Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47099 * 2 1 4 4 C 1.47203 * 109.46987 * 239.99304 * 2 1 3 5 5 N 2.60802 * 109.47168 * 239.99432 * 2 1 3 6 6 C 1.53000 * 109.46389 * 119.99817 * 2 1 3 7 7 N 1.46912 * 109.46531 * 180.99288 * 6 2 1 8 8 C 1.46903 * 110.99640 * 196.02924 * 7 6 2 9 9 C 1.52997 * 109.47075 * 163.54973 * 8 7 6 10 10 C 1.52996 * 109.47363 * 185.88390 * 9 8 7 11 11 S 1.80995 * 109.47311 * 179.97438 * 10 9 8 12 12 C 1.76201 * 100.00211 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99993 * 0.02562 * 12 11 10 14 14 C 1.38792 * 120.00322 * 179.97438 * 12 11 10 15 15 N 1.31636 * 119.99965 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00119 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46955 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47183 * 120.00558 * 16 14 12 19 19 H 1.48505 * 109.47080 * 240.00339 * 16 14 12 20 20 C 1.46899 * 111.00180 * 72.07419 * 7 6 2 21 21 C 1.52991 * 117.49738 * 265.26780 * 20 7 6 22 22 C 1.52996 * 117.49804 * 196.60803 * 20 7 6 23 23 H 1.08999 * 109.47314 * 304.82074 * 1 2 3 24 24 H 1.09005 * 109.46789 * 64.81687 * 1 2 3 25 25 H 1.08998 * 109.47707 * 184.81588 * 1 2 3 26 26 H 1.08990 * 109.47550 * 60.99538 * 6 2 1 27 27 H 1.08997 * 109.47038 * 300.98207 * 6 2 1 28 28 H 1.08999 * 109.47242 * 43.54750 * 8 7 6 29 29 H 1.09004 * 109.46949 * 283.54623 * 8 7 6 30 30 H 1.09001 * 109.47112 * 65.88306 * 9 8 7 31 31 H 1.09005 * 109.46950 * 305.88355 * 9 8 7 32 32 H 1.09001 * 109.47414 * 300.00242 * 10 9 8 33 33 H 1.09001 * 109.47076 * 59.99894 * 10 9 8 34 34 H 0.97000 * 119.99719 * 179.97438 * 15 14 12 35 35 H 1.08995 * 115.54806 * 50.93796 * 20 7 6 36 36 H 1.09005 * 117.50323 * 359.97438 * 21 20 7 37 37 H 1.08999 * 117.50375 * 145.01804 * 21 20 7 38 38 H 1.08999 * 117.49715 * 214.98297 * 22 20 7 39 39 H 1.09005 * 117.49931 * 359.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6941 -1.2018 5 7 2.3994 -1.2296 -2.1293 6 6 2.0399 -0.7212 1.2493 7 7 3.5088 -0.7005 1.2614 8 6 4.0413 -1.6855 2.2123 9 6 5.5217 -1.9324 1.9153 10 6 6.0393 -3.0626 2.8073 11 16 7.7904 -3.3552 2.4555 12 6 8.1157 -4.6645 3.5888 13 1 7.3268 -5.0352 4.2266 14 6 9.3854 -5.2204 3.6612 15 7 10.3468 -4.7691 2.8836 16 14 9.7300 -6.6090 4.8623 17 1 8.4913 -6.9308 5.6155 18 1 10.1801 -7.8102 4.1142 19 1 10.7924 -6.1902 5.8116 20 6 4.0139 0.6462 1.5602 21 6 4.3686 1.5466 0.3753 22 6 5.4799 0.9391 1.2350 23 1 -0.3634 0.5868 0.8436 24 1 -0.3633 0.4373 -0.9300 25 1 -0.3634 -1.0240 0.0863 26 1 1.6912 -1.7538 1.2405 27 1 1.6621 -0.2176 2.1391 28 1 3.4900 -2.6207 2.1136 29 1 3.9330 -1.3053 3.2281 30 1 6.0889 -1.0233 2.1150 31 1 5.6405 -2.2123 0.8686 32 1 5.9204 -2.7828 3.8541 33 1 5.4721 -3.9718 2.6076 34 1 11.2342 -5.1573 2.9345 35 1 3.5898 1.1218 2.4445 36 1 4.2277 1.1396 -0.6261 37 1 4.1783 2.6147 0.4800 38 1 6.0202 1.6077 1.9051 39 1 6.0697 0.1324 0.7997 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336677291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = 18.949904 kcal Electronic energy + Delta-G solvation = -17790.644081 eV Core-core repulsion = 15052.089091 eV Total energy + Delta-G solvation = -2738.554990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07817 -37.79760 -35.74633 -35.12896 -34.60677 -32.70348 -28.06886 -27.41966 -25.49410 -24.01457 -23.36870 -22.39598 -21.29706 -19.56554 -18.35734 -16.92677 -16.90743 -16.70744 -16.54186 -15.77339 -15.47765 -15.20948 -14.82256 -14.73189 -14.17382 -13.75186 -13.68901 -13.53438 -13.31461 -13.05621 -12.96399 -12.90006 -12.60054 -12.52282 -12.41371 -12.16923 -12.10287 -11.92034 -11.64951 -11.37186 -11.17041 -10.93181 -10.87134 -10.30775 -9.26893 -8.67577 -8.38193 -6.14677 1.30506 1.37544 1.48836 1.74677 1.96242 2.00051 2.27743 2.74772 2.95540 2.95972 3.18422 3.32401 3.85903 4.03647 4.07386 4.15459 4.19316 4.30855 4.32731 4.43861 4.46288 4.59142 4.66631 4.81380 4.83019 4.85806 4.89415 4.90613 5.02560 5.15467 5.19327 5.24925 5.33560 5.38642 5.39023 5.42522 6.07903 6.17357 6.26380 6.79732 7.03830 8.71570 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030754 B = 0.003485 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.217718 B = 8032.660560 C = 8264.052944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.012 3.988 3 H 0.131 0.869 4 C 0.245 3.755 5 N -0.511 5.511 6 C 0.063 3.937 7 N -0.538 5.538 8 C 0.078 3.922 9 C -0.087 4.087 10 C -0.086 4.086 11 S -0.204 6.204 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.013 3.987 15 N -0.909 5.909 16 Si 0.996 3.004 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.270 1.270 20 C 0.011 3.989 21 C -0.154 4.154 22 C -0.192 4.192 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.271 0.729 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.517 14.415 0.606 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.010 4.010 3 H 0.149 0.851 4 C -0.072 4.072 5 N -0.188 5.188 6 C -0.066 4.066 7 N -0.262 5.262 8 C -0.051 4.051 9 C -0.126 4.126 10 C -0.235 4.235 11 S 0.025 5.975 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.192 4.192 15 N -0.545 5.545 16 Si 0.818 3.182 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.098 4.098 21 C -0.192 4.192 22 C -0.229 4.229 23 H 0.122 0.878 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.906 13.963 -2.058 24.402 hybrid contribution -0.181 -1.337 2.157 2.544 sum -20.087 12.627 0.099 23.726 Atomic orbital electron populations 1.21812 0.89559 1.03879 1.04621 1.19259 0.97806 0.99497 0.84397 0.85121 1.29751 0.91207 0.92349 0.93883 1.81222 1.11159 1.11504 1.14871 1.22272 0.85800 1.01854 0.96643 1.61630 1.08867 1.04540 1.51200 1.21904 0.93730 0.95353 0.94116 1.21375 0.96418 0.96908 0.97859 1.23166 0.97120 1.01080 1.02164 1.84706 1.09085 1.48164 1.55587 1.23073 0.99452 1.21286 1.24595 0.90876 1.26107 0.94763 1.00116 0.98170 1.70178 1.02822 1.42567 1.38972 0.84941 0.78631 0.77040 0.77593 1.18490 1.19820 1.19517 1.22537 0.97900 0.90192 0.99129 1.23071 1.01934 0.99146 0.95001 1.23161 0.91793 1.03425 1.04542 0.87779 0.91424 0.91853 0.90088 0.89213 0.90721 0.92872 0.90656 0.93515 0.91574 0.92450 0.92003 0.86895 0.90406 0.86012 0.87747 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.15 71.98 0.66 -0.10 16 2 C 0.01 0.14 2.65 -12.60 -0.03 0.10 16 3 H 0.13 1.06 6.53 -2.39 -0.02 1.04 16 4 C 0.24 5.37 14.25 89.44 1.27 6.64 16 5 N -0.51 -15.58 18.54 20.01 0.37 -15.20 16 6 C 0.06 0.78 4.38 86.30 0.38 1.15 16 7 N -0.54 -10.71 4.14 -871.00 -3.61 -14.32 16 8 C 0.08 1.86 4.98 86.30 0.43 2.29 16 9 C -0.09 -2.89 4.30 30.59 0.13 -2.76 16 10 C -0.09 -3.53 5.67 71.98 0.41 -3.12 16 11 S -0.20 -11.24 21.44 -56.49 -1.21 -12.45 16 12 C -0.54 -31.68 9.50 67.95 0.65 -31.03 16 13 H 0.07 4.15 7.80 -2.91 -0.02 4.13 16 14 C 0.01 0.76 5.49 84.85 0.47 1.22 16 15 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 16 Si 1.00 44.65 29.55 68.60 2.03 46.68 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 C 0.01 0.18 4.40 44.91 0.20 0.38 16 21 C -0.15 -2.56 9.10 30.61 0.28 -2.29 16 22 C -0.19 -4.21 8.59 30.62 0.26 -3.95 16 23 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 26 H 0.08 1.07 7.72 -2.39 -0.02 1.05 16 27 H 0.09 0.60 8.05 -2.39 -0.02 0.58 16 28 H 0.07 1.75 7.71 -2.39 -0.02 1.74 16 29 H 0.05 1.12 8.05 -2.39 -0.02 1.11 16 30 H 0.07 2.53 5.28 -2.39 -0.01 2.51 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 2.35 8.14 -2.40 -0.02 2.33 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.23 6.22 -2.38 -0.01 2.22 16 Total: -1.00 -76.10 337.77 3.98 -72.13 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.01 Total: 10.45 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 5.10 Total: -31.46 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.95 Total: -85.34 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -11.24 SS G_CDS: -1.21 Total: -12.45 kcal Total: -76.10 3.98 -72.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.075 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds