Wall clock time and date at job start Mon Mar 30 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46568 * 2 1 4 4 N 1.46499 * 109.47438 * 240.00167 * 2 1 3 5 5 C 1.39689 * 119.99683 * 84.99734 * 4 2 1 6 6 C 1.39331 * 119.95289 * 0.02562 * 5 4 2 7 7 C 1.38483 * 120.42066 * 179.72795 * 6 5 4 8 8 C 1.37678 * 120.32492 * 0.27342 * 7 6 5 9 9 C 1.40753 * 119.89819 * 359.97438 * 8 7 6 10 10 C 1.41406 * 120.20992 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99800 * 24.44858 * 10 9 8 12 12 C 1.39925 * 120.00085 * 204.44846 * 10 9 8 13 13 N 1.30834 * 119.99875 * 17.88477 * 12 10 9 14 14 Si 1.86794 * 120.00162 * 197.88634 * 12 10 9 15 15 H 1.48507 * 109.47092 * 59.99746 * 14 12 10 16 16 H 1.48502 * 109.47497 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47256 * 299.99620 * 14 12 10 18 18 C 1.38283 * 119.94912 * 180.27790 * 5 4 2 19 19 C 1.50698 * 109.47381 * 119.99566 * 2 1 3 20 20 C 1.38678 * 120.42425 * 259.72864 * 19 2 1 21 21 C 1.38618 * 118.42102 * 179.78178 * 20 19 2 22 22 C 1.38230 * 119.16252 * 0.51157 * 21 20 19 23 23 N 1.31856 * 120.76399 * 359.72650 * 22 21 20 24 24 C 1.31885 * 121.72066 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47317 * 299.99642 * 1 2 3 26 26 H 1.08998 * 109.47404 * 60.00331 * 1 2 3 27 27 H 1.09005 * 109.46568 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99919 * 264.99324 * 4 2 1 29 29 H 1.08002 * 119.78894 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.83281 * 180.29977 * 7 6 5 31 31 H 1.08009 * 120.05425 * 179.97438 * 8 7 6 32 32 H 0.97004 * 119.99636 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15975 * 359.97438 * 18 5 4 34 34 H 1.07998 * 120.78267 * 0.02562 * 20 19 2 35 35 H 1.08001 * 120.42066 * 180.21862 * 21 20 19 36 36 H 1.08002 * 119.61845 * 179.74801 * 22 21 20 37 37 H 1.08003 * 119.61420 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1518 0.0064 -2.3994 6 6 1.8205 1.3584 -2.4606 7 6 1.9543 2.0600 -3.6470 8 6 2.4112 1.4272 -4.7812 9 6 2.7449 0.0606 -4.7359 10 6 3.2143 -0.5961 -5.8970 11 1 3.6884 -0.0284 -6.6840 12 6 3.0645 -1.9813 -6.0262 13 7 2.2052 -2.6194 -5.2738 14 14 4.0915 -2.9194 -7.2729 15 1 5.5326 -2.7419 -6.9612 16 1 3.7467 -4.3626 -7.2127 17 1 3.8122 -2.3998 -8.6357 18 6 2.6074 -0.6478 -3.5293 19 6 2.0324 -0.7103 1.2305 20 6 2.4675 0.0133 2.3306 21 6 2.9169 -0.6824 3.4421 22 6 2.9264 -2.0644 3.4133 23 7 2.5097 -2.7196 2.3476 24 6 2.0710 -2.0908 1.2745 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2492 -1.6316 -1.1526 29 1 1.4616 1.8635 -1.5760 30 1 1.6994 3.1090 -3.6825 31 1 2.5135 1.9787 -5.7043 32 1 2.1017 -3.5797 -5.3631 33 1 2.8610 -1.6966 -3.4838 34 1 2.4528 1.0931 2.3229 35 1 3.2598 -0.1514 4.3178 36 1 3.2789 -2.6138 4.2737 37 1 1.7373 -2.6616 0.4206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:06 Heat of formation + Delta-G solvation = 52.562121 kcal Electronic energy + Delta-G solvation = -19258.289212 eV Core-core repulsion = 16385.747805 eV Total energy + Delta-G solvation = -2872.541406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33445 -37.96223 -35.85851 -33.53483 -32.51829 -31.50789 -29.56944 -29.28232 -27.09627 -25.18531 -24.11254 -23.56968 -21.51243 -20.75176 -19.65368 -17.36241 -17.26182 -16.33892 -15.95110 -15.18580 -14.82745 -14.60755 -14.25871 -14.00931 -13.45349 -13.22710 -13.12669 -12.73623 -12.56546 -12.39354 -12.17415 -11.59469 -11.53193 -11.22708 -11.03176 -10.97152 -10.60983 -10.39433 -9.86854 -9.63050 -9.50234 -9.40046 -9.28306 -9.02780 -8.77033 -7.30780 -6.72221 -6.19554 -4.30457 1.04691 1.21668 2.89371 3.10388 3.13505 3.23162 3.34728 3.74600 3.98801 4.20825 4.35802 4.72048 4.76813 4.77426 4.93768 5.03379 5.38589 5.45089 5.57036 5.70619 5.85288 5.85938 5.98997 6.08863 6.23724 6.28177 6.44584 6.58827 6.64216 6.88615 7.09860 7.14643 7.38110 7.42850 7.79336 7.91502 7.95932 8.10390 8.17686 8.49090 8.65848 8.83550 9.01936 9.11676 10.26528 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.004736 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.256916 B = 5911.030406 C = 6806.360394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.201 3.799 3 H 0.084 0.916 4 N -0.754 5.754 5 C 0.217 3.783 6 C -0.301 4.301 7 C -0.066 4.066 8 C -0.257 4.257 9 C 0.140 3.860 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.792 5.792 14 Si 0.904 3.096 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.230 4.230 19 C -0.129 4.129 20 C -0.070 4.070 21 C -0.173 4.173 22 C 0.088 3.912 23 N -0.483 5.483 24 C 0.107 3.893 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.389 0.611 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.278 0.722 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.554 1.744 13.688 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 H 0.102 0.898 4 N -0.388 5.388 5 C 0.119 3.881 6 C -0.323 4.323 7 C -0.085 4.085 8 C -0.278 4.278 9 C 0.137 3.863 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.417 5.417 14 Si 0.729 3.271 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.191 1.191 18 C -0.254 4.254 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.192 4.192 22 C -0.069 4.069 23 N -0.191 5.191 24 C -0.050 4.050 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.708 0.733 13.825 13.863 hybrid contribution 0.430 0.102 -0.511 0.676 sum -0.279 0.835 13.314 13.343 Atomic orbital electron populations 1.22290 0.95495 1.02278 1.01993 1.19457 0.93304 0.96039 0.81867 0.89778 1.44539 1.75919 1.11534 1.06819 1.17609 0.94806 0.90903 0.84804 1.19886 1.21058 0.93517 0.97875 1.20280 0.98277 0.96761 0.93155 1.20862 1.13511 0.96470 0.96922 1.17308 0.86603 0.90545 0.91889 1.19530 1.34742 0.91954 1.03305 0.90619 1.25865 0.93630 0.98179 0.96216 1.69855 1.26493 1.10208 1.35150 0.86445 0.81259 0.78228 0.81203 1.18924 1.20446 1.19081 1.20722 1.13372 1.00498 0.90816 1.21191 0.99523 0.95536 0.96918 1.21478 0.95119 1.00632 0.92378 1.22105 1.01835 0.95887 0.99407 1.22752 0.96065 0.91807 0.96295 1.67707 1.09866 1.41244 1.00296 1.22601 0.95006 0.91577 0.95854 0.92807 0.91081 0.92581 0.77675 0.89544 0.89665 0.89426 0.91100 0.86536 0.84739 0.84867 0.82990 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.40 37.16 0.35 -1.91 16 2 C 0.20 3.00 2.49 -69.08 -0.17 2.83 16 3 H 0.08 1.28 6.36 -51.93 -0.33 0.95 16 4 N -0.75 -13.94 5.20 -53.34 -0.28 -14.21 16 5 C 0.22 4.93 6.63 -83.86 -0.56 4.37 16 6 C -0.30 -6.62 8.86 -39.08 -0.35 -6.97 16 7 C -0.07 -1.50 10.01 -39.70 -0.40 -1.90 16 8 C -0.26 -6.45 9.79 -38.84 -0.38 -6.83 16 9 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 10 C -0.47 -12.57 9.05 -37.75 -0.34 -12.91 16 11 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 12 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 13 N -0.79 -20.62 10.95 55.55 0.61 -20.01 16 14 Si 0.90 18.96 29.59 -169.99 -5.03 13.93 16 15 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 18 C -0.23 -5.96 8.53 -38.68 -0.33 -6.29 16 19 C -0.13 -1.73 4.97 -104.48 -0.52 -2.25 16 20 C -0.07 -0.79 9.82 -39.28 -0.39 -1.17 16 21 C -0.17 -1.73 10.11 -39.44 -0.40 -2.13 16 22 C 0.09 0.99 11.18 -17.54 -0.20 0.79 16 23 N -0.48 -6.77 10.36 -13.25 -0.14 -6.91 16 24 C 0.11 1.50 10.23 -17.55 -0.18 1.32 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.11 7.70 -51.93 -0.40 0.72 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 6.98 6.90 -40.82 -0.28 6.70 16 29 H 0.09 1.68 6.08 -52.49 -0.32 1.37 16 30 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 31 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 32 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 2.12 6.93 -52.48 -0.36 1.75 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -28.99 312.11 -9.20 -38.19 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.53 Total: 12.26 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: -4.54 Total: -27.95 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.19 Total: -41.14 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.99 -9.20 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.750 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds