Wall clock time and date at job start Mon Mar 30 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46822 * 2 1 4 4 C 1.47193 * 109.47132 * 120.00351 * 2 1 3 5 5 N 2.60794 * 109.47310 * 120.00318 * 2 1 3 6 6 C 1.53002 * 109.46971 * 240.00320 * 2 1 3 7 7 N 1.46900 * 109.46981 * 64.99569 * 6 2 1 8 8 C 1.46896 * 111.00054 * 189.99967 * 7 6 2 9 9 C 1.53007 * 109.47287 * 163.45625 * 8 7 6 10 10 C 1.53001 * 109.47139 * 185.90332 * 9 8 7 11 11 S 1.80999 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.76205 * 99.99914 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99983 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99875 * 179.97438 * 12 11 10 15 15 N 1.31628 * 120.00007 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00075 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46956 * 60.00282 * 16 14 12 18 18 H 1.48500 * 109.47362 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47229 * 300.00516 * 16 14 12 20 20 C 1.46910 * 110.99991 * 66.04893 * 7 6 2 21 21 C 1.52997 * 117.49625 * 263.86012 * 20 7 6 22 22 C 1.52996 * 60.00008 * 252.51053 * 21 20 7 23 23 H 1.09004 * 109.46842 * 299.99467 * 1 2 3 24 24 H 1.08999 * 109.47412 * 59.99631 * 1 2 3 25 25 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47176 * 184.99882 * 6 2 1 27 27 H 1.09002 * 109.47266 * 305.00420 * 6 2 1 28 28 H 1.08999 * 109.47177 * 283.45517 * 8 7 6 29 29 H 1.08996 * 109.47035 * 43.45800 * 8 7 6 30 30 H 1.08994 * 109.46772 * 305.90129 * 9 8 7 31 31 H 1.08997 * 109.46694 * 65.90383 * 9 8 7 32 32 H 1.09003 * 109.46923 * 299.99600 * 10 9 8 33 33 H 1.08993 * 109.47344 * 59.99923 * 10 9 8 34 34 H 0.97002 * 119.99895 * 180.02562 * 15 14 12 35 35 H 1.08996 * 115.54651 * 49.56339 * 20 7 6 36 36 H 1.09007 * 117.49859 * 359.97438 * 21 20 7 37 37 H 1.08995 * 117.49916 * 145.01768 * 21 20 7 38 38 H 1.09002 * 117.49618 * 252.51404 * 22 21 20 39 39 H 1.09001 * 117.50127 * 107.49288 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3995 -1.2295 2.1293 6 6 2.0401 -0.7212 -1.2493 7 7 1.6513 0.0375 -2.4456 8 6 1.9123 -0.7355 -3.6672 9 6 1.1391 -0.1201 -4.8353 10 6 1.2923 -1.0074 -6.0722 11 16 0.3783 -0.2789 -7.4542 12 6 0.7185 -1.4697 -8.7077 13 1 1.3346 -2.3280 -8.4841 14 6 0.1948 -1.3044 -9.9823 15 7 -0.5556 -0.2580 -10.2550 16 14 0.5561 -2.5664 -11.3114 17 1 0.0477 -3.8946 -10.8840 18 1 -0.1151 -2.1626 -12.5730 19 1 2.0223 -2.6456 -11.5334 20 6 2.3340 1.3376 -2.4895 21 6 1.5759 2.5521 -1.9501 22 6 1.7881 2.3900 -3.4565 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 3.1263 -0.7994 -1.2057 27 1 1.6054 -1.7197 -1.2953 28 1 2.9796 -0.7168 -3.8879 29 1 1.5896 -1.7663 -3.5207 30 1 0.0843 -0.0427 -4.5721 31 1 1.5341 0.8730 -5.0493 32 1 2.3473 -1.0848 -6.3354 33 1 0.8975 -2.0005 -5.8582 34 1 -0.9220 -0.1427 -11.1457 35 1 3.4125 1.3076 -2.3346 36 1 0.5704 2.3866 -1.5631 37 1 2.1556 3.3215 -1.4401 38 1 2.5075 3.0527 -3.9377 39 1 0.9224 2.1178 -4.0604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336677298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:45 Heat of formation + Delta-G solvation = 40.570444 kcal Electronic energy + Delta-G solvation = -17718.920547 eV Core-core repulsion = 14981.303094 eV Total energy + Delta-G solvation = -2737.617453 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.35780 -37.16853 -34.89416 -34.14807 -32.42826 -31.55517 -26.84701 -25.65540 -24.77421 -23.28138 -22.50089 -21.13409 -20.26993 -17.66954 -17.44419 -16.20470 -16.03102 -15.05430 -14.87828 -14.78812 -14.39010 -14.03064 -13.93593 -13.36972 -13.16232 -13.00415 -12.78584 -12.35741 -12.27152 -12.02608 -11.73768 -11.54320 -11.43939 -11.23514 -11.14063 -11.04268 -10.80314 -10.62728 -10.60124 -10.15085 -9.93277 -9.52735 -9.04430 -8.50761 -8.29148 -6.51355 -6.22131 -3.91981 2.46239 2.53078 3.20997 3.23390 3.27897 3.35777 3.63618 3.70735 3.97739 4.23609 4.48323 4.66223 4.86996 4.88875 5.00595 5.11221 5.11569 5.14034 5.31467 5.39966 5.44859 5.56004 5.59613 5.60908 5.65679 5.73800 5.77779 5.89464 5.97968 6.05980 6.10933 6.19681 6.39606 6.60900 6.73939 6.93333 7.00267 7.30059 7.60929 8.37059 9.24249 10.85963 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003295 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.568376 B = 8496.304233 C = 8936.294286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 H 0.117 0.883 4 C 0.213 3.787 5 N -0.442 5.442 6 C 0.066 3.934 7 N -0.506 5.506 8 C 0.065 3.935 9 C -0.099 4.099 10 C -0.114 4.114 11 S -0.131 6.131 12 C -0.517 4.517 13 H 0.071 0.929 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.917 3.083 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.004 4.004 21 C -0.172 4.172 22 C -0.167 4.167 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.268 0.732 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 3.968 17.209 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.016 4.016 3 H 0.134 0.866 4 C -0.105 4.105 5 N -0.117 5.117 6 C -0.063 4.063 7 N -0.230 5.230 8 C -0.064 4.064 9 C -0.138 4.138 10 C -0.263 4.263 11 S 0.097 5.903 12 C -0.665 4.665 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.506 5.506 16 Si 0.743 3.257 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.112 4.112 21 C -0.209 4.209 22 C -0.204 4.204 23 H 0.075 0.925 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.310 4.281 18.431 19.210 hybrid contribution 1.776 -1.932 -1.241 2.903 sum 5.085 2.350 17.191 18.080 Atomic orbital electron populations 1.21755 0.91094 1.03242 1.03476 1.18905 0.98088 0.99164 0.85401 0.86563 1.29310 0.93057 0.93546 0.94582 1.81220 1.09258 1.09536 1.11732 1.22023 0.98518 0.97268 0.88484 1.61712 1.56947 1.02595 1.01733 1.22162 0.98548 0.96954 0.88724 1.21514 1.01109 0.99427 0.91725 1.23251 1.02755 1.01452 0.98843 1.84584 1.66358 1.36030 1.03315 1.22652 1.37107 1.10121 0.96610 0.91084 1.25000 0.94644 0.96162 0.97942 1.70009 1.31631 1.27270 1.21651 0.86244 0.78639 0.80830 0.79940 1.19952 1.20829 1.19977 1.22421 0.94923 0.86573 1.07307 1.23129 1.02048 0.98405 0.97352 1.23272 1.04207 1.00204 0.92722 0.92458 0.89073 0.92051 0.94052 0.89630 0.94552 0.90814 0.90824 0.90526 0.92456 0.92299 0.92273 0.89738 0.87930 0.89080 0.88714 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.04 37.16 0.34 -0.57 16 2 C 0.01 0.04 2.58 -93.40 -0.24 -0.20 16 3 H 0.12 0.70 6.18 -51.93 -0.32 0.38 16 4 C 0.21 2.03 14.64 -20.76 -0.30 1.73 16 5 N -0.44 -5.49 18.54 42.15 0.78 -4.71 16 6 C 0.07 0.54 4.30 -3.82 -0.02 0.52 16 7 N -0.51 -4.81 4.05 -226.65 -0.92 -5.73 16 8 C 0.06 0.76 4.98 -3.82 -0.02 0.74 16 9 C -0.10 -1.47 4.30 -26.73 -0.11 -1.59 16 10 C -0.11 -2.19 5.67 37.16 0.21 -1.98 16 11 S -0.13 -3.34 21.44 -107.50 -2.30 -5.64 16 12 C -0.52 -14.63 9.50 30.94 0.29 -14.34 16 13 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 16 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.00 -0.03 4.25 -67.71 -0.29 -0.32 16 21 C -0.17 -1.31 8.99 -26.73 -0.24 -1.55 16 22 C -0.17 -1.62 8.60 -26.73 -0.23 -1.85 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.09 0.64 6.99 -51.93 -0.36 0.28 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 27 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 28 H 0.04 0.43 8.04 -51.93 -0.42 0.01 16 29 H 0.07 0.84 7.80 -51.93 -0.40 0.44 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.14 5.16 -51.93 -0.27 0.87 16 32 H 0.06 1.10 8.14 -51.91 -0.42 0.68 16 33 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.75 7.38 -51.93 -0.38 0.37 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.11 1.33 6.07 -51.93 -0.32 1.01 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -31.25 335.31 -8.62 -39.86 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.23 Total: -2.67 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -0.71 Total: -17.49 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.60 Total: -35.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.30 Total: -5.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.25 -8.62 -39.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.433 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds