121.73246 * 359.70594 * 23 22 21 25 25 H 1.09001 * 109.46626 * 299.99644 * 1 2 3 26 26 H 1.08999 * 109.46857 * 59.99493 * 1 2 3 27 27 H 1.09000 * 109.47093 * 179.97438 * 1 2 3 28 28 H 0.96999 * 120.00080 * 94.99438 * 4 2 1 29 29 H 1.08005 * 119.78800 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.83881 * 180.02562 * 7 6 5 31 31 H 1.08000 * 120.05201 * 180.02562 * 8 7 6 32 32 H 0.97001 * 119.99961 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.16408 * 0.03722 * 18 5 4 34 34 H 1.08001 * 120.78782 * 359.97438 * 20 19 2 35 35 H 1.07999 * 120.42084 * 180.02562 * 21 20 19 36 36 H 1.07991 * 119.61849 * 179.97438 * 22 21 20 37 37 H 1.07998 * 119.62519 * 180.30807 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1518 0.0062 2.3994 6 6 1.8206 1.3581 2.4608 7 6 1.9485 2.0583 3.6487 8 6 2.4055 1.4254 4.7829 9 6 2.7440 0.0600 4.7362 10 6 3.2194 -0.5951 5.8957 11 1 3.6946 -0.0261 6.6809 12 6 3.0741 -1.9808 6.0255 13 7 2.2132 -2.6213 5.2770 14 14 4.1096 -2.9162 7.2673 15 1 3.3949 -2.9693 8.5679 16 1 4.3453 -4.2973 6.7752 17 1 5.4121 -2.2255 7.4462 18 6 2.6124 -0.6468 3.5279 19 6 2.0324 -0.7103 -1.2305 20 6 2.4622 0.0132 -2.3326 21 6 2.9156 -0.6824 -3.4426 22 6 2.9246 -2.0644 -3.4141 23 7 2.5083 -2.7196 -2.3483 24 6 2.0754 -2.0909 -1.2728 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2491 -1.6318 1.1526 29 1 1.4617 1.8633 1.5762 30 1 1.6886 3.1059 3.6856 31 1 2.5032 1.9756 5.7071 32 1 2.1122 -3.5818 5.3673 33 1 2.8701 -1.6946 3.4814 34 1 2.4434 1.0931 -2.3266 35 1 3.2582 -0.1514 -4.3184 36 1 3.2759 -2.6138 -4.2749 37 1 1.7469 -2.6615 -0.4168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421434.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = 52.584027 kcal Electronic energy + Delta-G solvation = -19257.534706 eV Core-core repulsion = 16384.994250 eV Total energy + Delta-G solvation = -2872.540456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33533 -37.96341 -35.85895 -33.53426 -32.51942 -31.50737 -29.57266 -29.28400 -27.09799 -25.18465 -24.11300 -23.57016 -21.51388 -20.75325 -19.65479 -17.36466 -17.26308 -16.33956 -15.95001 -15.18512 -14.82914 -14.60586 -14.25711 -14.01314 -13.45463 -13.22790 -13.12746 -12.73481 -12.57456 -12.39464 -12.17376 -11.59815 -11.53677 -11.23293 -11.02630 -10.95633 -10.61786 -10.39310 -9.86939 -9.63664 -9.50121 -9.40044 -9.28207 -9.02838 -8.76885 -7.30712 -6.72507 -6.19696 -4.30375 1.04649 1.21644 2.87807 3.10931 3.15521 3.23019 3.33881 3.74565 3.98893 4.20600 4.35733 4.72009 4.76796 4.77400 4.93701 5.03353 5.38552 5.45072 5.56908 5.70541 5.85146 5.85851 5.98948 6.08847 6.23624 6.28100 6.44394 6.58687 6.64154 6.88586 7.09729 7.14584 7.37814 7.42693 7.79248 7.91527 7.95851 8.10274 8.17687 8.49093 8.65660 8.83499 9.01912 9.11567 10.26422 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021367 B = 0.004736 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.130082 B = 5910.303773 C = 6807.133250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.201 3.799 3 H 0.084 0.916 4 N -0.754 5.754 5 C 0.217 3.783 6 C -0.301 4.301 7 C -0.066 4.066 8 C -0.257 4.257 9 C 0.140 3.860 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.792 5.792 14 Si 0.903 3.097 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.230 4.230 19 C -0.129 4.129 20 C -0.070 4.070 21 C -0.172 4.172 22 C 0.088 3.912 23 N -0.483 5.483 24 C 0.107 3.893 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.389 0.611 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.278 0.722 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 1.761 -13.691 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 H 0.102 0.898 4 N -0.388 5.388 5 C 0.119 3.881 6 C -0.323 4.323 7 C -0.085 4.085 8 C -0.278 4.278 9 C 0.137 3.863 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.417 5.417 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.254 4.254 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.192 4.192 22 C -0.069 4.069 23 N -0.191 5.191 24 C -0.050 4.050 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.709 0.752 -13.832 13.871 hybrid contribution 0.417 0.090 0.509 0.664 sum -0.292 0.842 -13.324 13.353 Atomic orbital electron populations 1.22289 0.95493 1.02275 1.01993 1.19458 0.93303 0.96040 0.81867 0.89772 1.44540 1.75920 1.11530 1.06825 1.17605 0.94782 0.90908 0.84807 1.19886 1.21082 0.93525 0.97840 1.20284 0.98262 0.96778 0.93140 1.20865 1.13484 0.96513 0.96906 1.17309 0.86576 0.90537 0.91889 1.19550 1.34576 0.91908 1.03473 0.90592 1.25867 0.93670 0.98181 0.96162 1.69858 1.26628 1.10084 1.35147 0.86410 0.81317 0.78818 0.80730 1.19590 1.20208 1.18529 1.20714 1.13323 1.00549 0.90838 1.21193 0.99535 0.95538 0.96904 1.21476 0.95127 1.00630 0.92381 1.22107 1.01807 0.95890 0.99428 1.22749 0.96051 0.91805 0.96312 1.67698 1.09900 1.41258 1.00263 1.22601 0.95019 0.91574 0.95840 0.91077 0.92811 0.92582 0.77672 0.89542 0.89661 0.89419 0.91156 0.86583 0.84737 0.84867 0.82990 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.40 37.16 0.35 -1.91 16 2 C 0.20 3.00 2.49 -69.08 -0.17 2.83 16 3 H 0.08 1.28 6.36 -51.93 -0.33 0.95 16 4 N -0.75 -13.93 5.20 -53.34 -0.28 -14.21 16 5 C 0.22 4.93 6.63 -83.86 -0.56 4.37 16 6 C -0.30 -6.62 8.86 -39.09 -0.35 -6.96 16 7 C -0.07 -1.50 10.02 -39.69 -0.40 -1.89 16 8 C -0.26 -6.45 9.79 -38.83 -0.38 -6.83 16 9 C 0.14 3.79 5.57 -106.85 -0.59 3.19 16 10 C -0.47 -12.56 9.05 -37.74 -0.34 -12.90 16 11 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 12 C 0.08 2.00 5.13 -17.34 -0.09 1.91 16 13 N -0.79 -20.63 10.98 55.55 0.61 -20.02 16 14 Si 0.90 18.94 29.60 -169.99 -5.03 13.91 16 15 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.23 -5.96 8.54 -38.68 -0.33 -6.29 16 19 C -0.13 -1.73 4.97 -104.48 -0.52 -2.25 16 20 C -0.07 -0.79 9.82 -39.28 -0.39 -1.17 16 21 C -0.17 -1.73 10.11 -39.44 -0.40 -2.13 16 22 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 23 N -0.48 -6.78 10.36 -13.25 -0.14 -6.91 16 24 C 0.11 1.50 10.23 -17.55 -0.18 1.32 16 25 H 0.07 1.11 7.70 -51.93 -0.40 0.72 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 6.98 6.89 -40.82 -0.28 6.70 16 29 H 0.09 1.68 6.08 -52.48 -0.32 1.36 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 33 H 0.12 3.11 6.18 -52.49 -0.32 2.79 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 2.12 6.91 -52.49 -0.36 1.76 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -29.02 312.12 -9.19 -38.22 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.53 Total: 12.23 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -4.54 Total: -27.92 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.20 Total: -41.14 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.02 -9.19 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421434.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.800 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds