Wall clock time and date at job start Mon Mar 30 2020 07:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99426 * 2 1 4 4 C 1.53003 * 109.47228 * 294.39161 * 3 2 1 5 5 H 1.08997 * 110.55647 * 183.61020 * 4 3 2 6 6 C 1.54990 * 110.62001 * 306.49476 * 4 3 2 7 7 C 1.54813 * 102.09426 * 155.51911 * 6 4 3 8 8 C 1.54099 * 104.18630 * 339.12232 * 7 6 4 9 9 C 1.53001 * 109.88022 * 117.39267 * 8 7 6 10 10 C 1.50702 * 109.87714 * 238.39416 * 8 7 6 11 11 H 1.08002 * 119.99890 * 359.97438 * 10 8 7 12 12 C 1.37874 * 119.99921 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00341 * 359.97438 * 12 10 8 14 14 Si 1.86809 * 119.99656 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47042 * 60.00373 * 14 12 10 16 16 H 1.48502 * 109.46678 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47313 * 299.99763 * 14 12 10 18 18 O 1.43738 * 107.29354 * 357.96435 * 8 7 6 19 19 C 1.53001 * 109.47021 * 174.39736 * 3 2 1 20 20 C 1.52998 * 109.47133 * 299.99669 * 19 3 2 21 21 C 1.52999 * 109.47107 * 300.00282 * 20 19 3 22 22 C 1.52999 * 109.47508 * 59.99508 * 21 20 19 23 23 C 1.52993 * 109.47692 * 54.39585 * 3 2 1 24 24 H 1.08996 * 109.46908 * 68.53559 * 1 2 3 25 25 H 1.09001 * 109.46342 * 188.52954 * 1 2 3 26 26 H 1.08999 * 109.47103 * 308.52559 * 1 2 3 27 27 H 1.09002 * 110.91025 * 273.71831 * 6 4 3 28 28 H 1.09000 * 110.91231 * 37.32400 * 6 4 3 29 29 H 1.09003 * 110.48268 * 97.79552 * 7 6 4 30 30 H 1.09000 * 110.49169 * 220.31179 * 7 6 4 31 31 H 1.09001 * 109.47014 * 60.00079 * 9 8 7 32 32 H 1.09002 * 109.46686 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.46959 * 299.99690 * 9 8 7 34 34 H 0.96999 * 119.99795 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.47188 * 59.99857 * 19 3 2 36 36 H 1.09000 * 109.47296 * 179.97438 * 19 3 2 37 37 H 1.09000 * 109.47221 * 179.97438 * 20 19 3 38 38 H 1.09000 * 109.47045 * 59.99827 * 20 19 3 39 39 H 1.09000 * 109.46796 * 299.99698 * 21 20 19 40 40 H 1.09004 * 109.46854 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47066 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.46505 * 59.99958 * 22 21 20 43 43 H 1.09000 * 109.47743 * 180.02562 * 23 3 2 44 44 H 1.09000 * 109.47159 * 299.99958 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6733 2.0137 -1.3138 5 1 2.1611 2.9874 -1.3597 6 6 2.0842 1.1397 -2.5260 7 6 1.1415 1.6625 -3.6372 8 6 -0.0132 2.3332 -2.8682 9 6 -0.0598 3.8265 -3.1979 10 6 -1.3217 1.6852 -3.2411 11 1 -1.3390 0.8751 -3.9551 12 6 -2.4969 2.1274 -2.6717 13 7 -2.4761 3.1143 -1.8027 14 14 -4.1190 1.3247 -3.1346 15 1 -4.0735 -0.1187 -2.7885 16 1 -5.2250 1.9782 -2.3897 17 1 -4.3480 1.4769 -4.5939 18 8 0.2440 2.1500 -1.4659 19 6 3.5291 1.1876 0.1408 20 6 3.8661 0.4795 1.4545 21 6 3.3062 1.2869 2.6273 22 6 1.7873 1.4049 2.4865 23 6 1.4504 2.1130 1.1727 24 1 -0.3633 0.3760 -0.9564 25 1 -0.3632 -1.0164 0.1524 26 1 -0.3633 0.6401 0.8040 27 1 3.1281 1.3076 -2.7906 28 1 1.9003 0.0843 -2.3247 29 1 1.6570 2.3910 -4.2631 30 1 0.7700 0.8357 -4.2426 31 1 -0.2168 3.9574 -4.2686 32 1 -0.8787 4.2939 -2.6511 33 1 0.8827 4.2919 -2.9092 34 1 -3.3029 3.4251 -1.4018 35 1 3.9279 0.6124 -0.6948 36 1 3.9724 2.1834 0.1404 37 1 4.9482 0.3951 1.5547 38 1 3.4228 -0.5163 1.4546 39 1 3.7495 2.2827 2.6273 40 1 3.5459 0.7821 3.5632 41 1 1.3885 1.9798 3.3223 42 1 1.3441 0.4091 2.4865 43 1 1.8933 3.1090 1.1725 44 1 0.3683 2.1971 1.0724 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320059354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:13 Heat of formation + Delta-G solvation = -120.352071 kcal Electronic energy + Delta-G solvation = -23239.004359 eV Core-core repulsion = 20155.196254 eV Total energy + Delta-G solvation = -3083.808105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34627 -39.18245 -36.55032 -34.89138 -32.84095 -32.41656 -31.50643 -30.18665 -27.43442 -27.15444 -26.07177 -23.72567 -22.92338 -21.27221 -21.06890 -20.49211 -18.68558 -17.29683 -16.91382 -16.47521 -16.28705 -16.19969 -15.35193 -15.17954 -14.81822 -14.46243 -14.33122 -14.12564 -13.86096 -13.51769 -13.29218 -13.10736 -12.96450 -12.86818 -12.73725 -12.53715 -12.35902 -12.24735 -12.12245 -11.91863 -11.86954 -11.76170 -11.37105 -11.26276 -11.08342 -10.94587 -10.68973 -10.55187 -10.20080 -9.45660 -8.00753 -6.21388 1.41647 1.42641 1.49214 2.44055 3.02308 3.09611 3.53856 3.81822 3.89930 4.02475 4.14971 4.19343 4.29853 4.42622 4.47671 4.58817 4.64033 4.65250 4.70013 4.76626 4.80297 4.85538 4.87943 4.94533 4.98383 5.05230 5.10907 5.12796 5.20198 5.29030 5.30378 5.32522 5.38634 5.40719 5.47583 5.52949 5.58298 5.64091 5.70942 6.14989 6.40747 6.49817 6.65257 7.10279 7.51420 8.99346 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.006927 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.501025 B = 4041.376282 C = 4439.321825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.134 3.866 4 C 0.037 3.963 5 H 0.051 0.949 6 C -0.130 4.130 7 C -0.140 4.140 8 C 0.213 3.787 9 C -0.141 4.141 10 C -0.536 4.536 11 H 0.052 0.948 12 C 0.040 3.960 13 N -0.885 5.885 14 Si 0.939 3.061 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.271 1.271 18 O -0.354 6.354 19 C -0.100 4.100 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.111 4.111 23 C -0.139 4.139 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.257 0.743 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.954 -2.934 6.031 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.094 3.906 4 C -0.022 4.022 5 H 0.069 0.931 6 C -0.167 4.167 7 C -0.178 4.178 8 C 0.175 3.825 9 C -0.199 4.199 10 C -0.574 4.574 11 H 0.070 0.930 12 C -0.163 4.163 13 N -0.522 5.522 14 Si 0.765 3.235 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.197 1.197 18 O -0.274 6.274 19 C -0.138 4.138 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.176 4.176 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.786 -2.985 6.306 13.696 hybrid contribution -1.567 0.138 -0.627 1.694 sum 10.219 -2.847 5.679 12.033 Atomic orbital electron populations 1.22902 0.81075 1.00292 1.02476 1.87733 1.19809 1.27327 1.94846 1.21480 0.94537 0.82883 0.91706 1.23752 0.85890 0.96651 0.95878 0.93118 1.22919 0.99201 1.00033 0.94582 1.22979 0.96686 0.99821 0.98280 1.19651 0.92441 0.91384 0.78982 1.22050 0.99520 0.99180 0.99144 1.21327 0.91712 1.18882 1.25447 0.93028 1.25602 1.01510 0.94899 0.94278 1.70074 1.27355 1.26645 1.28104 0.85927 0.80143 0.78935 0.78454 1.20015 1.21106 1.19657 1.89217 1.18392 1.92667 1.27136 1.21528 0.90623 1.02186 0.99426 1.21426 1.01047 0.98993 0.93252 1.21518 0.94104 1.00771 0.98600 1.21439 0.97598 1.00051 0.95799 1.21977 1.00708 0.99304 0.95638 0.91938 0.90960 0.95108 0.89637 0.91553 0.91806 0.92619 0.94664 0.92059 0.95758 0.93396 0.90943 0.89636 0.89962 0.92505 0.91321 0.90741 0.91805 0.92921 0.91395 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.17 9.62 113.37 1.09 2.26 16 2 O -0.38 -13.99 7.94 -142.90 -1.13 -15.12 16 3 C 0.13 4.47 0.38 -10.79 0.00 4.47 16 4 C 0.04 1.43 2.51 31.28 0.08 1.51 16 5 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 6 C -0.13 -4.70 5.70 31.89 0.18 -4.52 16 7 C -0.14 -5.79 6.26 31.58 0.20 -5.59 16 8 C 0.21 10.49 0.74 -11.17 -0.01 10.48 16 9 C -0.14 -6.88 8.38 71.98 0.60 -6.28 16 10 C -0.54 -29.19 7.95 25.60 0.20 -28.99 16 11 H 0.05 2.80 7.34 -2.91 -0.02 2.78 16 12 C 0.04 2.17 5.26 84.65 0.45 2.62 16 13 N -0.88 -50.44 10.93 21.45 0.23 -50.20 16 14 Si 0.94 43.43 29.54 68.60 2.03 45.46 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 O -0.35 -17.18 6.19 -142.90 -0.88 -18.07 16 19 C -0.10 -2.57 4.79 30.59 0.15 -2.42 16 20 C -0.11 -2.42 5.78 30.59 0.18 -2.24 16 21 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 22 C -0.11 -3.01 5.74 30.59 0.18 -2.84 16 23 C -0.14 -4.62 4.07 30.59 0.12 -4.49 16 24 H 0.06 3.06 5.34 -2.39 -0.01 3.05 16 25 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.03 1.27 5.85 -2.39 -0.01 1.26 16 27 H 0.09 2.54 8.07 -2.39 -0.02 2.52 16 28 H 0.07 2.54 7.17 -2.39 -0.02 2.52 16 29 H 0.06 2.40 7.70 -2.39 -0.02 2.38 16 30 H 0.05 2.35 7.41 -2.39 -0.02 2.33 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 3.35 6.00 -2.39 -0.01 3.34 16 33 H 0.02 1.05 8.12 -2.39 -0.02 1.03 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.07 1.81 7.44 -2.38 -0.02 1.79 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.42 7.68 -2.39 -0.02 1.40 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.55 7.53 -2.39 -0.02 1.53 16 43 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.88 5.88 -2.39 -0.01 1.87 16 Total: -1.00 -59.68 322.09 4.79 -54.89 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.95 Total: 21.29 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 3.59 Total: -38.25 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.23 Total: -50.20 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -2.02 Total: -33.19 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -59.68 4.79 -54.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.463 kcal (2) G-P(sol) polarization free energy of solvation -59.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds