Wall clock time and date at job start Mon Mar 30 2020 07:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99426 * 2 1 4 4 C 1.53003 * 109.47228 * 294.39161 * 3 2 1 5 5 H 1.08997 * 110.55647 * 183.61020 * 4 3 2 6 6 C 1.54990 * 110.62001 * 306.49476 * 4 3 2 7 7 C 1.54813 * 102.09426 * 155.51911 * 6 4 3 8 8 C 1.54099 * 104.18630 * 339.12232 * 7 6 4 9 9 C 1.53001 * 109.88022 * 117.39267 * 8 7 6 10 10 C 1.50702 * 109.87714 * 238.39416 * 8 7 6 11 11 H 1.08002 * 119.99890 * 359.97438 * 10 8 7 12 12 C 1.37874 * 119.99921 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00341 * 359.97438 * 12 10 8 14 14 Si 1.86809 * 119.99656 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47042 * 60.00373 * 14 12 10 16 16 H 1.48502 * 109.46678 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47313 * 299.99763 * 14 12 10 18 18 O 1.43738 * 107.29354 * 357.96435 * 8 7 6 19 19 C 1.53001 * 109.47021 * 174.39736 * 3 2 1 20 20 C 1.52998 * 109.47133 * 299.99669 * 19 3 2 21 21 C 1.52999 * 109.47107 * 300.00282 * 20 19 3 22 22 C 1.52999 * 109.47508 * 59.99508 * 21 20 19 23 23 C 1.52993 * 109.47692 * 54.39585 * 3 2 1 24 24 H 1.08996 * 109.46908 * 68.53559 * 1 2 3 25 25 H 1.09001 * 109.46342 * 188.52954 * 1 2 3 26 26 H 1.08999 * 109.47103 * 308.52559 * 1 2 3 27 27 H 1.09002 * 110.91025 * 273.71831 * 6 4 3 28 28 H 1.09000 * 110.91231 * 37.32400 * 6 4 3 29 29 H 1.09003 * 110.48268 * 97.79552 * 7 6 4 30 30 H 1.09000 * 110.49169 * 220.31179 * 7 6 4 31 31 H 1.09001 * 109.47014 * 60.00079 * 9 8 7 32 32 H 1.09002 * 109.46686 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.46959 * 299.99690 * 9 8 7 34 34 H 0.96999 * 119.99795 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.47188 * 59.99857 * 19 3 2 36 36 H 1.09000 * 109.47296 * 179.97438 * 19 3 2 37 37 H 1.09000 * 109.47221 * 179.97438 * 20 19 3 38 38 H 1.09000 * 109.47045 * 59.99827 * 20 19 3 39 39 H 1.09000 * 109.46796 * 299.99698 * 21 20 19 40 40 H 1.09004 * 109.46854 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47066 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.46505 * 59.99958 * 22 21 20 43 43 H 1.09000 * 109.47743 * 180.02562 * 23 3 2 44 44 H 1.09000 * 109.47159 * 299.99958 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6733 2.0137 -1.3138 5 1 2.1611 2.9874 -1.3597 6 6 2.0842 1.1397 -2.5260 7 6 1.1415 1.6625 -3.6372 8 6 -0.0132 2.3332 -2.8682 9 6 -0.0598 3.8265 -3.1979 10 6 -1.3217 1.6852 -3.2411 11 1 -1.3390 0.8751 -3.9551 12 6 -2.4969 2.1274 -2.6717 13 7 -2.4761 3.1143 -1.8027 14 14 -4.1190 1.3247 -3.1346 15 1 -4.0735 -0.1187 -2.7885 16 1 -5.2250 1.9782 -2.3897 17 1 -4.3480 1.4769 -4.5939 18 8 0.2440 2.1500 -1.4659 19 6 3.5291 1.1876 0.1408 20 6 3.8661 0.4795 1.4545 21 6 3.3062 1.2869 2.6273 22 6 1.7873 1.4049 2.4865 23 6 1.4504 2.1130 1.1727 24 1 -0.3633 0.3760 -0.9564 25 1 -0.3632 -1.0164 0.1524 26 1 -0.3633 0.6401 0.8040 27 1 3.1281 1.3076 -2.7906 28 1 1.9003 0.0843 -2.3247 29 1 1.6570 2.3910 -4.2631 30 1 0.7700 0.8357 -4.2426 31 1 -0.2168 3.9574 -4.2686 32 1 -0.8787 4.2939 -2.6511 33 1 0.8827 4.2919 -2.9092 34 1 -3.3029 3.4251 -1.4018 35 1 3.9279 0.6124 -0.6948 36 1 3.9724 2.1834 0.1404 37 1 4.9482 0.3951 1.5547 38 1 3.4228 -0.5163 1.4546 39 1 3.7495 2.2827 2.6273 40 1 3.5459 0.7821 3.5632 41 1 1.3885 1.9798 3.3223 42 1 1.3441 0.4091 2.4865 43 1 1.8933 3.1090 1.1725 44 1 0.3683 2.1971 1.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320059354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:14 Heat of formation + Delta-G solvation = -106.665115 kcal Electronic energy + Delta-G solvation = -23238.410848 eV Core-core repulsion = 20155.196254 eV Total energy + Delta-G solvation = -3083.214594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88085 -37.59936 -35.22186 -32.95516 -31.30173 -30.74929 -30.23440 -28.58552 -25.69768 -25.36552 -24.42306 -22.48916 -21.54074 -19.86579 -19.27728 -19.15367 -16.82522 -15.81100 -15.28292 -14.96319 -14.77316 -14.50445 -14.05533 -13.44177 -13.27044 -13.10615 -12.85153 -12.51689 -12.25432 -12.02973 -11.89890 -11.67481 -11.50048 -11.20765 -10.91151 -10.83548 -10.76952 -10.69123 -10.59751 -10.42863 -10.31046 -10.14144 -10.08024 -9.77716 -9.62049 -9.26521 -9.04328 -8.61522 -8.50516 -7.71184 -5.96729 -4.11775 3.30699 3.35776 3.38558 4.41155 4.44426 4.78143 5.04008 5.12130 5.16299 5.39274 5.43089 5.58397 5.67362 5.76942 5.81648 5.87573 5.90267 5.92427 6.00569 6.14250 6.23611 6.25964 6.31817 6.33555 6.42885 6.46241 6.50506 6.51117 6.57036 6.67264 6.74265 6.82041 6.91223 6.92249 6.98832 7.17237 7.27229 7.32290 7.77493 8.00812 8.13079 8.38125 8.57849 9.00958 9.57839 11.04853 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.006927 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.501025 B = 4041.376282 C = 4439.321825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.379 6.379 3 C 0.136 3.864 4 C 0.045 3.955 5 H 0.049 0.951 6 C -0.142 4.142 7 C -0.142 4.142 8 C 0.226 3.774 9 C -0.149 4.149 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.081 3.919 13 N -0.860 5.860 14 Si 0.885 3.115 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 O -0.333 6.333 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.142 4.142 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.090 0.910 33 H 0.008 0.992 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.902 -2.389 5.446 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.299 6.299 3 C 0.096 3.904 4 C -0.014 4.014 5 H 0.067 0.933 6 C -0.180 4.180 7 C -0.180 4.180 8 C 0.188 3.812 9 C -0.207 4.207 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.124 4.124 13 N -0.496 5.496 14 Si 0.713 3.287 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 O -0.253 6.253 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.180 4.180 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.724 -2.435 5.727 11.545 hybrid contribution -0.953 -0.059 -0.440 1.051 sum 8.771 -2.494 5.288 10.541 Atomic orbital electron populations 1.23171 0.80139 0.99802 1.04868 1.87730 1.20850 1.26257 1.95014 1.21272 0.92396 0.83823 0.92918 1.23490 0.87838 0.96017 0.94048 0.93341 1.23002 0.97966 1.01034 0.95981 1.23059 0.97164 0.99906 0.97856 1.19607 0.92081 0.91473 0.78014 1.22170 0.99955 0.98976 0.99551 1.21027 0.90044 1.19093 1.25603 0.92234 1.24992 0.98753 0.94422 0.94234 1.69941 1.27010 1.25527 1.27150 0.86790 0.83493 0.79878 0.78588 1.20141 1.21278 1.20261 1.89249 1.15735 1.92524 1.27744 1.21473 0.93561 1.00827 0.98139 1.21431 0.99413 1.00024 0.94184 1.21523 0.96239 0.99841 0.97815 1.21467 0.95570 1.01099 0.97123 1.22045 1.03211 0.98607 0.94093 0.88300 0.92501 0.94410 0.92864 0.90554 0.93327 0.91844 0.94853 0.89133 0.97324 0.93057 0.91360 0.91273 0.92691 0.91154 0.92524 0.92659 0.92723 0.91638 0.91911 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.62 101.05 0.97 1.29 16 2 O -0.38 -7.13 7.94 -41.59 -0.33 -7.46 16 3 C 0.14 2.35 0.38 -90.62 -0.03 2.32 16 4 C 0.05 0.89 2.51 -25.68 -0.06 0.83 16 5 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 6 C -0.14 -2.69 5.70 -24.72 -0.14 -2.83 16 7 C -0.14 -2.99 6.26 -25.20 -0.16 -3.15 16 8 C 0.23 5.49 0.74 -91.20 -0.07 5.42 16 9 C -0.15 -3.59 8.38 37.16 0.31 -3.28 16 10 C -0.52 -13.87 7.95 -34.44 -0.27 -14.14 16 11 H 0.06 1.58 7.34 -52.49 -0.39 1.20 16 12 C 0.08 2.18 5.26 -17.82 -0.09 2.08 16 13 N -0.86 -23.81 10.93 55.43 0.61 -23.20 16 14 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 O -0.33 -7.93 6.19 -41.59 -0.26 -8.19 16 19 C -0.10 -1.47 4.79 -26.73 -0.13 -1.60 16 20 C -0.11 -1.44 5.78 -26.73 -0.15 -1.60 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 22 C -0.12 -1.65 5.74 -26.73 -0.15 -1.80 16 23 C -0.14 -2.40 4.07 -26.74 -0.11 -2.51 16 24 H 0.10 2.35 5.34 -51.93 -0.28 2.07 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.75 5.85 -51.93 -0.30 0.45 16 27 H 0.05 0.87 8.07 -51.93 -0.42 0.46 16 28 H 0.08 1.50 7.17 -51.93 -0.37 1.13 16 29 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 30 H 0.06 1.34 7.41 -51.93 -0.38 0.96 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 33 H 0.01 0.17 8.12 -51.93 -0.42 -0.25 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.67 5.88 -51.93 -0.31 1.37 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -27.26 322.09 -8.10 -35.36 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.69 Total: 3.43 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -0.25 Total: -20.56 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.61 Total: -23.20 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.59 Total: -15.65 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.26 -8.10 -35.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.308 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds