Wall clock time and date at job start Mon Mar 30 2020 06:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00252 * 2 1 4 4 C 1.46898 * 111.00099 * 123.95633 * 2 1 3 5 5 H 1.09002 * 109.47286 * 294.23144 * 4 2 1 6 6 C 1.52998 * 109.47259 * 54.22661 * 4 2 1 7 7 N 1.46900 * 109.47373 * 183.78415 * 6 4 2 8 8 C 1.46904 * 111.00086 * 185.21769 * 7 6 4 9 9 C 1.52996 * 109.47035 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47244 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99707 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00070 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99944 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47146 * 89.99793 * 14 12 10 16 16 H 1.48504 * 109.46670 * 209.99784 * 14 12 10 17 17 H 1.48495 * 109.47126 * 329.99456 * 14 12 10 18 18 C 1.50697 * 109.47407 * 174.22785 * 4 2 1 19 19 C 1.33390 * 125.20416 * 139.99756 * 18 4 2 20 20 C 1.38424 * 114.92273 * 179.97438 * 19 18 4 21 21 C 1.33386 * 114.91878 * 359.97438 * 20 19 18 22 22 S 1.75886 * 125.20239 * 319.69498 * 18 4 2 23 23 H 1.08994 * 109.46876 * 289.47954 * 1 2 3 24 24 H 1.09000 * 109.47021 * 49.47519 * 1 2 3 25 25 H 1.09000 * 109.47101 * 169.47661 * 1 2 3 26 26 H 1.08999 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47305 * 299.99693 * 3 2 1 28 28 H 1.08998 * 109.47420 * 60.00411 * 3 2 1 29 29 H 1.09002 * 109.47594 * 303.78396 * 6 4 2 30 30 H 1.09002 * 109.46981 * 63.78667 * 6 4 2 31 31 H 1.00891 * 111.00313 * 61.25753 * 7 6 4 32 32 H 1.09007 * 109.46777 * 299.99638 * 8 7 6 33 33 H 1.08995 * 109.47627 * 59.99546 * 8 7 6 34 34 H 1.09007 * 109.46960 * 299.99425 * 9 8 7 35 35 H 1.08997 * 109.47882 * 59.99339 * 9 8 7 36 36 H 0.96996 * 120.00016 * 180.02562 * 13 12 10 37 37 H 1.08005 * 122.54011 * 0.02562 * 19 18 4 38 38 H 1.07998 * 122.53912 * 180.02562 * 20 19 18 39 39 H 1.08005 * 125.20153 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.7319 -0.2626 2.0677 6 6 1.3910 -2.1715 1.1294 7 7 1.8467 -2.9074 2.3164 8 6 1.3864 -4.3020 2.2800 9 6 1.8788 -5.0343 3.5299 10 6 1.4061 -6.4648 3.4929 11 1 0.8134 -6.8163 2.6613 12 6 1.7304 -7.3248 4.5207 13 7 1.3175 -8.5730 4.4887 14 14 2.7550 -6.7165 5.9593 15 1 1.8576 -6.1871 7.0174 16 1 3.5563 -7.8407 6.5066 17 1 3.6658 -5.6384 5.4975 18 6 3.4952 -0.8635 1.0266 19 6 4.3498 -0.7637 2.0458 20 6 5.6850 -0.8863 1.7017 21 6 5.9145 -1.0863 0.4031 22 16 4.3860 -1.1340 -0.4657 23 1 -0.3633 0.3427 0.9688 24 1 -0.3633 0.6678 -0.7812 25 1 -0.3633 -1.0104 -0.1877 26 1 3.0851 1.3423 -0.0005 27 1 1.6461 1.8947 -0.8900 28 1 1.6461 1.8947 0.8900 29 1 0.3034 -2.0995 1.1420 30 1 1.7099 -2.6990 0.2304 31 1 1.5458 -2.4493 3.1635 32 1 0.2969 -4.3244 2.2518 33 1 1.7830 -4.7925 1.3912 34 1 2.9683 -5.0119 3.5585 35 1 1.4819 -4.5437 4.4186 36 1 1.5453 -9.1779 5.2119 37 1 4.0246 -0.6004 3.0627 38 1 6.4804 -0.8255 2.4297 39 1 6.8898 -1.2040 -0.0459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381473943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:15 Heat of formation + Delta-G solvation = 40.526960 kcal Electronic energy + Delta-G solvation = -18282.452786 eV Core-core repulsion = 15544.833447 eV Total energy + Delta-G solvation = -2737.619339 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.95762 -36.95232 -35.69353 -32.94423 -31.27168 -29.67354 -28.01756 -26.93925 -24.56382 -23.41541 -22.73586 -20.94545 -20.17915 -19.16736 -17.22602 -16.75925 -15.78814 -15.47838 -15.34807 -14.85279 -14.44396 -14.21932 -13.59827 -13.30432 -13.12520 -12.68241 -12.60534 -12.50263 -12.42998 -12.06416 -11.94252 -11.68062 -11.55823 -11.32404 -11.16811 -10.95628 -10.52440 -10.05042 -9.86256 -9.73082 -9.21237 -8.59284 -8.52026 -8.45236 -8.21517 -7.89822 -6.02829 -4.01002 1.19616 1.84314 2.25340 2.95328 3.32883 3.40561 3.47058 3.66092 4.47836 4.52964 4.89720 4.97379 5.07713 5.17979 5.21436 5.27759 5.31901 5.39159 5.44167 5.55587 5.70327 5.73723 5.75126 5.83070 5.96274 6.22316 6.25105 6.28872 6.45420 6.59567 6.78561 6.80103 6.86695 7.14378 7.38832 7.61848 7.76057 7.90822 8.54898 9.01403 9.59721 11.10598 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.004724 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.662954 B = 5925.239531 C = 6697.623127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.023 3.977 4 C 0.156 3.844 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.687 5.687 8 C 0.077 3.923 9 C -0.008 4.008 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.140 4.140 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.233 4.233 22 S 0.122 5.878 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.332 0.668 32 H 0.020 0.980 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.008 0.992 36 H 0.263 0.737 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 21.550 -8.774 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.266 5.266 3 C -0.125 4.125 4 C 0.046 3.954 5 H 0.074 0.926 6 C -0.064 4.064 7 N -0.318 5.318 8 C -0.051 4.051 9 C -0.046 4.046 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.187 1.187 18 C -0.258 4.258 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.369 4.369 22 S 0.385 5.615 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.202 20.793 -10.909 23.854 hybrid contribution -0.258 0.739 3.320 3.411 sum 3.945 21.532 -7.589 23.168 Atomic orbital electron populations 1.22450 0.86880 1.02967 1.00346 1.61963 1.08143 1.13953 1.42545 1.22426 1.01360 0.88267 1.00448 1.20107 0.88428 0.94896 0.91970 0.92603 1.21995 0.96263 0.92151 0.95980 1.60448 1.64316 1.03789 1.03254 1.21926 0.96393 0.85634 1.01108 1.19532 0.97195 0.95569 0.92330 1.21075 1.33825 0.93203 1.07802 0.91134 1.24998 0.95546 0.94691 0.98138 1.69916 1.46404 1.04775 1.33246 0.86757 0.81000 0.78716 0.82735 1.20443 1.21433 1.18734 1.24055 0.97685 1.07855 0.96207 1.19956 0.92149 1.04379 0.99583 1.20074 0.96901 1.03424 0.95685 1.25634 1.01748 1.11341 0.98160 1.84239 0.96176 1.70889 1.10209 0.95449 0.91269 0.90675 0.90951 0.91250 0.95706 0.94872 0.90251 0.85104 0.96130 0.91679 0.95630 0.97411 0.92749 0.84877 0.84912 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.89 60.06 0.53 0.74 16 2 N -0.54 -5.92 4.66 -244.60 -1.14 -7.06 16 3 C 0.02 0.22 9.36 60.06 0.56 0.78 16 4 C 0.16 1.93 2.16 -68.87 -0.15 1.78 16 5 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 6 C 0.07 0.94 4.78 -3.82 -0.02 0.92 16 7 N -0.69 -11.52 6.16 -113.78 -0.70 -12.22 16 8 C 0.08 1.58 5.62 -3.82 -0.02 1.56 16 9 C -0.01 -0.21 4.30 -27.88 -0.12 -0.33 16 10 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 14 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 18 C -0.14 -1.84 3.76 -36.00 -0.14 -1.98 16 19 C -0.13 -1.71 10.04 -41.21 -0.41 -2.13 16 20 C -0.13 -1.60 10.18 -41.21 -0.42 -2.02 16 21 C -0.23 -2.78 11.23 29.04 0.33 -2.45 16 22 S 0.12 1.53 22.62 -107.50 -2.43 -0.90 16 23 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 24 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 25 H 0.07 0.74 6.54 -51.93 -0.34 0.40 16 26 H 0.07 0.73 6.61 -51.93 -0.34 0.39 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.03 0.44 6.26 -51.93 -0.32 0.12 16 30 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 31 H 0.33 5.20 8.79 -39.30 -0.35 4.86 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.16 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -31.17 329.45 -9.84 -41.01 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.35 Total: 0.88 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.28 Total: -16.64 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.07 Total: -46.76 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.43 Total: -0.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.17 -9.84 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381473943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.533 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds