Wall clock time and date at job start Mon Mar 30 2020 07:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42905 * 113.99822 * 2 1 4 4 C 1.53000 * 109.46825 * 301.98358 * 3 2 1 5 5 H 1.08998 * 110.28099 * 60.70133 * 4 3 2 6 6 C 1.54947 * 110.31011 * 298.61077 * 4 3 2 7 7 C 1.55311 * 100.94359 * 204.64113 * 6 4 3 8 8 C 1.54381 * 102.25083 * 34.13240 * 7 6 4 9 9 C 1.52999 * 109.83052 * 219.12872 * 8 7 6 10 10 C 1.50703 * 109.83338 * 98.24557 * 8 7 6 11 11 H 1.08000 * 119.99215 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00541 * 179.97438 * 10 8 7 13 13 N 1.31519 * 119.99613 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00317 * 180.02562 * 12 10 8 15 15 H 1.48505 * 109.47011 * 60.00325 * 14 12 10 16 16 H 1.48500 * 109.47159 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47042 * 300.00253 * 14 12 10 18 18 O 1.43380 * 107.61403 * 338.56344 * 8 7 6 19 19 C 1.52993 * 109.46980 * 181.98463 * 3 2 1 20 20 C 1.53000 * 109.47256 * 299.99631 * 19 3 2 21 21 C 1.52999 * 109.47079 * 300.00117 * 20 19 3 22 22 C 1.53001 * 109.46766 * 59.99930 * 21 20 19 23 23 C 1.52991 * 109.47275 * 299.99797 * 22 21 20 24 24 H 1.08996 * 109.47137 * 61.93830 * 1 2 3 25 25 H 1.09002 * 109.46802 * 181.93877 * 1 2 3 26 26 H 1.09004 * 109.46965 * 301.93763 * 1 2 3 27 27 H 1.09005 * 111.12427 * 322.55746 * 6 4 3 28 28 H 1.08998 * 111.12764 * 86.71958 * 6 4 3 29 29 H 1.09001 * 110.84330 * 152.32150 * 7 6 4 30 30 H 1.08999 * 110.84900 * 275.94251 * 7 6 4 31 31 H 1.09005 * 109.46699 * 60.00671 * 9 8 7 32 32 H 1.09003 * 109.47311 * 179.97438 * 9 8 7 33 33 H 1.08995 * 109.46977 * 300.00057 * 9 8 7 34 34 H 0.97001 * 119.99975 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47502 * 59.99782 * 19 3 2 36 36 H 1.09005 * 109.46964 * 179.97438 * 19 3 2 37 37 H 1.09003 * 109.47135 * 180.02562 * 20 19 3 38 38 H 1.08996 * 109.46961 * 60.00188 * 20 19 3 39 39 H 1.08996 * 109.47282 * 299.99874 * 21 20 19 40 40 H 1.08997 * 109.46786 * 179.97438 * 21 20 19 41 41 H 1.09001 * 109.46708 * 179.97438 * 22 21 20 42 42 H 1.08996 * 109.47265 * 59.99934 * 22 21 20 43 43 H 1.09005 * 109.47607 * 300.00152 * 23 22 21 44 44 H 1.09000 * 109.47272 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5196 2.0821 -1.2236 5 1 0.4350 2.1865 -1.1949 6 6 1.9566 1.3656 -2.5261 7 6 1.9611 2.5523 -3.5281 8 6 2.4150 3.7300 -2.6390 9 6 1.6333 4.9918 -3.0101 10 6 3.8912 3.9706 -2.8236 11 1 4.4581 3.3524 -3.5039 12 6 4.5178 4.9805 -2.1248 13 7 3.8273 5.7336 -1.2967 14 14 6.3475 5.2792 -2.3541 15 1 6.6214 5.6041 -3.7770 16 1 6.7751 6.4137 -1.4967 17 1 7.1001 4.0576 -1.9715 18 8 2.1436 3.3749 -1.2767 19 6 3.5346 1.1851 -0.0500 20 6 4.0253 0.4085 1.1736 21 6 3.6137 1.1500 2.4470 22 6 2.0893 1.2704 2.4969 23 6 1.5987 2.0470 1.2734 24 1 -0.3633 0.4834 -0.9068 25 1 -0.3633 -1.0271 0.0348 26 1 -0.3633 0.5437 0.8721 27 1 2.9527 0.9352 -2.4225 28 1 1.2314 0.6067 -2.8193 29 1 2.6742 2.3770 -4.3336 30 1 0.9614 2.7287 -3.9249 31 1 0.5680 4.8166 -2.8594 32 1 1.9579 5.8191 -2.3789 33 1 1.8167 5.2384 -4.0558 34 1 4.2681 6.4444 -0.8053 35 1 3.8279 0.6568 -0.9571 36 1 3.9779 2.1809 -0.0504 37 1 5.1114 0.3231 1.1382 38 1 3.5820 -0.5873 1.1736 39 1 4.0570 2.1458 2.4470 40 1 3.9629 0.5965 3.3186 41 1 1.7960 1.7983 3.4043 42 1 1.6460 0.2747 2.4969 43 1 2.0419 3.0428 1.2733 44 1 0.5127 2.1331 1.3092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320059362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:17 Heat of formation + Delta-G solvation = -121.323078 kcal Electronic energy + Delta-G solvation = -23225.254266 eV Core-core repulsion = 20141.404056 eV Total energy + Delta-G solvation = -3083.850211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35226 -39.22196 -36.74767 -34.90946 -32.73769 -32.40188 -31.59731 -30.15679 -27.47427 -27.25310 -26.14041 -23.89062 -22.87862 -21.43397 -21.21081 -20.22930 -18.70016 -17.23014 -16.91411 -16.67189 -16.35611 -16.25311 -15.41157 -15.28222 -14.73849 -14.60144 -14.33300 -14.07692 -13.88871 -13.54715 -13.32424 -13.18877 -13.06558 -12.84268 -12.74905 -12.53982 -12.31359 -12.21546 -12.07274 -11.96804 -11.91174 -11.80544 -11.56590 -11.36221 -11.06839 -10.92536 -10.70986 -10.51447 -10.22036 -9.58253 -7.97436 -6.18871 1.41585 1.42667 1.49063 2.45322 2.84761 3.18146 3.58675 3.70694 3.84538 3.92678 4.07486 4.19532 4.25652 4.34595 4.42954 4.54150 4.58786 4.62925 4.66349 4.71816 4.75737 4.81373 4.85733 4.89454 4.94555 5.00102 5.05273 5.09805 5.12693 5.20818 5.26538 5.31474 5.36918 5.38287 5.41736 5.47357 5.55213 5.68414 5.72189 6.13267 6.36821 6.42135 6.71570 7.17561 7.55532 9.02342 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.008337 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.585617 B = 3357.734466 C = 4092.966770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.377 6.377 3 C 0.138 3.862 4 C 0.049 3.951 5 H 0.049 0.951 6 C -0.130 4.130 7 C -0.140 4.140 8 C 0.217 3.783 9 C -0.135 4.135 10 C -0.541 4.541 11 H 0.050 0.950 12 C 0.040 3.960 13 N -0.886 5.886 14 Si 0.937 3.063 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.275 1.275 18 O -0.367 6.367 19 C -0.094 4.094 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.134 4.134 24 H 0.038 0.962 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.256 0.744 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -10.832 4.602 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.296 6.296 3 C 0.099 3.901 4 C -0.010 4.010 5 H 0.067 0.933 6 C -0.168 4.168 7 C -0.178 4.178 8 C 0.180 3.820 9 C -0.193 4.193 10 C -0.578 4.578 11 H 0.068 0.932 12 C -0.163 4.163 13 N -0.523 5.523 14 Si 0.763 3.237 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.200 1.200 18 O -0.287 6.287 19 C -0.131 4.131 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.172 4.172 24 H 0.057 0.943 25 H 0.123 0.877 26 H 0.066 0.934 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.169 -10.704 4.896 12.855 hybrid contribution 0.736 0.902 -0.529 1.278 sum -4.433 -9.802 4.367 11.611 Atomic orbital electron populations 1.22945 0.80967 1.03648 1.00343 1.87906 1.20355 1.26443 1.94913 1.21192 0.93713 0.82444 0.92773 1.23377 0.95638 0.86386 0.95580 0.93313 1.23084 1.01843 0.97326 0.94505 1.23146 1.00330 0.95688 0.98633 1.19704 0.93065 0.90434 0.78821 1.21912 0.96175 1.01647 0.99574 1.21465 0.94686 1.16075 1.25611 0.93166 1.25583 1.00954 0.95404 0.94326 1.70080 1.36382 1.19409 1.26438 0.85968 0.82053 0.77553 0.78120 1.19644 1.21173 1.20033 1.88710 1.79568 1.31301 1.29089 1.21369 0.92693 1.00370 0.98697 1.21452 1.00135 0.99333 0.93763 1.21521 0.96097 0.99905 0.97942 1.21401 0.95788 1.00522 0.96538 1.21950 1.00631 0.99244 0.95396 0.94342 0.87652 0.93401 0.91399 0.89853 0.91565 0.91697 0.95745 0.92014 0.94192 0.93492 0.92465 0.92881 0.92080 0.90776 0.93865 0.90174 0.91348 0.90804 0.93193 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.21 113.37 1.16 1.56 16 2 O -0.38 -11.48 8.71 -148.98 -1.30 -12.78 16 3 C 0.14 4.86 0.25 -10.80 0.00 4.86 16 4 C 0.05 1.94 2.18 31.26 0.07 2.01 16 5 H 0.05 1.86 6.65 -2.39 -0.02 1.84 16 6 C -0.13 -4.86 6.19 32.05 0.20 -4.66 16 7 C -0.14 -5.76 6.08 31.86 0.19 -5.57 16 8 C 0.22 10.77 0.82 -11.07 -0.01 10.76 16 9 C -0.14 -6.66 8.52 71.98 0.61 -6.05 16 10 C -0.54 -29.48 8.23 25.60 0.21 -29.27 16 11 H 0.05 2.72 7.48 -2.91 -0.02 2.70 16 12 C 0.04 2.19 5.26 84.65 0.45 2.63 16 13 N -0.89 -51.12 10.92 21.45 0.23 -50.88 16 14 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 O -0.37 -18.30 8.65 -148.98 -1.29 -19.59 16 19 C -0.09 -3.54 4.50 30.59 0.14 -3.41 16 20 C -0.11 -3.33 5.78 30.59 0.18 -3.15 16 21 C -0.12 -3.31 5.92 30.59 0.18 -3.13 16 22 C -0.11 -2.89 5.78 30.59 0.18 -2.71 16 23 C -0.13 -4.55 4.30 30.59 0.13 -4.42 16 24 H 0.04 0.94 6.51 -2.39 -0.02 0.92 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.08 6.37 -2.39 -0.02 1.07 16 27 H 0.07 2.67 5.82 -2.38 -0.01 2.66 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.07 2.70 7.60 -2.39 -0.02 2.68 16 30 H 0.06 2.41 7.85 -2.39 -0.02 2.39 16 31 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.06 3.40 6.01 -2.39 -0.01 3.39 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.06 2.20 6.09 -2.39 -0.01 2.19 16 36 H 0.05 2.46 7.65 -2.38 -0.02 2.44 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 2.10 7.68 -2.39 -0.02 2.08 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.86 7.68 -2.39 -0.02 1.84 16 43 H 0.05 2.06 7.80 -2.38 -0.02 2.04 16 44 H 0.06 2.02 6.54 -2.39 -0.02 2.00 16 Total: -1.00 -60.65 324.32 4.31 -56.34 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.96 Total: 21.67 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 3.68 Total: -40.54 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.23 Total: -50.88 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -2.59 Total: -32.36 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.65 4.31 -56.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.979 kcal (2) G-P(sol) polarization free energy of solvation -60.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds