Wall clock time and date at job start Mon Mar 30 2020 06:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46568 * 2 1 4 4 N 1.46499 * 109.47438 * 240.00167 * 2 1 3 5 5 C 1.39689 * 119.99683 * 84.99734 * 4 2 1 6 6 C 1.39331 * 119.95289 * 0.02562 * 5 4 2 7 7 C 1.38483 * 120.42066 * 179.72795 * 6 5 4 8 8 C 1.37678 * 120.32492 * 0.27342 * 7 6 5 9 9 C 1.40753 * 119.89819 * 359.97438 * 8 7 6 10 10 C 1.41406 * 120.20992 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99800 * 24.44858 * 10 9 8 12 12 C 1.39925 * 120.00085 * 204.44846 * 10 9 8 13 13 N 1.30834 * 119.99875 * 17.88477 * 12 10 9 14 14 Si 1.86794 * 120.00162 * 197.88634 * 12 10 9 15 15 H 1.48507 * 109.47092 * 59.99746 * 14 12 10 16 16 H 1.48502 * 109.47497 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47256 * 299.99620 * 14 12 10 18 18 C 1.38283 * 119.94912 * 180.27790 * 5 4 2 19 19 C 1.50698 * 109.47381 * 119.99566 * 2 1 3 20 20 C 1.38678 * 120.42425 * 259.72864 * 19 2 1 21 21 C 1.38618 * 118.42102 * 179.78178 * 20 19 2 22 22 C 1.38230 * 119.16252 * 0.51157 * 21 20 19 23 23 N 1.31856 * 120.76399 * 359.72650 * 22 21 20 24 24 C 1.31885 * 121.72066 * 0.02562 * 23 22 21 25 25 H 1.09004 * 109.47317 * 299.99642 * 1 2 3 26 26 H 1.08998 * 109.47404 * 60.00331 * 1 2 3 27 27 H 1.09005 * 109.46568 * 179.97438 * 1 2 3 28 28 H 0.96995 * 119.99919 * 264.99324 * 4 2 1 29 29 H 1.08002 * 119.78894 * 0.02562 * 6 5 4 30 30 H 1.08004 * 119.83281 * 180.29977 * 7 6 5 31 31 H 1.08009 * 120.05425 * 179.97438 * 8 7 6 32 32 H 0.97004 * 119.99636 * 180.02562 * 13 12 10 33 33 H 1.08000 * 120.15975 * 359.97438 * 18 5 4 34 34 H 1.07998 * 120.78267 * 0.02562 * 20 19 2 35 35 H 1.08001 * 120.42066 * 180.21862 * 21 20 19 36 36 H 1.08002 * 119.61845 * 179.74801 * 22 21 20 37 37 H 1.08003 * 119.61420 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1518 0.0064 -2.3994 6 6 1.8205 1.3584 -2.4606 7 6 1.9543 2.0600 -3.6470 8 6 2.4112 1.4272 -4.7812 9 6 2.7449 0.0606 -4.7359 10 6 3.2143 -0.5961 -5.8970 11 1 3.6884 -0.0284 -6.6840 12 6 3.0645 -1.9813 -6.0262 13 7 2.2052 -2.6194 -5.2738 14 14 4.0915 -2.9194 -7.2729 15 1 5.5326 -2.7419 -6.9612 16 1 3.7467 -4.3626 -7.2127 17 1 3.8122 -2.3998 -8.6357 18 6 2.6074 -0.6478 -3.5293 19 6 2.0324 -0.7103 1.2305 20 6 2.4675 0.0133 2.3306 21 6 2.9169 -0.6824 3.4421 22 6 2.9264 -2.0644 3.4133 23 7 2.5097 -2.7196 2.3476 24 6 2.0710 -2.0908 1.2745 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2492 -1.6316 -1.1526 29 1 1.4616 1.8635 -1.5760 30 1 1.6994 3.1090 -3.6825 31 1 2.5135 1.9787 -5.7043 32 1 2.1017 -3.5797 -5.3631 33 1 2.8610 -1.6966 -3.4838 34 1 2.4528 1.0931 2.3229 35 1 3.2598 -0.1514 4.3178 36 1 3.2789 -2.6138 4.2737 37 1 1.7373 -2.6616 0.4206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313421437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:05 Heat of formation + Delta-G solvation = 36.684862 kcal Electronic energy + Delta-G solvation = -19258.977701 eV Core-core repulsion = 16385.747805 eV Total energy + Delta-G solvation = -2873.229896 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31367 -39.64060 -37.33989 -35.35114 -33.67951 -32.69276 -31.35854 -30.53049 -28.72070 -27.09943 -25.16536 -24.54099 -23.09971 -22.32628 -21.25201 -19.07299 -18.39244 -17.66522 -17.18524 -16.70364 -16.49598 -16.05910 -15.45651 -15.18899 -14.77982 -14.71460 -14.30855 -14.13258 -13.97073 -13.93194 -13.52190 -13.25913 -12.92984 -12.79939 -12.59701 -12.46140 -12.20311 -12.04539 -11.50543 -11.28844 -11.10462 -10.78641 -10.52579 -10.39919 -9.95648 -9.23394 -8.61730 -7.92208 -6.31293 0.12544 0.32118 1.10414 1.35087 1.37911 1.48936 1.59716 2.22676 2.69454 2.81849 2.91515 3.42195 3.73115 3.87685 3.94354 4.03070 4.12345 4.36864 4.41920 4.53784 4.61177 4.74516 4.78636 4.85800 4.93915 5.02026 5.16637 5.20161 5.22435 5.31809 5.35449 5.49015 5.59841 5.75454 5.96330 6.12450 6.22608 6.27637 6.58882 6.93403 6.99244 7.03361 7.07163 7.23726 8.38370 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.004736 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.256916 B = 5911.030406 C = 6806.360394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.202 3.798 3 H 0.089 0.911 4 N -0.750 5.750 5 C 0.223 3.777 6 C -0.298 4.298 7 C -0.062 4.062 8 C -0.285 4.285 9 C 0.109 3.891 10 C -0.506 4.506 11 H 0.071 0.929 12 C 0.038 3.962 13 N -0.822 5.822 14 Si 0.977 3.023 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.259 1.259 18 C -0.261 4.261 19 C -0.140 4.140 20 C -0.071 4.071 21 C -0.160 4.160 22 C 0.081 3.919 23 N -0.512 5.512 24 C 0.087 3.913 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.388 0.612 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.088 0.912 32 H 0.284 0.716 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 2.714 16.022 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.096 3.904 3 H 0.107 0.893 4 N -0.382 5.382 5 C 0.123 3.877 6 C -0.320 4.320 7 C -0.081 4.081 8 C -0.306 4.306 9 C 0.106 3.894 10 C -0.536 4.536 11 H 0.090 0.910 12 C -0.176 4.176 13 N -0.448 5.448 14 Si 0.798 3.202 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.184 1.184 18 C -0.285 4.285 19 C -0.143 4.143 20 C -0.097 4.097 21 C -0.180 4.180 22 C -0.076 4.076 23 N -0.221 5.221 24 C -0.069 4.069 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.223 0.777 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.478 1.708 16.195 16.291 hybrid contribution 0.315 -0.141 -1.012 1.069 sum -0.164 1.567 15.183 15.264 Atomic orbital electron populations 1.22217 0.94663 1.02080 1.02464 1.19606 0.93858 0.95941 0.81014 0.89309 1.44682 1.75086 1.11606 1.06805 1.17709 0.93124 0.91496 0.85387 1.20253 1.19829 0.93111 0.98841 1.20666 0.96582 0.98416 0.92423 1.21021 1.15235 0.96149 0.98194 1.17690 0.87380 0.91813 0.92513 1.19792 1.36616 0.93355 1.03861 0.91050 1.26680 0.94261 0.98480 0.98216 1.69920 1.27524 1.10723 1.36642 0.85341 0.79192 0.77074 0.78602 1.18724 1.19245 1.18355 1.20654 1.15901 0.99881 0.92066 1.21014 1.01024 0.95190 0.97062 1.21835 0.94072 1.01963 0.91819 1.22511 0.99968 0.95403 1.00075 1.23360 0.95052 0.93002 0.96185 1.67688 1.10981 1.42305 1.01114 1.22496 0.96294 0.92075 0.96057 0.89917 0.92861 0.93203 0.77743 0.86325 0.86232 0.89325 0.90517 0.88540 0.82219 0.81004 0.80150 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 9.40 71.98 0.68 -3.42 16 2 C 0.20 5.72 2.49 44.24 0.11 5.83 16 3 H 0.09 2.45 6.36 -2.38 -0.02 2.43 16 4 N -0.75 -27.79 5.20 -322.67 -1.68 -29.46 16 5 C 0.22 10.24 6.63 38.16 0.25 10.49 16 6 C -0.30 -12.71 8.86 22.59 0.20 -12.51 16 7 C -0.06 -2.77 10.01 22.20 0.22 -2.55 16 8 C -0.29 -14.64 9.79 22.75 0.22 -14.42 16 9 C 0.11 6.15 5.57 -21.31 -0.12 6.03 16 10 C -0.51 -28.63 9.05 23.46 0.21 -28.42 16 11 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 12 C 0.04 2.02 5.14 85.25 0.44 2.45 16 13 N -0.82 -44.55 10.95 21.82 0.24 -44.31 16 14 Si 0.98 39.83 29.59 68.60 2.03 41.86 16 15 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 16 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 C -0.26 -14.08 8.53 22.86 0.20 -13.88 16 19 C -0.14 -3.53 4.97 -19.77 -0.10 -3.63 16 20 C -0.07 -1.35 9.82 22.47 0.22 -1.13 16 21 C -0.16 -2.57 10.11 22.36 0.23 -2.34 16 22 C 0.08 1.60 11.18 84.69 0.95 2.55 16 23 N -0.51 -13.87 10.36 -195.84 -2.03 -15.90 16 24 C 0.09 2.43 10.23 84.67 0.87 3.30 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.05 1.59 7.70 -2.39 -0.02 1.57 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.39 14.46 6.90 -92.71 -0.64 13.82 16 29 H 0.12 4.25 6.08 -2.91 -0.02 4.24 16 30 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 31 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.28 14.02 8.30 -92.70 -0.77 13.25 16 33 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 34 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 36 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.14 4.09 6.93 -2.91 -0.02 4.07 16 Total: -1.00 -65.56 312.11 3.58 -61.98 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.44 Total: 37.48 kcal Atomic # 6 Polarization: -56.22 SS G_CDS: 4.57 Total: -51.64 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -3.47 Total: -89.67 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -65.56 3.58 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.664 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds