Wall clock time and date at job start Mon Mar 30 2020 07:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47092 * 270.00270 * 3 2 1 5 5 H 1.48493 * 109.47143 * 30.00663 * 3 2 1 6 6 H 1.48508 * 109.46892 * 150.00462 * 3 2 1 7 7 C 1.37876 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47314 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47148 * 180.02562 * 11 10 9 13 13 C 1.42906 * 113.99902 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46987 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.97061 * 305.39378 * 14 13 12 16 16 C 1.55373 * 109.87083 * 184.33673 * 14 13 12 17 17 C 1.53879 * 101.14749 * 218.99445 * 16 14 13 18 18 H 1.09000 * 112.16614 * 279.68465 * 17 16 14 19 19 C 1.52015 * 114.90704 * 151.23872 * 17 16 14 20 20 C 1.53675 * 107.32041 * 186.34452 * 19 17 16 21 21 C 1.52588 * 111.48132 * 58.31392 * 20 19 17 22 22 C 1.53778 * 111.27361 * 305.12470 * 21 20 19 23 23 C 1.51172 * 107.48708 * 57.19474 * 22 21 20 24 24 H 1.08998 * 108.36186 * 52.99864 * 23 22 21 25 25 O 1.41439 * 118.46998 * 177.41275 * 23 22 21 26 26 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47003 * 60.00522 * 9 7 2 28 28 H 1.08998 * 109.47787 * 300.00124 * 9 7 2 29 29 H 1.09003 * 109.47062 * 60.00006 * 10 9 7 30 30 H 1.08996 * 109.47155 * 300.00264 * 10 9 7 31 31 H 1.08993 * 109.47457 * 59.99905 * 11 10 9 32 32 H 1.09003 * 109.47483 * 299.99579 * 11 10 9 33 33 H 1.08990 * 109.47271 * 59.99774 * 13 12 11 34 34 H 1.09005 * 109.46572 * 299.99320 * 13 12 11 35 35 H 1.09000 * 111.08598 * 101.02537 * 16 14 13 36 36 H 1.09003 * 111.08174 * 336.96017 * 16 14 13 37 37 H 1.08999 * 109.88716 * 66.89016 * 19 17 16 38 38 H 1.09009 * 109.94369 * 305.83471 * 19 17 16 39 39 H 1.09001 * 109.07810 * 297.80284 * 20 19 17 40 40 H 1.09000 * 109.02396 * 178.79209 * 20 19 17 41 41 H 1.09002 * 109.11002 * 65.56844 * 21 20 19 42 42 H 1.09000 * 109.10726 * 184.68274 * 21 20 19 43 43 H 1.09001 * 109.86981 * 176.62233 * 22 21 20 44 44 H 1.09006 * 109.86727 * 297.66383 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5514 -2.6365 -0.0009 12 8 6.0278 -3.9838 -0.0014 13 6 7.4524 -4.0966 -0.0008 14 6 7.8469 -5.5749 -0.0021 15 1 7.3692 -6.0884 0.8323 16 6 9.3908 -5.7096 0.1091 17 6 9.6566 -6.8846 -0.8482 18 1 9.4514 -7.8487 -0.3829 19 6 11.0236 -6.8721 -1.5132 20 6 11.0432 -8.0150 -2.5403 21 6 9.9321 -7.8565 -3.5740 22 6 8.5561 -7.7298 -2.8992 23 6 8.6199 -6.5504 -1.9556 24 1 8.9747 -5.6835 -2.5130 25 8 7.4494 -6.1884 -1.2488 26 1 -0.4851 0.8400 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9148 -2.1226 0.8889 32 1 5.9149 -2.1228 -0.8910 33 1 7.8547 -3.6135 0.8895 34 1 7.8555 -3.6127 -0.8905 35 1 9.6905 -5.9577 1.1272 36 1 9.8892 -4.8032 -0.2348 37 1 11.8009 -7.0317 -0.7659 38 1 11.1835 -5.9184 -2.0165 39 1 10.9129 -8.9639 -2.0199 40 1 12.0065 -8.0179 -3.0503 41 1 10.1221 -6.9624 -4.1678 42 1 9.9288 -8.7266 -4.2305 43 1 7.7881 -7.5580 -3.6533 44 1 8.3320 -8.6391 -2.3413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379197764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:29 Heat of formation + Delta-G solvation = -123.266960 kcal Electronic energy + Delta-G solvation = -20456.967148 eV Core-core repulsion = 17373.032644 eV Total energy + Delta-G solvation = -3083.934504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76068 -37.79183 -36.48825 -33.92491 -32.96465 -31.73328 -30.07257 -30.04714 -27.21189 -25.46814 -22.70315 -22.58234 -21.71941 -21.35596 -20.35005 -19.94063 -17.00157 -16.77408 -16.26816 -15.96959 -15.48337 -15.38442 -14.96926 -14.33584 -14.17549 -14.02412 -13.55407 -13.26947 -12.98763 -12.71705 -12.55714 -12.31167 -12.15040 -11.84157 -11.59883 -11.49960 -11.36810 -11.20171 -10.96419 -10.89558 -10.83234 -10.64538 -10.20485 -9.99030 -9.80491 -9.64504 -9.49289 -9.23934 -9.15342 -8.50845 -6.00797 -3.98725 3.32650 3.39256 3.39894 3.43107 3.85874 4.15526 4.25575 4.47717 4.49827 4.63876 4.65018 4.84067 4.93697 5.00889 5.05042 5.09923 5.16752 5.23160 5.32610 5.34002 5.40405 5.42068 5.51600 5.56549 5.66811 5.68994 5.72539 5.75403 5.78622 5.80293 5.93537 5.99099 6.08318 6.10716 6.56338 6.58942 6.92892 6.96193 7.32217 7.45601 7.56864 7.83071 8.58568 9.05051 9.61152 11.12748 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.002773 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.573865 B =10095.222594 C =10290.214395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.060 3.940 12 O -0.380 6.380 13 C 0.052 3.948 14 C 0.084 3.916 15 H 0.092 0.908 16 C -0.142 4.142 17 C -0.127 4.127 18 H 0.090 0.910 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.112 4.112 23 C 0.074 3.926 24 H 0.054 0.946 25 O -0.352 6.352 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.512 -15.128 -3.095 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.016 4.016 12 O -0.299 6.299 13 C -0.026 4.026 14 C 0.026 3.974 15 H 0.110 0.890 16 C -0.179 4.179 17 C -0.146 4.146 18 H 0.109 0.891 19 C -0.145 4.145 20 C -0.159 4.159 21 C -0.153 4.153 22 C -0.150 4.150 23 C 0.015 3.985 24 H 0.072 0.928 25 O -0.271 6.271 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.019 -15.191 -3.175 30.296 hybrid contribution 0.703 1.305 0.069 1.484 sum 26.722 -13.886 -3.106 30.274 Atomic orbital electron populations 1.69917 1.06275 1.26837 1.51257 1.25037 0.94758 0.99153 0.94644 0.86762 0.80324 0.83617 0.78479 1.20290 1.21372 1.19068 1.21123 0.89319 0.94603 1.50606 0.90863 1.19522 0.97360 0.91712 0.96245 1.21444 0.89932 0.99970 1.02413 1.22790 0.97441 0.82169 0.99185 1.87965 1.19017 1.27659 1.95281 1.22820 0.83795 0.95792 1.00145 1.23199 0.93666 0.92701 0.87799 0.88975 1.22940 0.94790 0.99133 1.01060 1.22758 0.96687 0.99154 0.96007 0.89147 1.21435 0.95909 0.99246 0.97892 1.21566 0.98644 0.98746 0.96914 1.21517 0.93634 1.02316 0.97866 1.21366 0.97608 0.97524 0.98489 1.22301 0.85329 0.97132 0.93699 0.92829 1.88458 1.28275 1.78921 1.31492 0.92752 0.96585 0.96998 0.91920 0.91986 0.94002 0.93996 0.92666 0.93395 0.89640 0.90169 0.91450 0.91479 0.91921 0.91789 0.91853 0.91308 0.90868 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.51 13.96 55.43 0.77 -27.74 16 2 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 8 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -2.17 5.52 -26.73 -0.15 -2.32 16 11 C 0.06 1.10 5.94 37.15 0.22 1.32 16 12 O -0.38 -6.79 10.33 -37.10 -0.38 -7.18 16 13 C 0.05 0.70 5.51 37.16 0.20 0.90 16 14 C 0.08 1.00 3.80 -25.47 -0.10 0.90 16 15 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.14 -1.17 6.13 -25.01 -0.15 -1.32 16 17 C -0.13 -1.02 2.76 -89.43 -0.25 -1.27 16 18 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 19 C -0.11 -0.67 5.58 -26.88 -0.15 -0.82 16 20 C -0.12 -0.70 5.84 -26.59 -0.16 -0.86 16 21 C -0.12 -0.76 5.83 -26.54 -0.15 -0.92 16 22 C -0.11 -0.98 5.97 -27.25 -0.16 -1.15 16 23 C 0.07 0.77 2.80 -26.42 -0.07 0.69 16 24 H 0.05 0.57 7.81 -51.93 -0.41 0.16 16 25 O -0.35 -4.99 11.03 -36.99 -0.41 -5.40 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 29 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.43 7.96 -51.92 -0.41 0.02 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -32.79 343.33 -9.31 -42.11 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -8.34 Total: -5.36 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.46 Total: -19.06 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 0.77 Total: -27.74 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.79 Total: -12.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.79 -9.31 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379197764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.157 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds