Wall clock time and date at job start Mon Mar 30 2020 07:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99700 * 2 1 4 4 C 1.53005 * 109.47108 * 293.80542 * 3 2 1 5 5 H 1.09002 * 110.34955 * 188.32520 * 4 3 2 6 6 C 1.54938 * 110.30961 * 310.47114 * 4 3 2 7 7 C 1.55312 * 100.94086 * 155.35767 * 6 4 3 8 8 C 1.54373 * 102.25158 * 325.86698 * 7 6 4 9 9 C 1.52997 * 109.83188 * 261.83786 * 8 7 6 10 10 C 1.50703 * 109.82914 * 140.86940 * 8 7 6 11 11 H 1.08000 * 120.00329 * 0.40761 * 10 8 7 12 12 C 1.37885 * 119.99826 * 180.41323 * 10 8 7 13 13 N 1.31512 * 119.99822 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 119.99846 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47448 * 59.99699 * 14 12 10 16 16 H 1.48502 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48511 * 109.47056 * 299.99566 * 14 12 10 18 18 O 1.43240 * 107.58972 * 21.35734 * 8 7 6 19 19 C 1.52996 * 109.46926 * 53.81017 * 3 2 1 20 20 C 1.52997 * 109.47506 * 59.99609 * 19 3 2 21 21 C 1.53005 * 109.46848 * 60.00016 * 20 19 3 22 22 C 1.52998 * 109.46993 * 299.99878 * 21 20 19 23 23 C 1.52999 * 109.46630 * 173.80983 * 3 2 1 24 24 H 1.09002 * 109.47178 * 185.89679 * 1 2 3 25 25 H 1.09011 * 109.46906 * 305.89381 * 1 2 3 26 26 H 1.08991 * 109.47483 * 65.89574 * 1 2 3 27 27 H 1.09002 * 111.13260 * 37.44189 * 6 4 3 28 28 H 1.09004 * 111.16213 * 273.29335 * 6 4 3 29 29 H 1.08993 * 110.84805 * 207.67419 * 7 6 4 30 30 H 1.09006 * 111.01907 * 84.13761 * 7 6 4 31 31 H 1.09001 * 109.47532 * 171.24149 * 9 8 7 32 32 H 1.08995 * 109.47385 * 291.24869 * 9 8 7 33 33 H 1.09006 * 109.47037 * 51.24377 * 9 8 7 34 34 H 0.97004 * 119.99893 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46808 * 179.97438 * 19 3 2 36 36 H 1.09006 * 109.47273 * 299.99334 * 19 3 2 37 37 H 1.09001 * 109.47347 * 299.99989 * 20 19 3 38 38 H 1.08996 * 109.47478 * 179.97438 * 20 19 3 39 39 H 1.08997 * 109.47277 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47169 * 59.99863 * 21 20 19 41 41 H 1.09001 * 109.47151 * 299.99996 * 22 21 20 42 42 H 1.09007 * 109.47076 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47742 * 59.99964 * 23 3 2 44 44 H 1.09004 * 109.47009 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6857 2.0083 -1.3198 5 1 2.2410 2.9430 -1.3981 6 6 2.0180 1.0832 -2.5175 7 6 1.0679 1.6557 -3.6046 8 6 -0.1589 2.0876 -2.7730 9 6 -1.2390 1.0062 -2.8411 10 6 -0.7027 3.3896 -3.3025 11 1 -0.2332 3.8660 -4.1504 12 6 -1.7997 3.9726 -2.7042 13 7 -2.3717 3.3923 -1.6719 14 14 -2.4742 5.5860 -3.3609 15 1 -2.8885 5.4100 -4.7760 16 1 -3.6476 5.9988 -2.5497 17 1 -1.4229 6.6319 -3.2793 18 8 0.2744 2.2571 -1.4183 19 6 1.4395 2.1178 1.1642 20 6 1.7639 1.4151 2.4839 21 6 3.2815 1.2977 2.6395 22 6 3.8522 0.4854 1.4754 23 6 3.5277 1.1881 0.1555 24 1 -0.3633 -1.0222 0.1056 25 1 -0.3633 0.6026 0.8326 26 1 -0.3634 0.4197 -0.9380 27 1 1.7755 0.0449 -2.2912 28 1 3.0617 1.1844 -2.8151 29 1 0.7957 0.8857 -4.3264 30 1 1.5183 2.5127 -4.1055 31 1 -2.0337 1.2411 -2.1331 32 1 -1.6507 0.9668 -3.8496 33 1 -0.8020 0.0398 -2.5892 34 1 -3.1432 3.8027 -1.2508 35 1 1.8831 3.1134 1.1644 36 1 0.3583 2.2015 1.0533 37 1 1.3206 0.4193 2.4839 38 1 1.3577 1.9939 3.3133 39 1 3.5127 0.7967 3.5795 40 1 3.7248 2.2935 2.6395 41 1 3.4089 -0.5104 1.4754 42 1 4.9335 0.4022 1.5860 43 1 3.9344 0.6094 -0.6738 44 1 3.9710 2.1839 0.1560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320059345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:11 Heat of formation + Delta-G solvation = -104.431012 kcal Electronic energy + Delta-G solvation = -23274.929399 eV Core-core repulsion = 20191.811683 eV Total energy + Delta-G solvation = -3083.117716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96202 -37.58405 -35.23181 -32.95874 -31.30750 -30.92289 -30.21759 -28.52737 -26.07952 -25.09939 -24.43146 -22.48263 -21.54687 -19.97570 -19.27346 -19.16872 -16.43530 -16.06830 -15.35383 -15.05715 -14.91815 -14.47767 -14.19136 -13.62325 -13.27517 -13.07470 -12.63312 -12.32925 -12.13149 -12.03432 -11.92703 -11.77038 -11.50543 -11.29419 -10.92369 -10.85677 -10.77673 -10.71683 -10.69519 -10.49242 -10.32391 -10.15859 -9.96171 -9.77912 -9.59649 -9.34343 -9.05304 -8.74871 -8.45113 -7.58030 -5.94185 -4.08824 3.31625 3.36572 3.39171 4.39630 4.43445 4.79493 5.05183 5.12172 5.17401 5.39776 5.43572 5.55659 5.65622 5.72759 5.82277 5.87592 5.91338 5.92711 6.01867 6.15034 6.23186 6.24302 6.30141 6.33187 6.36843 6.46120 6.47365 6.50500 6.55544 6.61476 6.71028 6.74763 6.88300 6.90950 6.93840 6.99662 7.23171 7.42625 7.80577 7.93604 8.05651 8.38522 8.64968 9.06047 9.61864 11.08117 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.006690 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.533649 B = 4184.462660 C = 4482.096880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.380 6.380 3 C 0.129 3.871 4 C 0.057 3.943 5 H 0.053 0.947 6 C -0.148 4.148 7 C -0.142 4.142 8 C 0.229 3.771 9 C -0.139 4.139 10 C -0.535 4.535 11 H 0.056 0.944 12 C 0.083 3.917 13 N -0.861 5.861 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.278 1.278 18 O -0.343 6.343 19 C -0.140 4.140 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.102 4.102 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -5.285 5.263 11.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.299 6.299 3 C 0.089 3.911 4 C -0.003 4.003 5 H 0.071 0.929 6 C -0.186 4.186 7 C -0.180 4.180 8 C 0.192 3.808 9 C -0.196 4.196 10 C -0.572 4.572 11 H 0.074 0.926 12 C -0.122 4.122 13 N -0.497 5.497 14 Si 0.713 3.287 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 O -0.263 6.263 19 C -0.178 4.178 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.150 4.150 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.723 -5.385 5.565 11.664 hybrid contribution -0.454 1.210 -0.544 1.402 sum 8.270 -4.176 5.021 10.537 Atomic orbital electron populations 1.23370 0.80706 1.00192 1.04797 1.87736 1.20475 1.26687 1.95041 1.21449 0.92381 0.83619 0.93665 1.23262 0.87806 0.95677 0.93513 0.92912 1.23169 0.98783 1.00430 0.96186 1.23204 0.97506 0.99438 0.97842 1.19591 0.88946 0.93813 0.78486 1.22066 1.01330 0.94991 1.01212 1.21245 1.13349 1.07407 1.15232 0.92613 1.24957 0.96089 0.96843 0.94310 1.69946 1.21027 1.38205 1.20568 0.86789 0.78455 0.84494 0.78913 1.20314 1.21285 1.20333 1.88726 1.17048 1.90198 1.30316 1.22012 1.03350 0.98630 0.93785 1.21479 0.95551 1.01018 0.97241 1.21526 0.96275 0.99851 0.97792 1.21434 0.99393 0.99958 0.94247 1.21472 0.93616 1.00909 0.98001 0.92344 0.94138 0.88533 0.90542 0.92374 0.92404 0.92037 0.89532 0.94325 0.96552 0.93138 0.91817 0.89583 0.91738 0.92726 0.92692 0.92491 0.91223 0.92712 0.91458 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.09 9.61 101.05 0.97 1.06 16 2 O -0.38 -6.92 7.75 -37.08 -0.29 -7.21 16 3 C 0.13 2.23 0.38 -90.62 -0.03 2.19 16 4 C 0.06 1.13 2.63 -25.71 -0.07 1.06 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.15 -2.76 5.83 -24.48 -0.14 -2.90 16 7 C -0.14 -2.97 6.07 -24.79 -0.15 -3.12 16 8 C 0.23 5.56 0.76 -91.05 -0.07 5.49 16 9 C -0.14 -3.27 6.95 37.16 0.26 -3.01 16 10 C -0.53 -14.50 8.22 -34.44 -0.28 -14.78 16 11 H 0.06 1.51 7.52 -52.49 -0.39 1.11 16 12 C 0.08 2.27 5.26 -17.82 -0.09 2.17 16 13 N -0.86 -24.03 11.03 55.43 0.61 -23.42 16 14 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 O -0.34 -8.23 6.67 -37.08 -0.25 -8.47 16 19 C -0.14 -2.42 4.00 -26.73 -0.11 -2.53 16 20 C -0.12 -1.67 5.69 -26.73 -0.15 -1.82 16 21 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 22 C -0.11 -1.44 5.78 -26.73 -0.15 -1.60 16 23 C -0.10 -1.48 4.82 -26.73 -0.13 -1.60 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.77 5.82 -51.92 -0.30 0.47 16 26 H 0.10 2.05 2.38 -51.93 -0.12 1.93 16 27 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 28 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 29 H 0.06 1.13 7.82 -51.93 -0.41 0.73 16 30 H 0.06 1.29 7.65 -51.93 -0.40 0.89 16 31 H 0.09 2.24 6.32 -51.93 -0.33 1.91 16 32 H 0.04 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.02 0.34 6.88 -51.93 -0.36 -0.02 16 34 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.74 5.78 -51.93 -0.30 1.44 16 37 H 0.06 0.98 7.38 -51.93 -0.38 0.59 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.95 7.60 -51.93 -0.39 0.55 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 317.77 15.07 4.79 4.79 Total: -1.00 -27.80 317.77 -7.98 -35.77 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -7.51 Total: 3.45 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.31 Total: -20.99 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.61 Total: -23.42 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.53 Total: -15.68 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.80 -7.98 -35.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.656 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds