Wall clock time and date at job start Mon Mar 30 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99728 * 2 1 4 4 H 1.48500 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46973 * 300.00152 * 3 2 1 6 6 H 1.48496 * 109.47191 * 60.00257 * 3 2 1 7 7 C 1.37875 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47113 * 180.02562 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.86668 * 305.99199 * 14 13 12 16 16 C 1.54228 * 109.87350 * 185.00069 * 14 13 12 17 17 C 1.55674 * 103.94351 * 240.13376 * 16 14 13 18 18 H 1.09000 * 112.62838 * 217.04632 * 17 16 14 19 19 C 1.53018 * 106.60046 * 93.45121 * 17 16 14 20 20 C 1.51381 * 111.47774 * 198.47462 * 19 17 16 21 21 C 1.53262 * 109.51902 * 60.16840 * 20 19 17 22 22 C 1.52855 * 108.34366 * 297.37539 * 21 20 19 23 23 C 1.51064 * 111.36422 * 59.17219 * 22 21 20 24 24 H 1.09010 * 109.01117 * 185.54012 * 23 22 21 25 25 O 1.43393 * 112.29461 * 64.72201 * 23 22 21 26 26 H 0.97000 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47185 * 60.00097 * 9 7 2 28 28 H 1.08995 * 109.46894 * 300.00042 * 9 7 2 29 29 H 1.08997 * 109.47562 * 60.00381 * 10 9 7 30 30 H 1.08998 * 109.47270 * 299.99297 * 10 9 7 31 31 H 1.09007 * 109.46516 * 59.99962 * 11 10 9 32 32 H 1.09004 * 109.47113 * 300.00431 * 11 10 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 34 34 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 35 35 H 1.08995 * 110.53405 * 358.74906 * 16 14 13 36 36 H 1.09001 * 110.53277 * 121.37861 * 16 14 13 37 37 H 1.08996 * 109.22214 * 317.01637 * 19 17 16 38 38 H 1.09003 * 109.21207 * 76.34354 * 19 17 16 39 39 H 1.09001 * 108.54990 * 300.52708 * 20 19 17 40 40 H 1.08998 * 109.91956 * 180.65187 * 20 19 17 41 41 H 1.09001 * 109.69405 * 177.66060 * 21 20 19 42 42 H 1.08999 * 109.68824 * 57.09046 * 21 20 19 43 43 H 1.08997 * 109.09795 * 298.68870 * 22 21 20 44 44 H 1.09003 * 109.10290 * 179.65719 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 8 2.4092 -6.0732 -0.0018 13 6 1.7947 -7.3633 -0.0018 14 6 2.8777 -8.4440 -0.0018 15 1 3.5655 -8.2792 -0.8313 16 6 2.2282 -9.8371 -0.1283 17 6 2.6704 -10.5763 1.1684 18 1 2.8787 -11.6327 0.9987 19 6 1.5565 -10.3617 2.1954 20 6 2.0418 -10.6306 3.6038 21 6 3.1950 -9.6782 3.9386 22 6 4.3513 -9.9678 2.9818 23 6 3.9346 -9.7796 1.5421 24 1 4.7530 -10.0895 0.8921 25 8 3.5963 -8.4177 1.2473 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8728 -3.6046 0.8877 30 1 2.8714 -3.6038 -0.8923 31 1 0.8529 -5.0446 -0.8906 32 1 0.8548 -5.0450 0.8895 33 1 1.1741 -7.4702 -0.8916 34 1 1.1749 -7.4705 0.8884 35 1 1.1424 -9.7506 -0.1677 36 1 2.6019 -10.3543 -1.0121 37 1 1.2276 -9.3233 2.1563 38 1 0.7161 -11.0127 1.9543 39 1 2.3910 -11.6616 3.6594 40 1 1.2269 -10.4817 4.3122 41 1 3.5193 -9.8410 4.9665 42 1 2.8664 -8.6462 3.8159 43 1 4.6841 -10.9958 3.1254 44 1 5.1771 -9.2923 3.2054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379197763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:26 Heat of formation + Delta-G solvation = -129.453060 kcal Electronic energy + Delta-G solvation = -20752.754430 eV Core-core repulsion = 17668.551677 eV Total energy + Delta-G solvation = -3084.202753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.70742 -37.62172 -35.99566 -33.85550 -33.07318 -31.57568 -30.28596 -29.71798 -26.74615 -25.26550 -22.84182 -22.74612 -22.11992 -21.16895 -20.03706 -19.56965 -17.03184 -16.38473 -16.33317 -15.67861 -15.48248 -15.13568 -14.73782 -14.46825 -14.38317 -13.75473 -13.44067 -13.14470 -13.02624 -12.36559 -12.25480 -12.10764 -11.86281 -11.81356 -11.62591 -11.39078 -11.34394 -11.08608 -10.86244 -10.79175 -10.50725 -10.36349 -10.32145 -10.25552 -9.78026 -9.55709 -9.38456 -9.13938 -9.04618 -8.32375 -5.97542 -3.99344 3.34091 3.41140 3.46517 3.65383 3.93717 4.19621 4.36057 4.49974 4.60118 4.73276 4.84347 4.93667 5.02013 5.07942 5.19868 5.21830 5.29675 5.34067 5.38510 5.40700 5.46404 5.50816 5.63144 5.67230 5.77567 5.80831 5.90084 5.92585 5.96114 6.00150 6.02335 6.03707 6.25343 6.27176 6.75536 6.77502 6.92082 7.15447 7.64029 7.71885 7.83490 8.02620 8.46095 9.07627 9.64559 11.14114 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.002964 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.602932 B = 9443.893570 C = 9629.958371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.023 3.977 10 C -0.107 4.107 11 C 0.063 3.937 12 O -0.384 6.384 13 C 0.064 3.936 14 C 0.080 3.920 15 H 0.076 0.924 16 C -0.149 4.149 17 C -0.115 4.115 18 H 0.092 0.908 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.110 4.110 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.348 6.348 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.072 -26.021 3.521 26.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.145 4.145 11 C -0.013 4.013 12 O -0.303 6.303 13 C -0.013 4.013 14 C 0.022 3.978 15 H 0.094 0.906 16 C -0.187 4.187 17 C -0.133 4.133 18 H 0.110 0.890 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.148 4.148 23 C 0.022 3.978 24 H 0.074 0.926 25 O -0.267 6.267 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.173 -25.671 3.639 26.261 hybrid contribution -0.009 0.744 -0.253 0.786 sum 4.164 -24.926 3.385 25.498 Atomic orbital electron populations 1.69979 1.06067 1.26479 1.51141 1.25033 0.94873 0.99315 0.95354 0.86510 0.80181 0.83652 0.77529 1.19659 1.21031 1.21009 1.21277 0.93201 0.90860 1.50221 0.92455 1.19054 0.93935 0.91127 0.97286 1.21641 0.99616 0.91703 1.01526 1.22780 0.92171 0.87097 0.99276 1.87949 1.33984 1.13055 1.95313 1.22624 0.94284 0.84211 1.00225 1.22790 0.93462 0.93512 0.88053 0.90612 1.23256 1.02046 0.94959 0.98454 1.22703 0.95981 0.99663 0.94985 0.88979 1.21287 0.97012 1.02509 0.94232 1.21276 0.98451 0.99361 0.96528 1.21518 0.95178 1.00586 0.98310 1.21077 0.98988 1.01840 0.92863 1.22233 0.95688 0.83108 0.96793 0.92555 1.88996 1.74535 1.24384 1.38820 0.93079 0.96523 0.96484 0.92542 0.92644 0.93996 0.93924 0.92635 0.93076 0.90030 0.90413 0.91535 0.91862 0.92396 0.91837 0.91883 0.90895 0.90908 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.43 5.52 -26.73 -0.15 -2.58 16 11 C 0.06 1.21 5.94 37.16 0.22 1.43 16 12 O -0.38 -7.10 10.34 -36.70 -0.38 -7.48 16 13 C 0.06 0.89 5.39 37.16 0.20 1.09 16 14 C 0.08 0.98 3.61 -26.09 -0.09 0.88 16 15 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.30 5.97 -24.66 -0.15 -1.45 16 17 C -0.11 -0.95 3.63 -88.65 -0.32 -1.28 16 18 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 19 C -0.11 -0.96 4.73 -27.54 -0.13 -1.09 16 20 C -0.12 -0.95 5.84 -27.41 -0.16 -1.11 16 21 C -0.12 -1.08 5.94 -26.67 -0.16 -1.24 16 22 C -0.11 -0.99 5.60 -27.78 -0.16 -1.15 16 23 C 0.08 0.81 3.07 -27.17 -0.08 0.73 16 24 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 25 O -0.35 -4.86 10.62 -36.70 -0.39 -5.25 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 35 H 0.08 0.66 7.30 -51.93 -0.38 0.28 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.69 7.23 -51.93 -0.38 0.32 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -32.07 344.51 -9.68 -41.76 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -8.29 Total: -5.39 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -1.53 Total: -19.24 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.74 Total: -26.71 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.77 Total: -12.73 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.07 -9.68 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379197763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.696 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds