Wall clock time and date at job start Mon Mar 30 2020 07:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42906 * 113.99700 * 2 1 4 4 C 1.53005 * 109.47108 * 293.80542 * 3 2 1 5 5 H 1.09002 * 110.34955 * 188.32520 * 4 3 2 6 6 C 1.54938 * 110.30961 * 310.47114 * 4 3 2 7 7 C 1.55312 * 100.94086 * 155.35767 * 6 4 3 8 8 C 1.54373 * 102.25158 * 325.86698 * 7 6 4 9 9 C 1.52997 * 109.83188 * 261.83786 * 8 7 6 10 10 C 1.50703 * 109.82914 * 140.86940 * 8 7 6 11 11 H 1.08000 * 120.00329 * 0.40761 * 10 8 7 12 12 C 1.37885 * 119.99826 * 180.41323 * 10 8 7 13 13 N 1.31512 * 119.99822 * 359.97438 * 12 10 8 14 14 Si 1.86796 * 119.99846 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47448 * 59.99699 * 14 12 10 16 16 H 1.48502 * 109.47145 * 179.97438 * 14 12 10 17 17 H 1.48511 * 109.47056 * 299.99566 * 14 12 10 18 18 O 1.43240 * 107.58972 * 21.35734 * 8 7 6 19 19 C 1.52996 * 109.46926 * 53.81017 * 3 2 1 20 20 C 1.52997 * 109.47506 * 59.99609 * 19 3 2 21 21 C 1.53005 * 109.46848 * 60.00016 * 20 19 3 22 22 C 1.52998 * 109.46993 * 299.99878 * 21 20 19 23 23 C 1.52999 * 109.46630 * 173.80983 * 3 2 1 24 24 H 1.09002 * 109.47178 * 185.89679 * 1 2 3 25 25 H 1.09011 * 109.46906 * 305.89381 * 1 2 3 26 26 H 1.08991 * 109.47483 * 65.89574 * 1 2 3 27 27 H 1.09002 * 111.13260 * 37.44189 * 6 4 3 28 28 H 1.09004 * 111.16213 * 273.29335 * 6 4 3 29 29 H 1.08993 * 110.84805 * 207.67419 * 7 6 4 30 30 H 1.09006 * 111.01907 * 84.13761 * 7 6 4 31 31 H 1.09001 * 109.47532 * 171.24149 * 9 8 7 32 32 H 1.08995 * 109.47385 * 291.24869 * 9 8 7 33 33 H 1.09006 * 109.47037 * 51.24377 * 9 8 7 34 34 H 0.97004 * 119.99893 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.46808 * 179.97438 * 19 3 2 36 36 H 1.09006 * 109.47273 * 299.99334 * 19 3 2 37 37 H 1.09001 * 109.47347 * 299.99989 * 20 19 3 38 38 H 1.08996 * 109.47478 * 179.97438 * 20 19 3 39 39 H 1.08997 * 109.47277 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47169 * 59.99863 * 21 20 19 41 41 H 1.09001 * 109.47151 * 299.99996 * 22 21 20 42 42 H 1.09007 * 109.47076 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.47742 * 59.99964 * 23 3 2 44 44 H 1.09004 * 109.47009 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6857 2.0083 -1.3198 5 1 2.2410 2.9430 -1.3981 6 6 2.0180 1.0832 -2.5175 7 6 1.0679 1.6557 -3.6046 8 6 -0.1589 2.0876 -2.7730 9 6 -1.2390 1.0062 -2.8411 10 6 -0.7027 3.3896 -3.3025 11 1 -0.2332 3.8660 -4.1504 12 6 -1.7997 3.9726 -2.7042 13 7 -2.3717 3.3923 -1.6719 14 14 -2.4742 5.5860 -3.3609 15 1 -2.8885 5.4100 -4.7760 16 1 -3.6476 5.9988 -2.5497 17 1 -1.4229 6.6319 -3.2793 18 8 0.2744 2.2571 -1.4183 19 6 1.4395 2.1178 1.1642 20 6 1.7639 1.4151 2.4839 21 6 3.2815 1.2977 2.6395 22 6 3.8522 0.4854 1.4754 23 6 3.5277 1.1881 0.1555 24 1 -0.3633 -1.0222 0.1056 25 1 -0.3633 0.6026 0.8326 26 1 -0.3634 0.4197 -0.9380 27 1 1.7755 0.0449 -2.2912 28 1 3.0617 1.1844 -2.8151 29 1 0.7957 0.8857 -4.3264 30 1 1.5183 2.5127 -4.1055 31 1 -2.0337 1.2411 -2.1331 32 1 -1.6507 0.9668 -3.8496 33 1 -0.8020 0.0398 -2.5892 34 1 -3.1432 3.8027 -1.2508 35 1 1.8831 3.1134 1.1644 36 1 0.3583 2.2015 1.0533 37 1 1.3206 0.4193 2.4839 38 1 1.3577 1.9939 3.3133 39 1 3.5127 0.7967 3.5795 40 1 3.7248 2.2935 2.6395 41 1 3.4089 -0.5104 1.4754 42 1 4.9335 0.4022 1.5860 43 1 3.9344 0.6094 -0.6738 44 1 3.9710 2.1839 0.1560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320059345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:10 Heat of formation + Delta-G solvation = -118.853428 kcal Electronic energy + Delta-G solvation = -23275.554802 eV Core-core repulsion = 20191.811683 eV Total energy + Delta-G solvation = -3083.743119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42973 -39.14927 -36.53608 -34.89397 -32.85895 -32.61102 -31.50103 -30.08743 -27.79075 -26.85301 -26.06837 -23.73562 -22.93817 -21.36874 -21.09617 -20.46969 -18.40766 -17.50718 -16.91837 -16.61244 -16.38260 -16.19278 -15.62499 -15.20038 -14.64876 -14.32085 -14.20898 -13.92961 -13.89948 -13.59561 -13.26073 -13.12416 -12.99763 -12.90035 -12.79254 -12.57993 -12.36860 -12.20589 -12.16748 -11.94481 -11.90743 -11.74475 -11.37159 -11.21189 -11.09603 -10.91760 -10.79747 -10.54217 -10.23449 -9.33487 -8.00103 -6.21519 1.40567 1.41146 1.48108 2.43808 3.00688 3.10922 3.50484 3.81683 3.89254 3.99858 4.05135 4.19219 4.34822 4.41359 4.46972 4.60479 4.63340 4.66620 4.73589 4.75697 4.78132 4.84258 4.84561 4.95576 4.97878 5.03837 5.07244 5.14082 5.19688 5.22550 5.30264 5.33307 5.37805 5.39041 5.46055 5.54377 5.60429 5.63877 5.74780 6.11461 6.37263 6.47601 6.70109 7.16577 7.53302 8.99745 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.006690 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.533649 B = 4184.462660 C = 4482.096880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.377 6.377 3 C 0.131 3.869 4 C 0.045 3.955 5 H 0.044 0.956 6 C -0.133 4.133 7 C -0.140 4.140 8 C 0.217 3.783 9 C -0.125 4.125 10 C -0.556 4.556 11 H 0.048 0.952 12 C 0.038 3.962 13 N -0.884 5.884 14 Si 0.942 3.058 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.278 1.278 18 O -0.365 6.365 19 C -0.137 4.137 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.101 4.101 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.060 0.940 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.931 -5.822 5.671 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.296 6.296 3 C 0.091 3.909 4 C -0.013 4.013 5 H 0.062 0.938 6 C -0.170 4.170 7 C -0.178 4.178 8 C 0.179 3.821 9 C -0.183 4.183 10 C -0.593 4.593 11 H 0.066 0.934 12 C -0.164 4.164 13 N -0.521 5.521 14 Si 0.768 3.232 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.203 1.203 18 O -0.285 6.285 19 C -0.175 4.175 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.138 4.138 24 H 0.096 0.904 25 H 0.048 0.952 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.747 -5.925 5.966 13.645 hybrid contribution -1.080 1.392 -0.673 1.886 sum 9.667 -4.533 5.293 11.917 Atomic orbital electron populations 1.23246 0.81292 1.00980 1.03133 1.87740 1.19824 1.27154 1.94862 1.21543 0.94437 0.82905 0.92022 1.23523 0.85886 0.96067 0.95847 0.93770 1.23080 0.99820 0.99715 0.94389 1.23128 0.96696 0.99699 0.98264 1.19634 0.90378 0.92750 0.79325 1.21891 1.00507 0.95919 0.99973 1.21629 1.13706 1.08798 1.15213 0.93360 1.25619 0.96507 0.99671 0.94635 1.70086 1.21243 1.39273 1.21476 0.85897 0.77727 0.80991 0.78572 1.19613 1.21038 1.20320 1.88687 1.19373 1.90558 1.29853 1.21941 1.00797 0.99051 0.95714 1.21443 0.97581 1.00123 0.95680 1.21524 0.94154 1.00646 0.98759 1.21425 1.01026 0.99047 0.93118 1.21525 0.90808 1.02024 0.99484 0.90375 0.95234 0.90737 0.90520 0.89494 0.91245 0.92536 0.92299 0.94806 0.94703 0.93446 0.92093 0.93430 0.92606 0.92022 0.90642 0.91660 0.92179 0.90019 0.90738 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.61 113.37 1.09 1.44 16 2 O -0.38 -13.27 7.75 -147.22 -1.14 -14.41 16 3 C 0.13 4.38 0.38 -10.79 0.00 4.37 16 4 C 0.05 1.80 2.63 31.26 0.08 1.88 16 5 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 6 C -0.13 -4.70 5.83 32.05 0.19 -4.51 16 7 C -0.14 -5.75 6.07 31.85 0.19 -5.55 16 8 C 0.22 10.64 0.76 -11.07 -0.01 10.63 16 9 C -0.13 -6.01 6.95 71.98 0.50 -5.51 16 10 C -0.56 -30.64 8.22 25.60 0.21 -30.43 16 11 H 0.05 2.65 7.52 -2.91 -0.02 2.63 16 12 C 0.04 2.13 5.26 84.66 0.45 2.57 16 13 N -0.88 -50.72 11.03 21.45 0.24 -50.48 16 14 Si 0.94 43.91 29.54 68.60 2.03 45.94 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 18 O -0.36 -17.81 6.67 -147.22 -0.98 -18.79 16 19 C -0.14 -4.73 4.00 30.59 0.12 -4.60 16 20 C -0.11 -3.05 5.69 30.60 0.17 -2.88 16 21 C -0.11 -2.47 5.92 30.60 0.18 -2.29 16 22 C -0.11 -2.40 5.78 30.60 0.18 -2.22 16 23 C -0.10 -2.62 4.82 30.60 0.15 -2.48 16 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.03 1.16 5.82 -2.38 -0.01 1.15 16 26 H 0.07 3.20 2.38 -2.39 -0.01 3.20 16 27 H 0.08 2.73 7.02 -2.39 -0.02 2.71 16 28 H 0.09 2.58 8.12 -2.38 -0.02 2.56 16 29 H 0.07 2.64 7.82 -2.39 -0.02 2.62 16 30 H 0.06 2.34 7.65 -2.38 -0.02 2.32 16 31 H 0.06 3.14 6.32 -2.39 -0.02 3.13 16 32 H 0.03 1.58 8.13 -2.39 -0.02 1.56 16 33 H 0.03 1.48 6.88 -2.38 -0.02 1.47 16 34 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.99 5.78 -2.38 -0.01 1.98 16 37 H 0.06 1.63 7.38 -2.39 -0.02 1.61 16 38 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.46 7.68 -2.39 -0.02 1.45 16 42 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.84 7.60 -2.39 -0.02 1.82 16 44 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -60.38 317.77 4.60 -55.78 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.96 Total: 21.57 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 3.50 Total: -39.60 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.48 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.12 Total: -33.21 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -60.38 4.60 -55.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.071 kcal (2) G-P(sol) polarization free energy of solvation -60.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds