Wall clock time and date at job start Mon Mar 30 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99728 * 2 1 4 4 H 1.48500 * 109.47109 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46973 * 300.00152 * 3 2 1 6 6 H 1.48496 * 109.47191 * 60.00257 * 3 2 1 7 7 C 1.37875 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00255 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46812 * 179.97438 * 9 7 2 11 11 C 1.53009 * 109.46952 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.47113 * 180.02562 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46726 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.86668 * 305.99199 * 14 13 12 16 16 C 1.54228 * 109.87350 * 185.00069 * 14 13 12 17 17 C 1.55674 * 103.94351 * 240.13376 * 16 14 13 18 18 H 1.09000 * 112.62838 * 217.04632 * 17 16 14 19 19 C 1.53018 * 106.60046 * 93.45121 * 17 16 14 20 20 C 1.51381 * 111.47774 * 198.47462 * 19 17 16 21 21 C 1.53262 * 109.51902 * 60.16840 * 20 19 17 22 22 C 1.52855 * 108.34366 * 297.37539 * 21 20 19 23 23 C 1.51064 * 111.36422 * 59.17219 * 22 21 20 24 24 H 1.09010 * 109.01117 * 185.54012 * 23 22 21 25 25 O 1.43393 * 112.29461 * 64.72201 * 23 22 21 26 26 H 0.97000 * 120.00063 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47185 * 60.00097 * 9 7 2 28 28 H 1.08995 * 109.46894 * 300.00042 * 9 7 2 29 29 H 1.08997 * 109.47562 * 60.00381 * 10 9 7 30 30 H 1.08998 * 109.47270 * 299.99297 * 10 9 7 31 31 H 1.09007 * 109.46516 * 59.99962 * 11 10 9 32 32 H 1.09004 * 109.47113 * 300.00431 * 11 10 9 33 33 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 34 34 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 35 35 H 1.08995 * 110.53405 * 358.74906 * 16 14 13 36 36 H 1.09001 * 110.53277 * 121.37861 * 16 14 13 37 37 H 1.08996 * 109.22214 * 317.01637 * 19 17 16 38 38 H 1.09003 * 109.21207 * 76.34354 * 19 17 16 39 39 H 1.09001 * 108.54990 * 300.52708 * 20 19 17 40 40 H 1.08998 * 109.91956 * 180.65187 * 20 19 17 41 41 H 1.09001 * 109.69405 * 177.66060 * 21 20 19 42 42 H 1.08999 * 109.68824 * 57.09046 * 21 20 19 43 43 H 1.08997 * 109.09795 * 298.68870 * 22 21 20 44 44 H 1.09003 * 109.10290 * 179.65719 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0018 11 6 1.4805 -4.9871 -0.0012 12 8 2.4092 -6.0732 -0.0018 13 6 1.7947 -7.3633 -0.0018 14 6 2.8777 -8.4440 -0.0018 15 1 3.5655 -8.2792 -0.8313 16 6 2.2282 -9.8371 -0.1283 17 6 2.6704 -10.5763 1.1684 18 1 2.8787 -11.6327 0.9987 19 6 1.5565 -10.3617 2.1954 20 6 2.0418 -10.6306 3.6038 21 6 3.1950 -9.6782 3.9386 22 6 4.3513 -9.9678 2.9818 23 6 3.9346 -9.7796 1.5421 24 1 4.7530 -10.0895 0.8921 25 8 3.5963 -8.4177 1.2473 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6249 -2.5571 0.8896 29 1 2.8728 -3.6046 0.8877 30 1 2.8714 -3.6038 -0.8923 31 1 0.8529 -5.0446 -0.8906 32 1 0.8548 -5.0450 0.8895 33 1 1.1741 -7.4702 -0.8916 34 1 1.1749 -7.4705 0.8884 35 1 1.1424 -9.7506 -0.1677 36 1 2.6019 -10.3543 -1.0121 37 1 1.2276 -9.3233 2.1563 38 1 0.7161 -11.0127 1.9543 39 1 2.3910 -11.6616 3.6594 40 1 1.2269 -10.4817 4.3122 41 1 3.5193 -9.8410 4.9665 42 1 2.8664 -8.6462 3.8159 43 1 4.6841 -10.9958 3.1254 44 1 5.1771 -9.2923 3.2054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379197763.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:26 Heat of formation + Delta-G solvation = -147.985330 kcal Electronic energy + Delta-G solvation = -20753.558050 eV Core-core repulsion = 17668.551677 eV Total energy + Delta-G solvation = -3085.006373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.50898 -38.98827 -36.86676 -35.86209 -33.99420 -33.45383 -31.11001 -30.68071 -28.57497 -26.36176 -24.74113 -23.45829 -22.97719 -22.23659 -21.70117 -20.29803 -18.60558 -17.95233 -17.42075 -16.96909 -16.59585 -16.42393 -16.20980 -15.74442 -15.16778 -14.95306 -14.56098 -14.31976 -14.14597 -13.98879 -13.52927 -13.23507 -13.02058 -12.78311 -12.76043 -12.72434 -12.52039 -12.44144 -12.25221 -12.04294 -11.88122 -11.71401 -11.50108 -11.46131 -11.18859 -11.03138 -10.99987 -10.58714 -10.56325 -10.41048 -8.22903 -6.34086 1.39496 1.39979 1.54049 2.38872 2.65949 2.88927 3.10228 3.48090 3.65992 3.87946 3.95478 4.03311 4.10097 4.16933 4.19006 4.26989 4.32618 4.39960 4.46200 4.50383 4.56669 4.59879 4.66308 4.67943 4.84253 4.88270 4.90129 4.93742 5.00929 5.07213 5.10799 5.13869 5.24402 5.32906 5.34490 5.35840 5.46792 5.55658 5.66807 5.80112 6.05786 6.18099 6.32192 6.81199 7.35055 8.89451 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.002964 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.602932 B = 9443.893570 C = 9629.958371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.097 4.097 11 C 0.074 3.926 12 O -0.405 6.405 13 C 0.057 3.943 14 C 0.076 3.924 15 H 0.070 0.930 16 C -0.141 4.141 17 C -0.107 4.107 18 H 0.120 0.880 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.111 4.111 23 C 0.069 3.931 24 H 0.063 0.937 25 O -0.385 6.385 26 H 0.265 0.735 27 H -0.001 1.001 28 H -0.004 1.004 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.099 0.901 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 -27.679 3.253 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.134 4.134 11 C -0.002 4.002 12 O -0.325 6.325 13 C -0.020 4.020 14 C 0.018 3.982 15 H 0.088 0.912 16 C -0.179 4.179 17 C -0.125 4.125 18 H 0.138 0.862 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.148 4.148 23 C 0.012 3.988 24 H 0.081 0.919 25 O -0.305 6.305 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.014 0.986 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.118 0.882 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.672 -27.351 3.372 27.952 hybrid contribution -0.164 1.220 -0.146 1.239 sum 4.508 -26.132 3.226 26.713 Atomic orbital electron populations 1.70094 1.07727 1.27876 1.51494 1.25992 0.95860 1.03398 0.94518 0.85348 0.78936 0.78478 0.77979 1.18819 1.20022 1.20127 1.21675 0.93532 0.92302 1.50894 0.92410 1.18919 0.94162 0.92422 0.95346 1.21395 0.98649 0.92349 1.01041 1.22478 0.91656 0.86165 0.99927 1.87899 1.34590 1.14488 1.95492 1.22942 0.95339 0.82543 1.01144 1.22885 0.93025 0.94877 0.87428 0.91248 1.23251 1.02318 0.92683 0.99627 1.22737 0.94645 1.00721 0.94385 0.86178 1.21310 0.97758 1.01260 0.94749 1.21267 0.97906 0.99932 0.96256 1.21503 0.95985 0.99082 0.99120 1.21127 0.98347 1.03040 0.92279 1.22502 0.96946 0.81867 0.97501 0.91912 1.88966 1.74986 1.27031 1.39501 0.92594 0.98222 0.98554 0.93308 0.92721 0.92829 0.93789 0.90521 0.93176 0.89223 0.88281 0.94193 0.90133 0.90385 0.91733 0.90852 0.94218 0.88218 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.55 -32.56 9.11 25.60 0.23 -32.33 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.59 4.97 29.85 0.15 1.74 16 10 C -0.10 -4.48 5.52 30.60 0.17 -4.31 16 11 C 0.07 2.89 5.94 71.99 0.43 3.31 16 12 O -0.40 -15.11 10.34 -147.57 -1.53 -16.63 16 13 C 0.06 1.57 5.39 71.98 0.39 1.96 16 14 C 0.08 1.81 3.61 31.01 0.11 1.92 16 15 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 16 C -0.14 -2.13 5.97 31.93 0.19 -1.94 16 17 C -0.11 -1.50 3.63 -9.52 -0.03 -1.53 16 18 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 19 C -0.11 -1.72 4.73 30.07 0.14 -1.58 16 20 C -0.12 -1.65 5.84 30.15 0.18 -1.47 16 21 C -0.12 -2.13 5.94 30.63 0.18 -1.95 16 22 C -0.11 -1.88 5.60 29.92 0.17 -1.71 16 23 C 0.07 1.32 3.07 30.31 0.09 1.42 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.08 16 25 O -0.38 -10.85 10.62 -147.57 -1.57 -12.42 16 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 27 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.05 2.50 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.39 7.56 -2.39 -0.02 1.37 16 35 H 0.09 1.22 7.30 -2.39 -0.02 1.20 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.04 0.82 7.23 -2.39 -0.02 0.80 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.04 0.96 8.05 -2.39 -0.02 0.94 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -69.96 344.51 3.00 -66.96 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.93 Total: 7.98 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 2.86 Total: -36.00 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.28 Total: -57.36 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -3.09 Total: -29.05 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.96 3.00 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379197763.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.022 kcal (2) G-P(sol) polarization free energy of solvation -69.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds