Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.47203 * 109.46987 * 239.99304 * 2 1 3 5 5 N 2.60802 * 109.47168 * 239.99432 * 2 1 3 6 6 C 1.53000 * 109.46389 * 119.99817 * 2 1 3 7 7 N 1.46912 * 109.46531 * 180.99288 * 6 2 1 8 8 C 1.46903 * 110.99640 * 196.02924 * 7 6 2 9 9 C 1.52997 * 109.47075 * 163.54973 * 8 7 6 10 10 C 1.52996 * 109.47363 * 185.88390 * 9 8 7 11 11 S 1.80995 * 109.47311 * 179.97438 * 10 9 8 12 12 C 1.76201 * 100.00211 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99993 * 0.02562 * 12 11 10 14 14 C 1.38792 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.31636 * 119.99965 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00119 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46955 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47183 * 120.00558 * 16 14 12 19 19 H 1.48505 * 109.47080 * 240.00339 * 16 14 12 20 20 C 1.46899 * 111.00180 * 72.07419 * 7 6 2 21 21 C 1.52991 * 117.49738 * 265.26780 * 20 7 6 22 22 C 1.52996 * 117.49804 * 196.60803 * 20 7 6 23 23 H 1.08999 * 109.47314 * 304.82074 * 1 2 3 24 24 H 1.09005 * 109.46789 * 64.81687 * 1 2 3 25 25 H 1.08998 * 109.47707 * 184.81588 * 1 2 3 26 26 H 1.08990 * 109.47550 * 60.99538 * 6 2 1 27 27 H 1.08997 * 109.47038 * 300.98207 * 6 2 1 28 28 H 1.08999 * 109.47242 * 43.54750 * 8 7 6 29 29 H 1.09004 * 109.46949 * 283.54623 * 8 7 6 30 30 H 1.09001 * 109.47112 * 65.88306 * 9 8 7 31 31 H 1.09005 * 109.46950 * 305.88355 * 9 8 7 32 32 H 1.09001 * 109.47414 * 300.00242 * 10 9 8 33 33 H 1.09001 * 109.47076 * 59.99894 * 10 9 8 34 34 H 0.97000 * 119.99719 * 179.97438 * 15 14 12 35 35 H 1.08995 * 115.54806 * 50.93796 * 20 7 6 36 36 H 1.09005 * 117.50323 * 359.97438 * 21 20 7 37 37 H 1.08999 * 117.50375 * 145.01804 * 21 20 7 38 38 H 1.08999 * 117.49715 * 214.98297 * 22 20 7 39 39 H 1.09005 * 117.49931 * 359.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6941 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0399 -0.7212 1.2493 7 7 3.5088 -0.7005 1.2614 8 6 4.0413 -1.6855 2.2123 9 6 5.5217 -1.9324 1.9153 10 6 6.0393 -3.0626 2.8073 11 16 7.7904 -3.3552 2.4555 12 6 8.1157 -4.6645 3.5888 13 1 7.3268 -5.0352 4.2266 14 6 9.3854 -5.2204 3.6612 15 7 10.3468 -4.7691 2.8836 16 14 9.7300 -6.6090 4.8623 17 1 8.4913 -6.9308 5.6155 18 1 10.1801 -7.8102 4.1142 19 1 10.7924 -6.1902 5.8116 20 6 4.0139 0.6462 1.5602 21 6 4.3686 1.5466 0.3753 22 6 5.4799 0.9391 1.2350 23 1 -0.3634 0.5868 0.8436 24 1 -0.3633 0.4373 -0.9300 25 1 -0.3634 -1.0240 0.0863 26 1 1.6912 -1.7538 1.2405 27 1 1.6621 -0.2176 2.1391 28 1 3.4900 -2.6207 2.1136 29 1 3.9330 -1.3053 3.2281 30 1 6.0889 -1.0233 2.1150 31 1 5.6405 -2.2123 0.8686 32 1 5.9204 -2.7828 3.8541 33 1 5.4721 -3.9718 2.6076 34 1 11.2342 -5.1573 2.9345 35 1 3.5898 1.1218 2.4445 36 1 4.2277 1.1396 -0.6261 37 1 4.1783 2.6147 0.4800 38 1 6.0202 1.6077 1.9051 39 1 6.0697 0.1324 0.7997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336677291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = 39.424904 kcal Electronic energy + Delta-G solvation = -17789.756219 eV Core-core repulsion = 15052.089091 eV Total energy + Delta-G solvation = -2737.667128 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.26555 -36.91983 -34.86469 -34.08983 -32.41107 -31.69673 -26.84364 -25.58097 -24.50019 -23.34454 -22.49969 -21.16701 -20.42734 -17.69172 -17.39407 -16.15735 -15.69487 -15.41538 -14.78670 -14.72647 -14.17439 -14.08564 -13.86531 -13.30967 -13.11862 -12.83970 -12.69929 -12.31574 -12.22833 -12.00050 -11.82400 -11.58599 -11.44446 -11.21882 -11.12511 -11.05840 -10.76350 -10.60725 -10.57631 -10.12872 -9.92749 -9.49158 -9.04188 -8.47582 -8.25570 -6.49105 -6.20404 -3.90058 2.83014 2.85285 3.22240 3.23201 3.31185 3.46408 3.70849 3.74057 3.90035 4.25068 4.50624 4.79333 4.82606 4.90250 4.97539 5.06937 5.15300 5.15818 5.22676 5.33568 5.37650 5.46602 5.55630 5.59619 5.63019 5.68488 5.74928 5.80065 5.92385 6.03150 6.10487 6.21984 6.41595 6.63944 6.76955 6.97670 7.05494 7.63086 7.64551 8.39240 9.25964 10.87832 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.003485 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.217718 B = 8032.660560 C = 8264.052944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.008 3.992 3 H 0.113 0.887 4 C 0.221 3.779 5 N -0.437 5.437 6 C 0.064 3.936 7 N -0.516 5.516 8 C 0.066 3.934 9 C -0.099 4.099 10 C -0.112 4.112 11 S -0.132 6.132 12 C -0.515 4.515 13 H 0.072 0.928 14 C 0.070 3.930 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.001 3.999 21 C -0.172 4.172 22 C -0.166 4.166 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.117 13.476 -1.409 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 H 0.131 0.869 4 C -0.097 4.097 5 N -0.112 5.112 6 C -0.066 4.066 7 N -0.240 5.240 8 C -0.062 4.062 9 C -0.138 4.138 10 C -0.262 4.262 11 S 0.096 5.904 12 C -0.663 4.663 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.107 4.107 21 C -0.209 4.209 22 C -0.203 4.203 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.486 13.011 -4.064 22.171 hybrid contribution -0.878 -1.123 2.825 3.164 sum -18.364 11.888 -1.239 21.911 Atomic orbital electron populations 1.21795 0.92007 1.03355 1.03252 1.18922 0.96060 0.99482 0.86918 0.86876 1.28796 0.93093 0.93835 0.93967 1.81204 1.08630 1.09019 1.12384 1.22147 0.88075 1.01187 0.95143 1.61747 1.06612 1.04286 1.51378 1.22148 0.96888 0.94269 0.92921 1.21487 0.93317 0.98643 1.00332 1.23239 1.02275 0.99689 1.00960 1.84634 1.02865 1.48038 1.54881 1.22735 0.98842 1.20577 1.24179 0.90978 1.25016 0.95206 0.97345 0.96279 1.70039 1.02238 1.40993 1.37265 0.86122 0.78374 0.80886 0.80195 1.19626 1.20586 1.20589 1.22403 0.99569 0.90615 0.98134 1.23076 1.03922 0.97770 0.96176 1.23240 0.90844 1.03355 1.02898 0.90625 0.91564 0.91625 0.89898 0.92563 0.90971 0.94445 0.90627 0.91085 0.92392 0.92357 0.92396 0.89488 0.88643 0.88897 0.88569 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.15 37.16 0.34 -0.32 16 2 C 0.01 0.06 2.65 -93.40 -0.25 -0.19 16 3 H 0.11 0.68 6.53 -51.93 -0.34 0.34 16 4 C 0.22 2.51 14.25 -20.76 -0.30 2.21 16 5 N -0.44 -6.50 18.54 42.15 0.78 -5.72 16 6 C 0.06 0.51 4.38 -3.82 -0.02 0.49 16 7 N -0.52 -5.68 4.14 -226.65 -0.94 -6.62 16 8 C 0.07 0.85 4.98 -3.82 -0.02 0.83 16 9 C -0.10 -1.64 4.30 -26.73 -0.12 -1.75 16 10 C -0.11 -2.29 5.67 37.16 0.21 -2.08 16 11 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 12 C -0.52 -14.97 9.50 30.94 0.29 -14.68 16 13 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 16 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.00 0.01 4.40 -67.72 -0.30 -0.28 16 21 C -0.17 -1.60 9.10 -26.70 -0.24 -1.85 16 22 C -0.17 -1.87 8.59 -26.70 -0.23 -2.10 16 23 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.67 7.72 -51.93 -0.40 0.27 16 27 H 0.06 0.34 8.05 -51.93 -0.42 -0.07 16 28 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 29 H 0.04 0.46 8.05 -51.93 -0.42 0.04 16 30 H 0.08 1.24 5.28 -51.93 -0.27 0.97 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 33 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 1.53 6.22 -51.93 -0.32 1.21 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -33.41 337.77 -8.72 -42.13 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.35 Total: -2.43 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.72 Total: -17.79 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.58 Total: -37.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.41 -8.72 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.554 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds