Wall clock time and date at job start Mon Mar 30 2020 07:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99511 * 2 1 4 4 C 1.52998 * 109.47168 * 66.50015 * 3 2 1 5 5 H 1.09004 * 110.27602 * 172.63138 * 4 3 2 6 6 C 1.54953 * 110.39358 * 50.48806 * 4 3 2 7 7 C 1.55533 * 100.95082 * 204.57868 * 6 4 3 8 8 C 1.54383 * 102.14700 * 34.14772 * 7 6 4 9 9 C 1.53001 * 109.82741 * 98.17634 * 8 7 6 10 10 C 1.50697 * 109.83269 * 219.05642 * 8 7 6 11 11 H 1.08008 * 119.99983 * 359.81937 * 10 8 7 12 12 C 1.37880 * 120.00497 * 179.81443 * 10 8 7 13 13 N 1.31508 * 120.00249 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99620 * 0.02562 * 12 10 8 15 15 H 1.48509 * 109.47234 * 89.99687 * 14 12 10 16 16 H 1.48496 * 109.47264 * 209.99630 * 14 12 10 17 17 H 1.48500 * 109.47296 * 329.99740 * 14 12 10 18 18 O 1.43241 * 107.66876 * 338.61848 * 8 7 6 19 19 C 1.53008 * 109.46844 * 186.49768 * 3 2 1 20 20 C 1.52998 * 109.47036 * 60.00166 * 19 3 2 21 21 C 1.53004 * 109.46998 * 59.99863 * 20 19 3 22 22 C 1.52994 * 109.47370 * 299.99902 * 21 20 19 23 23 C 1.52995 * 109.47467 * 306.49847 * 3 2 1 24 24 H 1.09005 * 109.47430 * 295.54096 * 1 2 3 25 25 H 1.09004 * 109.47673 * 55.54317 * 1 2 3 26 26 H 1.08997 * 109.46901 * 175.54500 * 1 2 3 27 27 H 1.08998 * 111.12086 * 322.51547 * 6 4 3 28 28 H 1.08997 * 111.12864 * 86.63184 * 6 4 3 29 29 H 1.09002 * 110.87800 * 276.00206 * 7 6 4 30 30 H 1.08996 * 110.91366 * 152.31346 * 7 6 4 31 31 H 1.09001 * 109.46693 * 180.18539 * 9 8 7 32 32 H 1.08997 * 109.47319 * 60.18585 * 9 8 7 33 33 H 1.09001 * 109.47142 * 300.18103 * 9 8 7 34 34 H 0.96996 * 120.00173 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46945 * 180.02562 * 19 3 2 36 36 H 1.09003 * 109.46988 * 300.00396 * 19 3 2 37 37 H 1.09003 * 109.47200 * 300.00291 * 20 19 3 38 38 H 1.09000 * 109.47045 * 179.97438 * 20 19 3 39 39 H 1.09000 * 109.46969 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47280 * 59.99964 * 21 20 19 41 41 H 1.09003 * 109.47389 * 299.99916 * 22 21 20 42 42 H 1.08998 * 109.47469 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47036 * 60.00049 * 23 3 2 44 44 H 1.09003 * 109.47401 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 1.6920 2.0054 1.3228 5 1 2.2353 2.9479 1.3917 6 6 2.0520 1.0885 2.5190 7 6 1.1068 1.6519 3.6181 8 6 -0.1352 2.0635 2.7987 9 6 -1.1993 0.9673 2.8833 10 6 -0.6925 3.3587 3.3306 11 1 -0.2187 3.8462 4.1699 12 6 -1.8071 3.9215 2.7458 13 7 -2.2931 5.0520 3.2097 14 14 -2.6269 3.0780 1.2947 15 1 -3.6664 2.1400 1.7899 16 1 -3.2577 4.0991 0.4203 17 1 -1.6085 2.3242 0.5202 18 8 0.2787 2.2349 1.4382 19 6 3.5269 1.1886 -0.1632 20 6 3.8450 0.4887 -1.4861 21 6 3.2685 1.3036 -2.6457 22 6 1.7518 1.4206 -2.4824 23 6 1.4337 2.1204 -1.1595 24 1 -0.3634 0.4431 0.9273 25 1 -0.3634 0.5814 -0.8474 26 1 -0.3633 -1.0245 -0.0798 27 1 1.8211 0.0463 2.2984 28 1 3.0980 1.2050 2.8024 29 1 1.5529 2.5177 4.1076 30 1 0.8535 0.8812 4.3460 31 1 -2.0718 1.2622 2.3004 32 1 -1.4896 0.8222 3.9238 33 1 -0.7945 0.0366 2.4858 34 1 -3.0774 5.4477 2.7986 35 1 3.9702 2.1844 -0.1628 36 1 3.9375 0.6080 0.6629 37 1 3.4016 -0.5071 -1.4861 38 1 4.9256 0.4058 -1.6026 39 1 3.4955 0.8053 -3.5881 40 1 3.7118 2.2995 -2.6457 41 1 1.3085 0.4248 -2.4825 42 1 1.3412 2.0015 -3.3083 43 1 0.3531 2.2038 -1.0432 44 1 1.8773 3.1161 -1.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320059375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:21 Heat of formation + Delta-G solvation = -93.835421 kcal Electronic energy + Delta-G solvation = -23452.113017 eV Core-core repulsion = 20369.454760 eV Total energy + Delta-G solvation = -3082.658256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21949 -37.90790 -35.42034 -32.99283 -31.61990 -31.32165 -30.43152 -29.10530 -26.34585 -25.26386 -24.54474 -22.67407 -21.75453 -20.24861 -19.37622 -19.33599 -16.59652 -16.31169 -15.74108 -15.44778 -15.13925 -14.57845 -14.34141 -13.80632 -13.34973 -13.24156 -12.70630 -12.65476 -12.53794 -12.34654 -12.15950 -12.08213 -11.95609 -11.69268 -11.31659 -11.13399 -10.95824 -10.87101 -10.70392 -10.41080 -10.36718 -10.05879 -10.00008 -9.93241 -9.73492 -9.46291 -8.99315 -8.94707 -8.53796 -7.88755 -6.09083 -4.16207 3.34380 3.44696 3.62727 4.19357 4.51006 4.57324 4.91545 4.96395 5.02289 5.23549 5.31584 5.40472 5.47912 5.57230 5.66504 5.70607 5.76589 5.78673 5.87685 5.95843 5.96228 6.01920 6.10908 6.13623 6.17134 6.22878 6.30240 6.31798 6.33489 6.38043 6.39849 6.50276 6.55210 6.61276 6.65224 6.78404 6.80038 6.89756 7.31509 7.69833 7.71479 8.26670 8.49511 8.91992 9.56483 11.02053 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.007869 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.733445 B = 3557.375748 C = 3937.484880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.375 6.375 3 C 0.126 3.874 4 C 0.057 3.943 5 H 0.062 0.938 6 C -0.148 4.148 7 C -0.129 4.129 8 C 0.193 3.807 9 C -0.153 4.153 10 C -0.522 4.522 11 H 0.075 0.925 12 C 0.083 3.917 13 N -0.895 5.895 14 Si 0.880 3.120 15 H -0.290 1.290 16 H -0.305 1.305 17 H -0.222 1.222 18 O -0.365 6.365 19 C -0.102 4.102 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.116 4.116 23 C -0.143 4.143 24 H 0.091 0.909 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.843 -9.506 -8.529 16.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.295 6.295 3 C 0.086 3.914 4 C -0.002 4.002 5 H 0.080 0.920 6 C -0.186 4.186 7 C -0.167 4.167 8 C 0.155 3.845 9 C -0.209 4.209 10 C -0.559 4.559 11 H 0.093 0.907 12 C -0.120 4.120 13 N -0.533 5.533 14 Si 0.710 3.290 15 H -0.218 1.218 16 H -0.233 1.233 17 H -0.145 1.145 18 O -0.286 6.286 19 C -0.139 4.139 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.153 4.153 23 C -0.181 4.181 24 H 0.109 0.891 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.695 -9.487 -8.703 16.117 hybrid contribution -0.743 0.034 -0.487 0.889 sum 8.952 -9.453 -9.190 15.936 Atomic orbital electron populations 1.23453 0.81300 1.00659 1.04037 1.87764 1.20000 1.26727 1.94979 1.21506 0.92808 0.83534 0.93505 1.23324 0.86699 0.96433 0.93711 0.92039 1.23214 0.99208 1.00326 0.95823 1.23047 0.96181 0.99969 0.97456 1.20024 0.90785 0.94449 0.79234 1.22451 0.99587 0.97665 1.01245 1.21157 1.11948 1.06070 1.16716 0.90731 1.25022 0.96386 0.94338 0.96271 1.69924 1.23367 1.18550 1.41438 0.87055 0.79578 0.78807 0.83537 1.21759 1.23288 1.14531 1.88766 1.18766 1.90812 1.30235 1.21471 0.93172 1.01165 0.98132 1.21436 0.99576 0.99908 0.94142 1.21523 0.96031 0.99991 0.97918 1.21482 0.95841 1.00978 0.97042 1.22066 1.02876 0.99056 0.94099 0.89076 0.94328 0.91869 0.90445 0.91823 0.91214 0.91906 0.93593 0.92128 0.94090 0.92693 0.90926 0.91259 0.91218 0.92524 0.92564 0.92358 0.91731 0.92603 0.90175 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.52 101.05 0.96 0.98 16 2 O -0.38 -6.25 7.81 -37.89 -0.30 -6.54 16 3 C 0.13 2.00 0.38 -90.62 -0.03 1.97 16 4 C 0.06 1.04 2.64 -25.70 -0.07 0.98 16 5 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.15 -2.51 5.80 -24.35 -0.14 -2.65 16 7 C -0.13 -2.51 6.09 -24.66 -0.15 -2.66 16 8 C 0.19 4.38 0.73 -91.05 -0.07 4.31 16 9 C -0.15 -3.24 7.10 37.16 0.26 -2.98 16 10 C -0.52 -14.46 8.83 -34.44 -0.30 -14.77 16 11 H 0.07 2.24 7.77 -52.48 -0.41 1.83 16 12 C 0.08 2.41 5.45 -17.82 -0.10 2.31 16 13 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 14 Si 0.88 22.07 23.92 -169.99 -4.07 18.00 16 15 H -0.29 -7.15 6.87 56.52 0.39 -6.76 16 16 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 17 H -0.22 -5.22 4.96 56.52 0.28 -4.93 16 18 O -0.37 -8.01 4.19 -37.89 -0.16 -8.17 16 19 C -0.10 -1.34 4.82 -26.73 -0.13 -1.47 16 20 C -0.11 -1.32 5.78 -26.73 -0.15 -1.48 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 22 C -0.12 -1.54 5.67 -26.73 -0.15 -1.69 16 23 C -0.14 -2.27 4.00 -26.73 -0.11 -2.38 16 24 H 0.09 1.74 1.86 -51.93 -0.10 1.64 16 25 H 0.04 0.66 5.82 -51.93 -0.30 0.36 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.31 7.06 -51.93 -0.37 0.95 16 28 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 30 H 0.06 1.13 7.82 -51.93 -0.41 0.72 16 31 H 0.05 1.03 3.21 -51.93 -0.17 0.87 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.04 0.76 6.51 -51.93 -0.34 0.43 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.89 7.56 -51.93 -0.39 0.49 16 37 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.90 7.31 -51.93 -0.38 0.52 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.46 5.83 -51.93 -0.30 1.16 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -29.80 307.33 -6.90 -36.70 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.45 Total: 3.11 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -0.34 Total: -21.03 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.45 Total: -14.71 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.07 Total: 18.00 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.80 -6.90 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.135 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds