Wall clock time and date at job start Mon Mar 30 2020 07:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99804 * 2 1 4 4 H 1.48503 * 109.47092 * 270.00270 * 3 2 1 5 5 H 1.48493 * 109.47143 * 30.00663 * 3 2 1 6 6 H 1.48508 * 109.46892 * 150.00462 * 3 2 1 7 7 C 1.37876 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00118 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99640 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47314 * 180.02562 * 10 9 7 12 12 O 1.42902 * 109.47148 * 180.02562 * 11 10 9 13 13 C 1.42906 * 113.99902 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46987 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.97061 * 305.39378 * 14 13 12 16 16 C 1.55373 * 109.87083 * 184.33673 * 14 13 12 17 17 C 1.53879 * 101.14749 * 218.99445 * 16 14 13 18 18 H 1.09000 * 112.16614 * 279.68465 * 17 16 14 19 19 C 1.52015 * 114.90704 * 151.23872 * 17 16 14 20 20 C 1.53675 * 107.32041 * 186.34452 * 19 17 16 21 21 C 1.52588 * 111.48132 * 58.31392 * 20 19 17 22 22 C 1.53778 * 111.27361 * 305.12470 * 21 20 19 23 23 C 1.51172 * 107.48708 * 57.19474 * 22 21 20 24 24 H 1.08998 * 108.36186 * 52.99864 * 23 22 21 25 25 O 1.41439 * 118.46998 * 177.41275 * 23 22 21 26 26 H 0.97001 * 120.00445 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47003 * 60.00522 * 9 7 2 28 28 H 1.08998 * 109.47787 * 300.00124 * 9 7 2 29 29 H 1.09003 * 109.47062 * 60.00006 * 10 9 7 30 30 H 1.08996 * 109.47155 * 300.00264 * 10 9 7 31 31 H 1.08993 * 109.47457 * 59.99905 * 11 10 9 32 32 H 1.09003 * 109.47483 * 299.99579 * 11 10 9 33 33 H 1.08990 * 109.47271 * 59.99774 * 13 12 11 34 34 H 1.09005 * 109.46572 * 299.99320 * 13 12 11 35 35 H 1.09000 * 111.08598 * 101.02537 * 16 14 13 36 36 H 1.09003 * 111.08174 * 336.96017 * 16 14 13 37 37 H 1.08999 * 109.88716 * 66.89016 * 19 17 16 38 38 H 1.09009 * 109.94369 * 305.83471 * 19 17 16 39 39 H 1.09001 * 109.07810 * 297.80284 * 20 19 17 40 40 H 1.09000 * 109.02396 * 178.79209 * 20 19 17 41 41 H 1.09002 * 109.11002 * 65.56844 * 21 20 19 42 42 H 1.09000 * 109.10726 * 184.68274 * 21 20 19 43 43 H 1.09001 * 109.86981 * 176.62233 * 22 21 20 44 44 H 1.09006 * 109.86727 * 297.66383 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5514 -2.6365 -0.0009 12 8 6.0278 -3.9838 -0.0014 13 6 7.4524 -4.0966 -0.0008 14 6 7.8469 -5.5749 -0.0021 15 1 7.3692 -6.0884 0.8323 16 6 9.3908 -5.7096 0.1091 17 6 9.6566 -6.8846 -0.8482 18 1 9.4514 -7.8487 -0.3829 19 6 11.0236 -6.8721 -1.5132 20 6 11.0432 -8.0150 -2.5403 21 6 9.9321 -7.8565 -3.5740 22 6 8.5561 -7.7298 -2.8992 23 6 8.6199 -6.5504 -1.9556 24 1 8.9747 -5.6835 -2.5130 25 8 7.4494 -6.1884 -1.2488 26 1 -0.4851 0.8400 0.0004 27 1 3.8751 -0.6805 0.8889 28 1 3.8745 -0.6800 -0.8911 29 1 3.6578 -3.1506 -0.8907 30 1 3.6585 -3.1502 0.8892 31 1 5.9148 -2.1226 0.8889 32 1 5.9149 -2.1228 -0.8910 33 1 7.8547 -3.6135 0.8895 34 1 7.8555 -3.6127 -0.8905 35 1 9.6905 -5.9577 1.1272 36 1 9.8892 -4.8032 -0.2348 37 1 11.8009 -7.0317 -0.7659 38 1 11.1835 -5.9184 -2.0165 39 1 10.9129 -8.9639 -2.0199 40 1 12.0065 -8.0179 -3.0503 41 1 10.1221 -6.9624 -4.1678 42 1 9.9288 -8.7266 -4.2305 43 1 7.7881 -7.5580 -3.6533 44 1 8.3320 -8.6391 -2.3413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379197764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:29 Heat of formation + Delta-G solvation = -143.311607 kcal Electronic energy + Delta-G solvation = -20457.836349 eV Core-core repulsion = 17373.032644 eV Total energy + Delta-G solvation = -3084.803705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.52770 -39.01872 -37.29921 -35.85868 -33.95136 -33.54349 -31.03013 -30.69546 -28.94418 -26.45238 -24.43225 -23.35938 -22.45649 -22.18020 -21.78603 -20.90665 -18.96884 -17.92429 -17.48047 -16.91357 -16.64114 -16.34433 -16.17686 -15.68773 -15.19254 -15.08056 -14.75397 -14.58945 -14.09840 -13.84432 -13.75346 -13.38080 -13.26346 -12.92185 -12.80001 -12.59976 -12.36790 -12.31878 -12.06848 -11.84695 -11.80487 -11.68321 -11.62274 -11.47875 -11.41522 -11.31282 -10.84595 -10.78007 -10.54515 -10.41977 -8.30477 -6.36187 1.36215 1.38948 1.51168 2.36283 2.53226 2.81069 3.04158 3.49420 3.62835 3.74286 3.98658 4.05370 4.09795 4.13286 4.17942 4.27403 4.31221 4.37161 4.43776 4.45768 4.53029 4.53810 4.59580 4.72283 4.76065 4.82806 4.84056 4.93280 4.94796 5.01512 5.06570 5.15794 5.20207 5.24167 5.29081 5.36323 5.42718 5.51298 5.52845 5.62228 6.09461 6.25219 6.34677 6.71721 7.28103 8.86738 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.002773 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.573865 B =10095.222594 C =10290.214395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.241 1.241 7 C -0.539 4.539 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.096 4.096 11 C 0.071 3.929 12 O -0.408 6.408 13 C 0.046 3.954 14 C 0.076 3.924 15 H 0.084 0.916 16 C -0.131 4.131 17 C -0.118 4.118 18 H 0.090 0.910 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.114 4.114 23 C 0.061 3.939 24 H 0.048 0.952 25 O -0.391 6.391 26 H 0.268 0.732 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.251 -14.218 -2.781 33.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.577 4.577 8 H 0.045 0.955 9 C -0.043 4.043 10 C -0.134 4.134 11 C -0.005 4.005 12 O -0.328 6.328 13 C -0.031 4.031 14 C 0.019 3.981 15 H 0.102 0.898 16 C -0.168 4.168 17 C -0.137 4.137 18 H 0.108 0.892 19 C -0.141 4.141 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.151 4.151 23 C 0.004 3.996 24 H 0.066 0.934 25 O -0.311 6.311 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.782 -14.306 -2.863 33.164 hybrid contribution -0.561 0.897 -0.051 1.059 sum 29.221 -13.409 -2.914 32.283 Atomic orbital electron populations 1.70082 1.08477 1.28348 1.52416 1.26125 0.95749 1.03903 0.93842 0.85543 0.79563 0.77476 0.79361 1.18994 1.20774 1.16457 1.21468 0.92128 0.93158 1.50933 0.95544 1.19430 0.93961 0.93796 0.97108 1.21273 0.93204 0.97876 1.01002 1.22539 0.94414 0.82917 1.00677 1.87920 1.22033 1.27293 1.95540 1.23117 0.81308 0.97184 1.01455 1.23346 0.96256 0.91563 0.86917 0.89756 1.22939 0.91769 0.99701 1.02403 1.22730 0.96930 0.99044 0.94990 0.89191 1.21444 0.94985 0.99483 0.98222 1.21573 0.98797 0.98736 0.96651 1.21508 0.92499 1.02776 0.98141 1.21413 0.98804 0.96933 0.97984 1.22521 0.85101 0.97404 0.94598 0.93385 1.88417 1.30722 1.79333 1.32626 0.92368 0.95304 0.95760 0.93744 0.93194 0.91983 0.92875 0.90153 0.93017 0.87541 0.89072 0.89838 0.91416 0.91594 0.90349 0.91900 0.90299 0.92333 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 2 C 0.00 0.02 5.47 84.65 0.46 0.48 16 3 Si 0.96 44.81 27.47 68.60 1.88 46.70 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.54 -32.73 9.66 25.60 0.25 -32.48 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.27 4.04 29.85 0.12 -0.15 16 10 C -0.10 -4.19 5.52 30.59 0.17 -4.02 16 11 C 0.07 2.46 5.94 71.98 0.43 2.89 16 12 O -0.41 -14.32 10.33 -147.19 -1.52 -15.84 16 13 C 0.05 1.15 5.51 71.98 0.40 1.55 16 14 C 0.08 1.75 3.80 31.41 0.12 1.87 16 15 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 16 C -0.13 -1.84 6.13 31.71 0.19 -1.64 16 17 C -0.12 -1.68 2.76 -10.02 -0.03 -1.70 16 18 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 19 C -0.10 -1.02 5.58 30.50 0.17 -0.85 16 20 C -0.12 -1.10 5.84 30.68 0.18 -0.92 16 21 C -0.11 -1.31 5.83 30.72 0.18 -1.14 16 22 C -0.11 -1.98 5.97 30.26 0.18 -1.80 16 23 C 0.06 1.25 2.80 30.80 0.09 1.34 16 24 H 0.05 1.00 7.81 -2.39 -0.02 0.99 16 25 O -0.39 -11.20 11.03 -146.81 -1.62 -12.82 16 26 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 27 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 28 H 0.02 1.12 7.57 -2.39 -0.02 1.11 16 29 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.10 7.85 -2.39 -0.02 1.08 16 37 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.07 0.68 7.96 -2.38 -0.02 0.66 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.19 8.13 -2.38 -0.02 1.17 16 Total: -1.00 -73.04 343.33 2.82 -70.22 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.87 Total: 9.60 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 2.91 Total: -36.57 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.30 Total: -61.30 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -3.14 Total: -28.65 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -73.04 2.82 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379197764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.091 kcal (2) G-P(sol) polarization free energy of solvation -73.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds