Wall clock time and date at job start Mon Mar 30 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.53000 * 109.46825 * 301.98358 * 3 2 1 5 5 H 1.08998 * 110.28099 * 60.70133 * 4 3 2 6 6 C 1.54947 * 110.31011 * 298.61077 * 4 3 2 7 7 C 1.55311 * 100.94359 * 204.64113 * 6 4 3 8 8 C 1.54381 * 102.25083 * 34.13240 * 7 6 4 9 9 C 1.52999 * 109.83052 * 219.12872 * 8 7 6 10 10 C 1.50703 * 109.83338 * 98.24557 * 8 7 6 11 11 H 1.08000 * 119.99215 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00541 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99613 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00317 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47011 * 60.00325 * 14 12 10 16 16 H 1.48500 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47042 * 300.00253 * 14 12 10 18 18 O 1.43380 * 107.61403 * 338.56344 * 8 7 6 19 19 C 1.52993 * 109.46980 * 181.98463 * 3 2 1 20 20 C 1.53000 * 109.47256 * 299.99631 * 19 3 2 21 21 C 1.52999 * 109.47079 * 300.00117 * 20 19 3 22 22 C 1.53001 * 109.46766 * 59.99930 * 21 20 19 23 23 C 1.52991 * 109.47275 * 299.99797 * 22 21 20 24 24 H 1.08996 * 109.47137 * 61.93830 * 1 2 3 25 25 H 1.09002 * 109.46802 * 181.93877 * 1 2 3 26 26 H 1.09004 * 109.46965 * 301.93763 * 1 2 3 27 27 H 1.09005 * 111.12427 * 322.55746 * 6 4 3 28 28 H 1.08998 * 111.12764 * 86.71958 * 6 4 3 29 29 H 1.09001 * 110.84330 * 152.32150 * 7 6 4 30 30 H 1.08999 * 110.84900 * 275.94251 * 7 6 4 31 31 H 1.09005 * 109.46699 * 60.00671 * 9 8 7 32 32 H 1.09003 * 109.47311 * 179.97438 * 9 8 7 33 33 H 1.08995 * 109.46977 * 300.00057 * 9 8 7 34 34 H 0.97001 * 119.99975 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47502 * 59.99782 * 19 3 2 36 36 H 1.09005 * 109.46964 * 179.97438 * 19 3 2 37 37 H 1.09003 * 109.47135 * 180.02562 * 20 19 3 38 38 H 1.08996 * 109.46961 * 60.00188 * 20 19 3 39 39 H 1.08996 * 109.47282 * 299.99874 * 21 20 19 40 40 H 1.08997 * 109.46786 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46708 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47265 * 59.99934 * 22 21 20 43 43 H 1.09005 * 109.47607 * 300.00152 * 23 22 21 44 44 H 1.09000 * 109.47272 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5196 2.0821 -1.2236 5 1 0.4350 2.1865 -1.1949 6 6 1.9566 1.3656 -2.5261 7 6 1.9611 2.5523 -3.5281 8 6 2.4150 3.7300 -2.6390 9 6 1.6333 4.9918 -3.0101 10 6 3.8912 3.9706 -2.8236 11 1 4.4581 3.3524 -3.5039 12 6 4.5178 4.9805 -2.1248 13 7 3.8273 5.7336 -1.2967 14 14 6.3475 5.2792 -2.3541 15 1 6.6214 5.6041 -3.7770 16 1 6.7751 6.4137 -1.4967 17 1 7.1001 4.0576 -1.9715 18 8 2.1436 3.3749 -1.2767 19 6 3.5346 1.1851 -0.0500 20 6 4.0253 0.4085 1.1736 21 6 3.6137 1.1500 2.4470 22 6 2.0893 1.2704 2.4969 23 6 1.5987 2.0470 1.2734 24 1 -0.3633 0.4834 -0.9068 25 1 -0.3633 -1.0271 0.0348 26 1 -0.3633 0.5437 0.8721 27 1 2.9527 0.9352 -2.4225 28 1 1.2314 0.6067 -2.8193 29 1 2.6742 2.3770 -4.3336 30 1 0.9614 2.7287 -3.9249 31 1 0.5680 4.8166 -2.8594 32 1 1.9579 5.8191 -2.3789 33 1 1.8167 5.2384 -4.0558 34 1 4.2681 6.4444 -0.8053 35 1 3.8279 0.6568 -0.9571 36 1 3.9779 2.1809 -0.0504 37 1 5.1114 0.3231 1.1382 38 1 3.5820 -0.5873 1.1736 39 1 4.0570 2.1458 2.4470 40 1 3.9629 0.5965 3.3186 41 1 1.7960 1.7983 3.4043 42 1 1.6460 0.2747 2.4969 43 1 2.0419 3.0428 1.2733 44 1 0.5127 2.1331 1.3092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320059362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:17 Heat of formation + Delta-G solvation = -106.523072 kcal Electronic energy + Delta-G solvation = -23224.612490 eV Core-core repulsion = 20141.404056 eV Total energy + Delta-G solvation = -3083.208434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88616 -37.58441 -35.49355 -32.96394 -31.01198 -30.77708 -30.19767 -28.56472 -26.28764 -25.27958 -24.47108 -22.47651 -21.41920 -19.89473 -19.55022 -18.75306 -16.79603 -15.81699 -15.34118 -15.12552 -15.00650 -14.51222 -14.04705 -13.47810 -13.40017 -13.06274 -12.80276 -12.55185 -12.42980 -12.00864 -11.71534 -11.69853 -11.43784 -11.22284 -10.99927 -10.84296 -10.68733 -10.54152 -10.53247 -10.43644 -10.27520 -10.14685 -10.02693 -9.91964 -9.68107 -9.21016 -9.08265 -8.80264 -8.44945 -7.77495 -5.91884 -4.07562 3.32410 3.37597 3.40218 4.18317 4.44273 4.94330 5.08572 5.21377 5.23978 5.48563 5.55302 5.55965 5.62787 5.64494 5.71229 5.81446 5.89259 5.90286 5.96911 6.05530 6.07240 6.15723 6.26951 6.37406 6.41635 6.46219 6.53162 6.61169 6.67339 6.72685 6.74998 6.80886 6.84300 6.94270 6.99555 7.12203 7.18659 7.37160 7.70501 7.81226 8.12849 8.41674 8.66236 9.07817 9.62958 11.09501 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.008337 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.585617 B = 3357.734466 C = 4092.966770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.129 3.871 4 C 0.056 3.944 5 H 0.042 0.958 6 C -0.140 4.140 7 C -0.144 4.144 8 C 0.230 3.770 9 C -0.141 4.141 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.083 3.917 13 N -0.860 5.860 14 Si 0.883 3.117 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 O -0.340 6.340 19 C -0.097 4.097 20 C -0.115 4.115 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.137 4.137 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.009 0.991 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.259 0.741 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 -8.808 4.109 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.293 6.293 3 C 0.090 3.910 4 C -0.003 4.003 5 H 0.060 0.940 6 C -0.177 4.177 7 C -0.182 4.182 8 C 0.193 3.807 9 C -0.199 4.199 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.122 4.122 13 N -0.497 5.497 14 Si 0.710 3.290 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 O -0.260 6.260 19 C -0.134 4.134 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.175 4.175 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.512 -8.670 4.411 10.723 hybrid contribution 0.608 0.297 -0.356 0.765 sum -3.904 -8.373 4.056 10.089 Atomic orbital electron populations 1.22695 0.82793 1.01585 1.00102 1.87921 1.18475 1.28039 1.94912 1.21454 0.94281 0.81812 0.93425 1.23139 0.95482 0.87656 0.94009 0.93993 1.23148 1.01604 0.97447 0.95523 1.23223 0.99617 0.96429 0.98920 1.19644 0.94107 0.89099 0.77861 1.22011 0.95340 1.02480 1.00035 1.21158 0.93120 1.16276 1.25925 0.92551 1.24953 0.97436 0.95406 0.94411 1.69941 1.35154 1.18975 1.25603 0.86832 0.86273 0.77828 0.78031 1.20346 1.21302 1.20165 1.88765 1.78969 1.29015 1.29238 1.21513 0.91862 1.02595 0.97438 1.21481 0.99671 0.99325 0.94772 1.21508 0.95916 1.00668 0.97375 1.21421 0.96024 1.00142 0.97291 1.22018 1.00259 1.00893 0.94316 0.94109 0.90564 0.94126 0.90369 0.92646 0.91433 0.93393 0.97204 0.89081 0.94646 0.93126 0.91599 0.88512 0.92704 0.91967 0.91935 0.92946 0.92880 0.92187 0.89461 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.21 101.05 1.03 1.37 16 2 O -0.37 -6.18 8.71 -35.23 -0.31 -6.49 16 3 C 0.13 2.32 0.25 -90.63 -0.02 2.30 16 4 C 0.06 1.13 2.18 -25.70 -0.06 1.08 16 5 H 0.04 0.83 6.65 -51.93 -0.35 0.48 16 6 C -0.14 -2.70 6.19 -24.48 -0.15 -2.85 16 7 C -0.14 -3.02 6.08 -24.78 -0.15 -3.17 16 8 C 0.23 5.64 0.82 -91.05 -0.07 5.56 16 9 C -0.14 -3.43 8.52 37.16 0.32 -3.11 16 10 C -0.53 -14.08 8.23 -34.44 -0.28 -14.37 16 11 H 0.06 1.50 7.48 -52.49 -0.39 1.11 16 12 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 13 N -0.86 -24.03 10.92 55.43 0.61 -23.43 16 14 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 O -0.34 -8.31 8.65 -35.23 -0.30 -8.62 16 19 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 20 C -0.11 -1.82 5.78 -26.73 -0.15 -1.98 16 21 C -0.12 -1.75 5.92 -26.73 -0.16 -1.90 16 22 C -0.11 -1.65 5.78 -26.73 -0.15 -1.80 16 23 C -0.14 -2.36 4.30 -26.74 -0.11 -2.48 16 24 H 0.04 0.56 6.51 -51.93 -0.34 0.22 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.52 6.37 -51.93 -0.33 0.19 16 27 H 0.08 1.56 5.82 -51.93 -0.30 1.26 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.40 7.60 -51.93 -0.39 1.00 16 30 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 2.44 6.01 -51.93 -0.31 2.13 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.07 1.26 6.09 -51.93 -0.32 0.94 16 36 H 0.10 2.14 7.65 -51.93 -0.40 1.74 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 43 H 0.09 1.74 7.80 -51.93 -0.40 1.34 16 44 H 0.05 0.89 6.54 -51.93 -0.34 0.55 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -27.80 324.32 -7.92 -35.72 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.60 Total: 3.16 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -0.19 Total: -21.14 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.61 Total: -23.43 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.61 Total: -15.11 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.80 -7.92 -35.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.800 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds