Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 H 1.08999 * 109.47228 * 305.57029 * 3 2 1 5 5 N 1.46897 * 109.47192 * 185.57208 * 3 2 1 6 6 C 1.46905 * 111.00177 * 85.93430 * 5 3 2 7 7 C 1.52998 * 109.47365 * 175.51120 * 6 5 3 8 8 C 1.52998 * 109.47223 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00265 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99896 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00293 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47348 * 90.00075 * 13 11 9 15 15 H 1.48500 * 109.47442 * 209.99975 * 13 11 9 16 16 H 1.48500 * 109.47035 * 330.00116 * 13 11 9 17 17 C 1.50700 * 109.47588 * 65.57098 * 3 2 1 18 18 N 1.29028 * 124.91729 * 75.02170 * 17 3 2 19 19 C 1.31779 * 117.12981 * 179.97438 * 18 17 3 20 20 C 1.33638 * 114.49543 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.03435 * 180.02562 * 20 19 18 22 22 S 1.70974 * 124.91745 * 254.72632 * 17 3 2 23 23 H 1.08997 * 109.46785 * 294.57851 * 1 2 3 24 24 H 1.09002 * 109.46693 * 174.58683 * 1 2 3 25 25 H 1.08994 * 109.47237 * 54.58333 * 1 2 3 26 26 H 1.09004 * 109.47026 * 119.99889 * 2 1 3 27 27 H 1.08998 * 109.47168 * 239.99872 * 2 1 3 28 28 H 1.00905 * 111.00134 * 209.88478 * 5 3 2 29 29 H 1.08999 * 109.47094 * 295.51725 * 6 5 3 30 30 H 1.09009 * 109.46783 * 55.50955 * 6 5 3 31 31 H 1.09001 * 109.46849 * 300.00018 * 7 6 5 32 32 H 1.08997 * 109.46914 * 59.99995 * 7 6 5 33 33 H 1.09001 * 109.46943 * 299.99618 * 8 7 6 34 34 H 1.08997 * 109.47459 * 59.99987 * 8 7 6 35 35 H 0.96994 * 120.00445 * 179.97438 * 12 11 9 36 36 H 1.08000 * 122.75147 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47746 * 90.02062 * 21 20 19 38 38 H 1.09003 * 109.47335 * 210.02054 * 21 20 19 39 39 H 1.09004 * 109.47357 * 330.02140 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9843 -0.8359 5 7 3.5028 1.4446 -0.1345 6 6 3.9017 1.3925 -1.5474 7 6 5.4236 1.5091 -1.6523 8 6 5.8390 1.4555 -3.1238 9 6 7.3381 1.5697 -3.2271 10 1 7.9349 1.6709 -2.3327 11 6 7.9478 1.5451 -4.4635 12 7 7.2211 1.4213 -5.5527 13 14 9.8059 1.6874 -4.5916 14 1 10.4108 0.3321 -4.5424 15 1 10.1649 2.3432 -5.8747 16 1 10.3193 2.5000 -3.4597 17 6 1.6535 2.1120 1.2936 18 7 2.2199 1.8995 2.4332 19 6 1.7578 2.5712 3.4685 20 6 0.7448 3.3960 3.1865 21 6 0.0245 4.2835 4.1686 22 16 0.4056 3.2686 1.4622 23 1 -0.3633 0.4274 0.9345 24 1 -0.3633 -1.0231 -0.0970 25 1 -0.3633 0.5955 -0.8374 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.9071 2.2463 0.3260 29 1 3.5790 0.4462 -1.9813 30 1 3.4360 2.2173 -2.0870 31 1 5.7462 2.4556 -1.2183 32 1 5.8892 0.6845 -1.1127 33 1 5.5163 0.5093 -3.5582 34 1 5.3734 2.2804 -3.6631 35 1 7.6500 1.4043 -6.4225 36 1 2.1639 2.4634 4.4634 37 1 0.5195 5.2535 4.2128 38 1 -1.0086 4.4171 3.8477 39 1 0.0414 3.8217 5.1559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381489865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = 17.312779 kcal Electronic energy + Delta-G solvation = -17651.726581 eV Core-core repulsion = 14913.100600 eV Total energy + Delta-G solvation = -2738.625981 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99852 -37.24668 -34.40315 -32.78011 -32.46424 -30.71646 -28.17566 -26.18012 -24.93322 -23.93413 -22.50764 -21.51480 -20.21864 -18.70887 -18.22903 -16.31274 -15.80911 -15.39867 -15.21168 -14.68670 -14.45588 -14.26469 -13.87527 -13.63723 -13.24514 -13.01747 -12.85906 -12.61600 -12.24730 -11.89307 -11.56997 -11.45802 -11.38292 -11.27670 -10.90117 -10.72825 -10.52596 -10.47365 -9.69826 -9.65561 -9.37088 -9.31849 -9.05092 -8.89145 -8.31394 -8.18419 -5.96695 -3.98524 0.52100 1.13209 1.56826 2.71667 3.34864 3.40699 3.44639 3.96942 4.32932 4.50738 4.66331 4.76981 4.85106 5.03104 5.13690 5.15526 5.34183 5.39178 5.42497 5.43857 5.59260 5.67254 5.79143 5.90091 5.95821 6.00859 6.12597 6.28933 6.37755 6.73793 6.78060 7.15887 7.29478 7.60063 7.67981 7.71819 7.86630 8.03896 8.47364 9.08674 9.65350 11.14798 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.003235 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.934022 B = 8652.459587 C = 9123.323383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C 0.166 3.834 4 H 0.061 0.939 5 N -0.670 5.670 6 C 0.057 3.943 7 C -0.107 4.107 8 C 0.023 3.977 9 C -0.518 4.518 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.053 3.947 18 N -0.448 5.448 19 C 0.033 3.967 20 C -0.230 4.230 21 C -0.073 4.073 22 S 0.109 5.891 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.343 0.657 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.260 0.740 36 H 0.174 0.826 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.295 3.597 16.843 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C 0.053 3.947 4 H 0.078 0.922 5 N -0.303 5.303 6 C -0.071 4.071 7 C -0.145 4.145 8 C -0.015 4.015 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.225 4.225 18 N -0.161 5.161 19 C -0.118 4.118 20 C -0.351 4.351 21 C -0.133 4.133 22 S 0.364 5.636 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.162 0.838 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.191 0.809 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.483 3.003 16.078 24.681 hybrid contribution 1.189 0.918 0.413 1.558 sum -17.295 3.921 16.490 24.216 Atomic orbital electron populations 1.21848 0.96018 1.02008 1.01445 1.21518 0.94655 0.94510 1.03921 1.20249 0.90579 0.95702 0.88215 0.92171 1.60609 1.05178 1.48703 1.15789 1.22275 0.98398 1.00411 0.86037 1.21636 0.91285 1.00661 1.00961 1.19059 0.96038 0.97154 0.89227 1.21264 0.92385 1.49684 0.92322 0.92662 1.25027 0.98164 0.95409 0.95929 1.69964 1.35203 1.50796 0.97703 0.86596 0.85855 0.78207 0.77363 1.20648 1.21279 1.19885 1.27191 0.97454 0.99408 0.98476 1.66216 1.28023 1.24025 0.97842 1.21794 0.95451 0.95417 0.99110 1.25999 1.04504 1.07080 0.97530 1.20210 0.99174 0.97640 0.96245 1.84015 1.36071 1.39382 1.04177 0.93239 0.92162 0.92656 0.90550 0.90420 0.83798 0.91081 0.95626 0.93688 0.92346 0.96499 0.96812 0.93057 0.80947 0.90585 0.91214 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.64 37.16 0.36 -1.21 16 2 C -0.11 -1.32 5.64 -26.73 -0.15 -1.47 16 3 C 0.17 2.21 2.59 -68.87 -0.18 2.03 16 4 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 5 N -0.67 -10.53 6.31 -107.95 -0.68 -11.21 16 6 C 0.06 1.00 5.53 -3.82 -0.02 0.98 16 7 C -0.11 -2.28 5.37 -26.73 -0.14 -2.42 16 8 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 9 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 10 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.05 0.68 4.99 -13.46 -0.07 0.61 16 18 N -0.45 -6.12 10.50 -11.86 -0.12 -6.25 16 19 C 0.03 0.37 11.25 -19.19 -0.22 0.15 16 20 C -0.23 -2.20 6.60 -35.92 -0.24 -2.43 16 21 C -0.07 -0.45 10.42 36.01 0.38 -0.08 16 22 S 0.11 1.12 23.13 -107.50 -2.49 -1.37 16 23 H 0.05 0.50 7.53 -51.93 -0.39 0.11 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 28 H 0.34 5.47 8.28 -39.29 -0.33 5.14 16 29 H 0.07 1.24 7.52 -51.93 -0.39 0.85 16 30 H 0.03 0.44 7.94 -51.92 -0.41 0.03 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -31.37 337.65 -9.82 -41.19 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.50 Total: -0.71 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.83 Total: -17.16 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: -0.07 Total: -44.05 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.37 -9.82 -41.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381489865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.500 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds