Wall clock time and date at job start Mon Mar 30 2020 06:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46893 * 111.00252 * 2 1 4 4 C 1.46898 * 111.00099 * 123.95633 * 2 1 3 5 5 H 1.09002 * 109.47286 * 294.23144 * 4 2 1 6 6 C 1.52998 * 109.47259 * 54.22661 * 4 2 1 7 7 N 1.46900 * 109.47373 * 183.78415 * 6 4 2 8 8 C 1.46904 * 111.00086 * 185.21769 * 7 6 4 9 9 C 1.52996 * 109.47035 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47244 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99707 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00070 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99944 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99938 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47146 * 89.99793 * 14 12 10 16 16 H 1.48504 * 109.46670 * 209.99784 * 14 12 10 17 17 H 1.48495 * 109.47126 * 329.99456 * 14 12 10 18 18 C 1.50697 * 109.47407 * 174.22785 * 4 2 1 19 19 C 1.33390 * 125.20416 * 139.99756 * 18 4 2 20 20 C 1.38424 * 114.92273 * 179.97438 * 19 18 4 21 21 C 1.33386 * 114.91878 * 359.97438 * 20 19 18 22 22 S 1.75886 * 125.20239 * 319.69498 * 18 4 2 23 23 H 1.08994 * 109.46876 * 289.47954 * 1 2 3 24 24 H 1.09000 * 109.47021 * 49.47519 * 1 2 3 25 25 H 1.09000 * 109.47101 * 169.47661 * 1 2 3 26 26 H 1.08999 * 109.47430 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47305 * 299.99693 * 3 2 1 28 28 H 1.08998 * 109.47420 * 60.00411 * 3 2 1 29 29 H 1.09002 * 109.47594 * 303.78396 * 6 4 2 30 30 H 1.09002 * 109.46981 * 63.78667 * 6 4 2 31 31 H 1.00891 * 111.00313 * 61.25753 * 7 6 4 32 32 H 1.09007 * 109.46777 * 299.99638 * 8 7 6 33 33 H 1.08995 * 109.47627 * 59.99546 * 8 7 6 34 34 H 1.09007 * 109.46960 * 299.99425 * 9 8 7 35 35 H 1.08997 * 109.47882 * 59.99339 * 9 8 7 36 36 H 0.96996 * 120.00016 * 180.02562 * 13 12 10 37 37 H 1.08005 * 122.54011 * 0.02562 * 19 18 4 38 38 H 1.07998 * 122.53912 * 180.02562 * 20 19 18 39 39 H 1.08005 * 125.20153 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.7319 -0.2626 2.0677 6 6 1.3910 -2.1715 1.1294 7 7 1.8467 -2.9074 2.3164 8 6 1.3864 -4.3020 2.2800 9 6 1.8788 -5.0343 3.5299 10 6 1.4061 -6.4648 3.4929 11 1 0.8134 -6.8163 2.6613 12 6 1.7304 -7.3248 4.5207 13 7 1.3175 -8.5730 4.4887 14 14 2.7550 -6.7165 5.9593 15 1 1.8576 -6.1871 7.0174 16 1 3.5563 -7.8407 6.5066 17 1 3.6658 -5.6384 5.4975 18 6 3.4952 -0.8635 1.0266 19 6 4.3498 -0.7637 2.0458 20 6 5.6850 -0.8863 1.7017 21 6 5.9145 -1.0863 0.4031 22 16 4.3860 -1.1340 -0.4657 23 1 -0.3633 0.3427 0.9688 24 1 -0.3633 0.6678 -0.7812 25 1 -0.3633 -1.0104 -0.1877 26 1 3.0851 1.3423 -0.0005 27 1 1.6461 1.8947 -0.8900 28 1 1.6461 1.8947 0.8900 29 1 0.3034 -2.0995 1.1420 30 1 1.7099 -2.6990 0.2304 31 1 1.5458 -2.4493 3.1635 32 1 0.2969 -4.3244 2.2518 33 1 1.7830 -4.7925 1.3912 34 1 2.9683 -5.0119 3.5585 35 1 1.4819 -4.5437 4.4186 36 1 1.5453 -9.1779 5.2119 37 1 4.0246 -0.6004 3.0627 38 1 6.4804 -0.8255 2.4297 39 1 6.8898 -1.2040 -0.0459 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381473943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:14 Heat of formation + Delta-G solvation = 19.277229 kcal Electronic energy + Delta-G solvation = -18283.374243 eV Core-core repulsion = 15544.833447 eV Total energy + Delta-G solvation = -2738.540796 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91689 -37.89757 -37.10973 -34.95716 -32.74313 -31.05845 -29.07103 -27.90190 -26.14067 -24.33585 -24.04713 -22.42483 -21.53900 -20.11591 -18.96175 -18.18333 -16.78259 -16.68973 -16.43173 -16.25249 -15.87208 -15.28200 -14.94084 -14.71772 -14.55732 -14.39287 -13.61862 -13.52487 -13.39273 -13.27626 -13.02444 -12.88497 -12.78081 -12.53449 -12.35034 -12.31893 -11.89041 -11.74086 -11.60486 -11.46705 -11.42674 -10.76865 -9.46398 -9.38520 -9.27515 -9.15623 -8.30009 -6.34583 0.24682 0.90104 1.31077 1.35972 1.39170 1.52207 2.00201 2.36827 2.73943 3.05767 3.41596 3.83967 3.97926 4.19775 4.31689 4.36029 4.44126 4.46867 4.48370 4.61993 4.65017 4.70055 4.79209 4.83307 4.91088 4.95490 5.02863 5.04038 5.27486 5.32092 5.48189 5.52139 5.63448 5.68056 5.95602 6.03413 6.13354 6.25230 6.52479 6.74082 7.30401 8.86830 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.004724 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.662954 B = 5925.239531 C = 6697.623127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.026 3.974 4 C 0.165 3.835 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.685 5.685 8 C 0.092 3.908 9 C -0.001 4.001 10 C -0.534 4.534 11 H 0.031 0.969 12 C 0.006 3.994 13 N -0.951 5.951 14 Si 0.954 3.046 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.249 1.249 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.233 4.233 22 S 0.107 5.893 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.342 0.658 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.267 0.733 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 23.735 -8.024 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.276 5.276 3 C -0.122 4.122 4 C 0.054 3.946 5 H 0.079 0.921 6 C -0.058 4.058 7 N -0.317 5.317 8 C -0.037 4.037 9 C -0.039 4.039 10 C -0.573 4.573 11 H 0.049 0.951 12 C -0.191 4.191 13 N -0.592 5.592 14 Si 0.777 3.223 15 H -0.189 1.189 16 H -0.210 1.210 17 H -0.172 1.172 18 C -0.269 4.269 19 C -0.171 4.171 20 C -0.173 4.173 21 C -0.368 4.368 22 S 0.370 5.630 23 H 0.050 0.950 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.028 23.009 -10.174 25.656 hybrid contribution -0.557 0.047 2.987 3.039 sum 4.470 23.056 -7.187 24.560 Atomic orbital electron populations 1.22487 0.85933 1.03006 1.01234 1.61953 1.09058 1.14761 1.41799 1.22428 1.00811 0.87504 1.01445 1.19950 0.88022 0.93783 0.92839 0.92119 1.21956 0.97004 0.92838 0.94039 1.60305 1.64391 1.02214 1.04747 1.21561 0.95985 0.87515 0.98601 1.19398 0.96641 0.93241 0.94603 1.21415 1.33340 0.95856 1.06662 0.95089 1.25992 0.96902 0.94688 1.01481 1.70067 1.48115 1.06366 1.34644 0.85606 0.79416 0.78533 0.78764 1.18917 1.21022 1.17210 1.24194 0.98108 1.08299 0.96325 1.20176 0.92665 1.04395 0.99885 1.20326 0.97143 1.03495 0.96293 1.25936 1.02236 1.10588 0.98066 1.84262 0.97020 1.71105 1.10595 0.94966 0.89630 0.91414 0.91822 0.89788 0.95110 0.93769 0.91821 0.83995 0.96367 0.93137 0.96140 0.96186 0.92439 0.84364 0.83223 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 8.89 127.69 1.13 1.49 16 2 N -0.55 -11.10 4.66 -927.78 -4.32 -15.42 16 3 C 0.03 0.44 9.36 127.69 1.20 1.64 16 4 C 0.16 3.81 2.16 44.17 0.10 3.90 16 5 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 6 C 0.07 1.95 4.78 86.30 0.41 2.36 16 7 N -0.69 -22.01 6.16 -513.88 -3.16 -25.17 16 8 C 0.09 3.73 5.62 86.30 0.48 4.22 16 9 C 0.00 -0.05 4.30 29.85 0.13 0.08 16 10 C -0.53 -31.45 9.66 25.60 0.25 -31.20 16 11 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 12 C 0.01 0.37 5.47 84.65 0.46 0.83 16 13 N -0.95 -60.47 13.96 21.45 0.30 -60.18 16 14 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 15 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 18 C -0.15 -3.77 3.76 24.59 0.09 -3.68 16 19 C -0.14 -3.46 10.04 21.22 0.21 -3.25 16 20 C -0.14 -3.24 10.18 21.22 0.22 -3.03 16 21 C -0.23 -5.15 11.23 66.72 0.75 -4.40 16 22 S 0.11 2.58 22.62 -56.49 -1.28 1.30 16 23 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 24 H 0.09 1.15 8.05 -2.39 -0.02 1.13 16 25 H 0.07 1.23 6.54 -2.39 -0.02 1.21 16 26 H 0.06 1.19 6.61 -2.39 -0.02 1.17 16 27 H 0.08 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.04 1.12 6.26 -2.39 -0.01 1.11 16 30 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 31 H 0.34 9.98 8.79 -89.70 -0.79 9.19 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.02 1.00 7.20 -2.38 -0.02 0.98 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -66.84 329.45 -0.97 -67.81 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.18 Total: 15.80 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 5.43 Total: -31.04 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -7.19 Total: -100.77 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.28 Total: 1.30 kcal Total: -66.84 -0.97 -67.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381473943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.091 kcal (2) G-P(sol) polarization free energy of solvation -66.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds