Wall clock time and date at job start Mon Mar 30 2020 07:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99511 * 2 1 4 4 C 1.52998 * 109.47168 * 66.50015 * 3 2 1 5 5 H 1.09004 * 110.27602 * 172.63138 * 4 3 2 6 6 C 1.54953 * 110.39358 * 50.48806 * 4 3 2 7 7 C 1.55533 * 100.95082 * 204.57868 * 6 4 3 8 8 C 1.54383 * 102.14700 * 34.14772 * 7 6 4 9 9 C 1.53001 * 109.82741 * 98.17634 * 8 7 6 10 10 C 1.50697 * 109.83269 * 219.05642 * 8 7 6 11 11 H 1.08008 * 119.99983 * 359.81937 * 10 8 7 12 12 C 1.37880 * 120.00497 * 179.81443 * 10 8 7 13 13 N 1.31508 * 120.00249 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99620 * 0.02562 * 12 10 8 15 15 H 1.48509 * 109.47234 * 89.99687 * 14 12 10 16 16 H 1.48496 * 109.47264 * 209.99630 * 14 12 10 17 17 H 1.48500 * 109.47296 * 329.99740 * 14 12 10 18 18 O 1.43241 * 107.66876 * 338.61848 * 8 7 6 19 19 C 1.53008 * 109.46844 * 186.49768 * 3 2 1 20 20 C 1.52998 * 109.47036 * 60.00166 * 19 3 2 21 21 C 1.53004 * 109.46998 * 59.99863 * 20 19 3 22 22 C 1.52994 * 109.47370 * 299.99902 * 21 20 19 23 23 C 1.52995 * 109.47467 * 306.49847 * 3 2 1 24 24 H 1.09005 * 109.47430 * 295.54096 * 1 2 3 25 25 H 1.09004 * 109.47673 * 55.54317 * 1 2 3 26 26 H 1.08997 * 109.46901 * 175.54500 * 1 2 3 27 27 H 1.08998 * 111.12086 * 322.51547 * 6 4 3 28 28 H 1.08997 * 111.12864 * 86.63184 * 6 4 3 29 29 H 1.09002 * 110.87800 * 276.00206 * 7 6 4 30 30 H 1.08996 * 110.91366 * 152.31346 * 7 6 4 31 31 H 1.09001 * 109.46693 * 180.18539 * 9 8 7 32 32 H 1.08997 * 109.47319 * 60.18585 * 9 8 7 33 33 H 1.09001 * 109.47142 * 300.18103 * 9 8 7 34 34 H 0.96996 * 120.00173 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.46945 * 180.02562 * 19 3 2 36 36 H 1.09003 * 109.46988 * 300.00396 * 19 3 2 37 37 H 1.09003 * 109.47200 * 300.00291 * 20 19 3 38 38 H 1.09000 * 109.47045 * 179.97438 * 20 19 3 39 39 H 1.09000 * 109.46969 * 179.97438 * 21 20 19 40 40 H 1.09003 * 109.47280 * 59.99964 * 21 20 19 41 41 H 1.09003 * 109.47389 * 299.99916 * 22 21 20 42 42 H 1.08998 * 109.47469 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47036 * 60.00049 * 23 3 2 44 44 H 1.09003 * 109.47401 * 180.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 1.6920 2.0054 1.3228 5 1 2.2353 2.9479 1.3917 6 6 2.0520 1.0885 2.5190 7 6 1.1068 1.6519 3.6181 8 6 -0.1352 2.0635 2.7987 9 6 -1.1993 0.9673 2.8833 10 6 -0.6925 3.3587 3.3306 11 1 -0.2187 3.8462 4.1699 12 6 -1.8071 3.9215 2.7458 13 7 -2.2931 5.0520 3.2097 14 14 -2.6269 3.0780 1.2947 15 1 -3.6664 2.1400 1.7899 16 1 -3.2577 4.0991 0.4203 17 1 -1.6085 2.3242 0.5202 18 8 0.2787 2.2349 1.4382 19 6 3.5269 1.1886 -0.1632 20 6 3.8450 0.4887 -1.4861 21 6 3.2685 1.3036 -2.6457 22 6 1.7518 1.4206 -2.4824 23 6 1.4337 2.1204 -1.1595 24 1 -0.3634 0.4431 0.9273 25 1 -0.3634 0.5814 -0.8474 26 1 -0.3633 -1.0245 -0.0798 27 1 1.8211 0.0463 2.2984 28 1 3.0980 1.2050 2.8024 29 1 1.5529 2.5177 4.1076 30 1 0.8535 0.8812 4.3460 31 1 -2.0718 1.2622 2.3004 32 1 -1.4896 0.8222 3.9238 33 1 -0.7945 0.0366 2.4858 34 1 -3.0774 5.4477 2.7986 35 1 3.9702 2.1844 -0.1628 36 1 3.9375 0.6080 0.6629 37 1 3.4016 -0.5071 -1.4861 38 1 4.9256 0.4058 -1.6026 39 1 3.4955 0.8053 -3.5881 40 1 3.7118 2.2995 -2.6457 41 1 1.3085 0.4248 -2.4825 42 1 1.3412 2.0015 -3.3083 43 1 0.3531 2.2038 -1.0432 44 1 1.8773 3.1161 -1.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320059375.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:20 Heat of formation + Delta-G solvation = -111.789439 kcal Electronic energy + Delta-G solvation = -23452.891561 eV Core-core repulsion = 20369.454760 eV Total energy + Delta-G solvation = -3083.436801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58608 -39.36145 -36.57364 -34.95601 -33.10307 -33.05314 -31.57244 -30.48709 -27.87943 -26.83914 -26.23421 -23.83059 -23.02825 -21.52790 -21.11758 -20.51760 -18.65312 -17.72414 -17.25187 -16.81184 -16.45860 -16.13049 -15.76927 -15.16471 -14.68068 -14.54886 -14.43109 -14.29261 -14.11541 -13.84422 -13.70403 -13.31089 -13.08516 -12.95254 -12.84066 -12.68417 -12.35004 -12.20293 -12.01001 -11.94823 -11.92628 -11.64668 -11.38492 -11.29070 -11.12655 -10.92440 -10.79243 -10.71208 -10.34288 -9.51799 -8.33080 -6.42839 1.30721 1.39096 1.63011 2.39361 2.92344 2.96590 3.32821 3.73608 3.85481 3.92600 3.98292 4.15928 4.28859 4.34063 4.39701 4.47212 4.56012 4.61442 4.64622 4.67051 4.69687 4.72259 4.75700 4.81204 4.84634 4.92654 4.99205 5.03061 5.11141 5.16966 5.20404 5.26892 5.30927 5.35504 5.36141 5.40002 5.48256 5.60890 5.64379 5.69462 6.20220 6.42036 6.56270 6.77970 7.34417 8.81812 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.007869 C = 0.007109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.733445 B = 3557.375748 C = 3937.484880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.372 6.372 3 C 0.130 3.870 4 C 0.045 3.955 5 H 0.051 0.949 6 C -0.131 4.131 7 C -0.129 4.129 8 C 0.189 3.811 9 C -0.149 4.149 10 C -0.523 4.523 11 H 0.033 0.967 12 C 0.028 3.972 13 N -0.946 5.946 14 Si 0.938 3.062 15 H -0.281 1.281 16 H -0.317 1.317 17 H -0.199 1.199 18 O -0.379 6.379 19 C -0.101 4.101 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.112 4.112 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.263 0.737 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.685 -12.131 -10.258 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 O -0.292 6.292 3 C 0.090 3.910 4 C -0.013 4.013 5 H 0.069 0.931 6 C -0.168 4.168 7 C -0.167 4.167 8 C 0.151 3.849 9 C -0.206 4.206 10 C -0.561 4.561 11 H 0.052 0.948 12 C -0.170 4.170 13 N -0.587 5.587 14 Si 0.766 3.234 15 H -0.208 1.208 16 H -0.247 1.247 17 H -0.122 1.122 18 O -0.300 6.300 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.182 4.182 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.561 -12.137 -10.430 19.742 hybrid contribution -1.243 0.915 0.120 1.548 sum 10.318 -11.222 -10.310 18.404 Atomic orbital electron populations 1.23425 0.81598 1.01831 1.02740 1.87777 1.19710 1.26864 1.94798 1.21557 0.94680 0.83012 0.91754 1.23607 0.84665 0.96841 0.96164 0.93112 1.23140 1.00027 1.00036 0.93630 1.22997 0.95434 1.00047 0.98231 1.19931 0.92523 0.92311 0.80138 1.22372 0.98462 0.98330 1.01418 1.21532 1.11419 1.07812 1.15314 0.94847 1.25831 0.97333 0.94866 0.99004 1.70070 1.24433 1.20644 1.43509 0.86161 0.79104 0.77711 0.80422 1.20786 1.24655 1.12204 1.88681 1.21070 1.91210 1.29021 1.21523 0.90712 1.02113 0.99502 1.21419 1.00989 0.99108 0.93101 1.21527 0.94302 1.00612 0.98787 1.21450 0.97529 1.00294 0.95631 1.22052 1.00953 0.99415 0.95814 0.90948 0.94902 0.89620 0.89563 0.89194 0.92875 0.90115 0.94968 0.91898 0.91022 0.92842 0.90133 0.90505 0.91985 0.90231 0.90782 0.91787 0.92291 0.91944 0.93049 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.52 113.37 1.08 1.07 16 2 O -0.37 -11.23 7.81 -146.44 -1.14 -12.37 16 3 C 0.13 3.80 0.38 -10.79 0.00 3.80 16 4 C 0.05 1.59 2.64 31.26 0.08 1.67 16 5 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 6 C -0.13 -4.08 5.80 32.13 0.19 -3.89 16 7 C -0.13 -4.88 6.09 31.94 0.19 -4.69 16 8 C 0.19 8.48 0.73 -11.07 -0.01 8.47 16 9 C -0.15 -6.08 7.10 71.98 0.51 -5.57 16 10 C -0.52 -29.89 8.83 25.60 0.23 -29.66 16 11 H 0.03 2.12 7.77 -2.91 -0.02 2.10 16 12 C 0.03 1.66 5.45 84.66 0.46 2.12 16 13 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 14 Si 0.94 46.53 23.92 68.60 1.64 48.17 16 15 H -0.28 -13.38 6.87 99.48 0.68 -12.69 16 16 H -0.32 -16.24 7.11 99.48 0.71 -15.53 16 17 H -0.20 -9.10 4.96 99.48 0.49 -8.61 16 18 O -0.38 -16.29 4.19 -146.44 -0.61 -16.90 16 19 C -0.10 -2.30 4.82 30.60 0.15 -2.16 16 20 C -0.11 -2.11 5.78 30.59 0.18 -1.93 16 21 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 22 C -0.11 -2.68 5.67 30.59 0.17 -2.51 16 23 C -0.14 -4.35 4.00 30.59 0.12 -4.23 16 24 H 0.07 2.57 1.86 -2.38 0.00 2.56 16 25 H 0.03 1.06 5.82 -2.38 -0.01 1.04 16 26 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.09 2.58 7.06 -2.39 -0.02 2.56 16 28 H 0.09 2.35 8.10 -2.39 -0.02 2.33 16 29 H 0.05 2.15 7.66 -2.39 -0.02 2.13 16 30 H 0.08 2.73 7.82 -2.39 -0.02 2.71 16 31 H 0.03 1.39 3.21 -2.39 -0.01 1.38 16 32 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.47 6.51 -2.39 -0.02 2.45 16 34 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 37 H 0.06 1.33 7.68 -2.39 -0.02 1.31 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.49 7.31 -2.39 -0.02 1.47 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.83 5.83 -2.39 -0.01 1.82 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -66.39 307.33 4.45 -61.94 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.73 Total: 18.94 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 3.53 Total: -39.53 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.30 Total: -60.25 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.76 Total: -29.27 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.64 Total: 48.17 kcal Total: -66.39 4.45 -61.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320059375.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.846 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds