Wall clock time and date at job start Mon Mar 30 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46822 * 2 1 4 4 C 1.47193 * 109.47132 * 120.00351 * 2 1 3 5 5 N 2.60794 * 109.47310 * 120.00318 * 2 1 3 6 6 C 1.53002 * 109.46971 * 240.00320 * 2 1 3 7 7 N 1.46900 * 109.46981 * 64.99569 * 6 2 1 8 8 C 1.46896 * 111.00054 * 189.99967 * 7 6 2 9 9 C 1.53007 * 109.47287 * 163.45625 * 8 7 6 10 10 C 1.53001 * 109.47139 * 185.90332 * 9 8 7 11 11 S 1.80999 * 109.47004 * 180.02562 * 10 9 8 12 12 C 1.76205 * 99.99914 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99983 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99875 * 179.97438 * 12 11 10 15 15 N 1.31628 * 120.00007 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00075 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46956 * 60.00282 * 16 14 12 18 18 H 1.48500 * 109.47362 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47229 * 300.00516 * 16 14 12 20 20 C 1.46910 * 110.99991 * 66.04893 * 7 6 2 21 21 C 1.52997 * 117.49625 * 263.86012 * 20 7 6 22 22 C 1.52996 * 60.00008 * 252.51053 * 21 20 7 23 23 H 1.09004 * 109.46842 * 299.99467 * 1 2 3 24 24 H 1.08999 * 109.47412 * 59.99631 * 1 2 3 25 25 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47176 * 184.99882 * 6 2 1 27 27 H 1.09002 * 109.47266 * 305.00420 * 6 2 1 28 28 H 1.08999 * 109.47177 * 283.45517 * 8 7 6 29 29 H 1.08996 * 109.47035 * 43.45800 * 8 7 6 30 30 H 1.08994 * 109.46772 * 305.90129 * 9 8 7 31 31 H 1.08997 * 109.46694 * 65.90383 * 9 8 7 32 32 H 1.09003 * 109.46923 * 299.99600 * 10 9 8 33 33 H 1.08993 * 109.47344 * 59.99923 * 10 9 8 34 34 H 0.97002 * 119.99895 * 180.02562 * 15 14 12 35 35 H 1.08996 * 115.54651 * 49.56339 * 20 7 6 36 36 H 1.09007 * 117.49859 * 359.97438 * 21 20 7 37 37 H 1.08995 * 117.49916 * 145.01768 * 21 20 7 38 38 H 1.09002 * 117.49618 * 252.51404 * 22 21 20 39 39 H 1.09001 * 117.50127 * 107.49288 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3995 -1.2295 2.1293 6 6 2.0401 -0.7212 -1.2493 7 7 1.6513 0.0375 -2.4456 8 6 1.9123 -0.7355 -3.6672 9 6 1.1391 -0.1201 -4.8353 10 6 1.2923 -1.0074 -6.0722 11 16 0.3783 -0.2789 -7.4542 12 6 0.7185 -1.4697 -8.7077 13 1 1.3346 -2.3280 -8.4841 14 6 0.1948 -1.3044 -9.9823 15 7 -0.5556 -0.2580 -10.2550 16 14 0.5561 -2.5664 -11.3114 17 1 0.0477 -3.8946 -10.8840 18 1 -0.1151 -2.1626 -12.5730 19 1 2.0223 -2.6456 -11.5334 20 6 2.3340 1.3376 -2.4895 21 6 1.5759 2.5521 -1.9501 22 6 1.7881 2.3900 -3.4565 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 3.1263 -0.7994 -1.2057 27 1 1.6054 -1.7197 -1.2953 28 1 2.9796 -0.7168 -3.8879 29 1 1.5896 -1.7663 -3.5207 30 1 0.0843 -0.0427 -4.5721 31 1 1.5341 0.8730 -5.0493 32 1 2.3473 -1.0848 -6.3354 33 1 0.8975 -2.0005 -5.8582 34 1 -0.9220 -0.1427 -11.1457 35 1 3.4125 1.3076 -2.3346 36 1 0.5704 2.3866 -1.5631 37 1 2.1556 3.3215 -1.4401 38 1 2.5075 3.0527 -3.9377 39 1 0.9224 2.1178 -4.0604 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336677298.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:45 Heat of formation + Delta-G solvation = 22.776811 kcal Electronic energy + Delta-G solvation = -17719.692137 eV Core-core repulsion = 14981.303094 eV Total energy + Delta-G solvation = -2738.389043 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11074 -37.96533 -35.66055 -35.15118 -34.56719 -32.52555 -28.00721 -27.42317 -25.83397 -23.95842 -23.23003 -22.33241 -21.01520 -19.50224 -18.35839 -16.98098 -16.86727 -16.82409 -16.28300 -15.82667 -15.40145 -15.20273 -14.88925 -14.74323 -14.15014 -13.77316 -13.75685 -13.58380 -13.38423 -13.08718 -12.95165 -12.87414 -12.59932 -12.48796 -12.27492 -12.16022 -11.95714 -11.87664 -11.58455 -11.34881 -11.11377 -10.83822 -10.81020 -10.25402 -9.27534 -8.60925 -8.34406 -6.09222 1.33234 1.41855 1.48813 1.69020 1.78257 1.81672 2.31797 2.64989 2.99611 3.00206 3.25590 3.37156 3.83816 4.03951 4.11219 4.19059 4.21935 4.26713 4.41741 4.48316 4.49693 4.60700 4.72445 4.80705 4.89918 4.91808 4.96823 5.00536 5.09255 5.19653 5.26293 5.34956 5.42275 5.43730 5.48212 5.57785 6.06401 6.20698 6.23512 6.56733 7.08025 8.74556 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.034114 B = 0.003295 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.568376 B = 8496.304233 C = 8936.294286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.017 3.983 3 H 0.134 0.866 4 C 0.240 3.760 5 N -0.494 5.494 6 C 0.067 3.933 7 N -0.506 5.506 8 C 0.074 3.926 9 C -0.086 4.086 10 C -0.090 4.090 11 S -0.194 6.194 12 C -0.539 4.539 13 H 0.071 0.929 14 C 0.016 3.984 15 N -0.907 5.907 16 Si 0.991 3.009 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.265 1.265 20 C -0.007 4.007 21 C -0.149 4.149 22 C -0.187 4.187 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.271 0.729 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 3.645 18.055 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.005 4.005 3 H 0.152 0.848 4 C -0.077 4.077 5 N -0.170 5.170 6 C -0.062 4.062 7 N -0.230 5.230 8 C -0.055 4.055 9 C -0.125 4.125 10 C -0.239 4.239 11 S 0.035 5.965 12 C -0.687 4.687 13 H 0.089 0.911 14 C -0.189 4.189 15 N -0.543 5.543 16 Si 0.813 3.187 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.190 1.190 20 C -0.116 4.116 21 C -0.187 4.187 22 C -0.225 4.225 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.011 3.964 19.293 20.101 hybrid contribution 1.554 -1.782 -1.445 2.771 sum 5.565 2.182 17.848 18.823 Atomic orbital electron populations 1.21743 0.90510 1.03172 1.03917 1.18964 0.98322 0.99471 0.83761 0.84827 1.29640 0.91605 0.92288 0.94197 1.81253 1.11050 1.11259 1.13464 1.22033 0.98896 0.97265 0.87993 1.61620 1.57332 1.02750 1.01278 1.21943 0.97948 0.97150 0.88465 1.21400 1.01319 0.98699 0.91054 1.23200 1.01319 1.01769 0.97619 1.84579 1.68330 1.37434 1.06163 1.23023 1.37325 1.10560 0.97793 0.91087 1.26027 0.94176 0.98289 1.00426 1.70144 1.32617 1.29197 1.22387 0.85115 0.78849 0.78074 0.76693 1.19000 1.20023 1.19009 1.22512 0.95476 0.86351 1.07237 1.23209 1.02372 0.97655 0.95433 1.23197 1.03778 1.01486 0.94000 0.91417 0.89202 0.92460 0.93587 0.89470 0.94294 0.90236 0.91531 0.90599 0.92403 0.92200 0.92013 0.88954 0.87381 0.87100 0.88651 0.88983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.04 71.98 0.65 -0.80 16 2 C 0.02 0.19 2.58 -12.60 -0.03 0.16 16 3 H 0.13 1.13 6.18 -2.39 -0.01 1.12 16 4 C 0.24 4.12 14.64 89.44 1.31 5.43 16 5 N -0.49 -11.74 18.54 20.00 0.37 -11.37 16 6 C 0.07 0.91 4.30 86.30 0.37 1.28 16 7 N -0.51 -8.51 4.05 -870.98 -3.53 -12.04 16 8 C 0.07 1.60 4.98 86.31 0.43 2.03 16 9 C -0.09 -2.50 4.30 30.60 0.13 -2.37 16 10 C -0.09 -3.44 5.67 71.98 0.41 -3.03 16 11 S -0.19 -10.10 21.44 -56.49 -1.21 -11.31 16 12 C -0.54 -30.89 9.50 67.95 0.65 -30.25 16 13 H 0.07 3.92 7.80 -2.91 -0.02 3.89 16 14 C 0.02 0.89 5.49 84.86 0.47 1.36 16 15 N -0.91 -54.43 13.22 21.65 0.29 -54.14 16 16 Si 0.99 43.62 29.55 68.60 2.03 45.65 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 C -0.01 -0.11 4.25 44.91 0.19 0.08 16 21 C -0.15 -1.87 8.99 30.59 0.27 -1.59 16 22 C -0.19 -3.43 8.60 30.59 0.26 -3.17 16 23 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.09 1.04 6.99 -2.39 -0.02 1.03 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 27 H 0.09 1.19 7.86 -2.39 -0.02 1.17 16 28 H 0.04 0.84 8.04 -2.39 -0.02 0.82 16 29 H 0.08 1.65 7.80 -2.39 -0.02 1.63 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.08 2.25 5.16 -2.39 -0.01 2.24 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.27 8.14 -2.40 -0.02 2.26 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 1.27 7.38 -2.38 -0.02 1.25 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.13 6.07 -2.39 -0.01 2.11 16 Total: -1.00 -68.23 335.31 4.07 -64.16 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.02 Total: 9.93 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 5.11 Total: -30.88 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -2.87 Total: -77.55 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -10.10 SS G_CDS: -1.21 Total: -11.31 kcal Total: -68.23 4.07 -64.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336677298.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.937 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds