Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47082 * 2 1 4 4 H 1.08999 * 109.47228 * 305.57029 * 3 2 1 5 5 N 1.46897 * 109.47192 * 185.57208 * 3 2 1 6 6 C 1.46905 * 111.00177 * 85.93430 * 5 3 2 7 7 C 1.52998 * 109.47365 * 175.51120 * 6 5 3 8 8 C 1.52998 * 109.47223 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00265 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99896 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00293 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00175 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47348 * 90.00075 * 13 11 9 15 15 H 1.48500 * 109.47442 * 209.99975 * 13 11 9 16 16 H 1.48500 * 109.47035 * 330.00116 * 13 11 9 17 17 C 1.50700 * 109.47588 * 65.57098 * 3 2 1 18 18 N 1.29028 * 124.91729 * 75.02170 * 17 3 2 19 19 C 1.31779 * 117.12981 * 179.97438 * 18 17 3 20 20 C 1.33638 * 114.49543 * 0.02562 * 19 18 17 21 21 C 1.50699 * 126.03435 * 180.02562 * 20 19 18 22 22 S 1.70974 * 124.91745 * 254.72632 * 17 3 2 23 23 H 1.08997 * 109.46785 * 294.57851 * 1 2 3 24 24 H 1.09002 * 109.46693 * 174.58683 * 1 2 3 25 25 H 1.08994 * 109.47237 * 54.58333 * 1 2 3 26 26 H 1.09004 * 109.47026 * 119.99889 * 2 1 3 27 27 H 1.08998 * 109.47168 * 239.99872 * 2 1 3 28 28 H 1.00905 * 111.00134 * 209.88478 * 5 3 2 29 29 H 1.08999 * 109.47094 * 295.51725 * 6 5 3 30 30 H 1.09009 * 109.46783 * 55.50955 * 6 5 3 31 31 H 1.09001 * 109.46849 * 300.00018 * 7 6 5 32 32 H 1.08997 * 109.46914 * 59.99995 * 7 6 5 33 33 H 1.09001 * 109.46943 * 299.99618 * 8 7 6 34 34 H 1.08997 * 109.47459 * 59.99987 * 8 7 6 35 35 H 0.96994 * 120.00445 * 179.97438 * 12 11 9 36 36 H 1.08000 * 122.75147 * 179.97438 * 19 18 17 37 37 H 1.09000 * 109.47746 * 90.02062 * 21 20 19 38 38 H 1.09003 * 109.47335 * 210.02054 * 21 20 19 39 39 H 1.09004 * 109.47357 * 330.02140 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9843 -0.8359 5 7 3.5028 1.4446 -0.1345 6 6 3.9017 1.3925 -1.5474 7 6 5.4236 1.5091 -1.6523 8 6 5.8390 1.4555 -3.1238 9 6 7.3381 1.5697 -3.2271 10 1 7.9349 1.6709 -2.3327 11 6 7.9478 1.5451 -4.4635 12 7 7.2211 1.4213 -5.5527 13 14 9.8059 1.6874 -4.5916 14 1 10.4108 0.3321 -4.5424 15 1 10.1649 2.3432 -5.8747 16 1 10.3193 2.5000 -3.4597 17 6 1.6535 2.1120 1.2936 18 7 2.2199 1.8995 2.4332 19 6 1.7578 2.5712 3.4685 20 6 0.7448 3.3960 3.1865 21 6 0.0245 4.2835 4.1686 22 16 0.4056 3.2686 1.4622 23 1 -0.3633 0.4274 0.9345 24 1 -0.3633 -1.0231 -0.0970 25 1 -0.3633 0.5955 -0.8374 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.9071 2.2463 0.3260 29 1 3.5790 0.4462 -1.9813 30 1 3.4360 2.2173 -2.0870 31 1 5.7462 2.4556 -1.2183 32 1 5.8892 0.6845 -1.1127 33 1 5.5163 0.5093 -3.5582 34 1 5.3734 2.2804 -3.6631 35 1 7.6500 1.4043 -6.4225 36 1 2.1639 2.4634 4.4634 37 1 0.5195 5.2535 4.2128 38 1 -1.0086 4.4171 3.8477 39 1 0.0414 3.8217 5.1559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381489865.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -2.372185 kcal Electronic energy + Delta-G solvation = -17652.580185 eV Core-core repulsion = 14913.100600 eV Total energy + Delta-G solvation = -2739.479585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88247 -38.42438 -36.08216 -34.47077 -33.23983 -32.34249 -29.33941 -27.64455 -26.06111 -24.85895 -24.16703 -22.49258 -22.00227 -19.63437 -19.12396 -18.45629 -16.95421 -16.58797 -16.48840 -16.16098 -15.68418 -15.45442 -14.96456 -14.65179 -14.24974 -14.01803 -13.90187 -13.69722 -13.60184 -13.39056 -13.09410 -12.71521 -12.68294 -12.51706 -12.35524 -12.13286 -12.05197 -11.83066 -11.51163 -11.40503 -11.13797 -10.55208 -10.53219 -10.18113 -9.72416 -9.43912 -8.20262 -6.31089 -0.31078 0.32293 0.74009 1.39809 1.41345 1.52503 1.85992 2.41026 3.05189 3.12758 3.16934 3.82079 4.01359 4.05610 4.23275 4.25404 4.27699 4.34806 4.44667 4.49872 4.69885 4.72207 4.84228 4.89344 4.95149 5.01873 5.07819 5.14919 5.18795 5.22543 5.27031 5.38024 5.51634 5.74566 5.85566 5.98000 6.26603 6.32231 6.82555 6.85458 7.37957 8.91658 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.003235 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.934022 B = 8652.459587 C = 9123.323383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.165 3.835 4 H 0.067 0.933 5 N -0.675 5.675 6 C 0.072 3.928 7 C -0.093 4.093 8 C 0.027 3.973 9 C -0.544 4.544 10 H 0.057 0.943 11 C 0.000 4.000 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.027 3.973 18 N -0.476 5.476 19 C 0.009 3.991 20 C -0.215 4.215 21 C -0.075 4.075 22 S 0.135 5.865 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.341 0.659 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.052 0.948 33 H -0.006 1.006 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.191 0.809 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.868 4.469 18.178 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C 0.053 3.947 4 H 0.085 0.915 5 N -0.307 5.307 6 C -0.057 4.057 7 C -0.131 4.131 8 C -0.010 4.010 9 C -0.582 4.582 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.251 4.251 18 N -0.190 5.190 19 C -0.141 4.141 20 C -0.337 4.337 21 C -0.134 4.134 22 S 0.390 5.610 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.160 0.840 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.013 0.987 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.208 0.792 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.067 3.869 17.425 26.118 hybrid contribution 1.289 0.689 0.055 1.463 sum -17.778 4.559 17.481 25.346 Atomic orbital electron populations 1.21788 0.94052 1.02939 1.01799 1.21474 0.96350 0.93779 1.02697 1.20257 0.88760 0.96496 0.89229 0.91522 1.60531 1.07300 1.48751 1.14084 1.21975 0.95695 1.00498 0.87542 1.21380 0.93964 1.00444 0.97299 1.18947 0.95020 0.94970 0.92090 1.21697 0.93823 1.49991 0.92736 0.92456 1.25975 1.03615 0.94746 0.95472 1.70089 1.37486 1.51395 0.98336 0.85450 0.79281 0.78604 0.77739 1.19749 1.20542 1.18872 1.26952 0.99174 1.00992 0.97968 1.66183 1.29096 1.25067 0.98681 1.22103 0.96471 0.96164 0.99381 1.26488 1.03478 1.06120 0.97601 1.20390 0.99411 0.97487 0.96126 1.83857 1.34493 1.37830 1.04829 0.93246 0.91076 0.91740 0.92146 0.91175 0.84009 0.91174 0.95335 0.93473 0.92967 0.98747 0.98867 0.92719 0.79250 0.89450 0.90068 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.64 71.98 0.69 -2.12 16 2 C -0.10 -2.55 5.64 30.59 0.17 -2.37 16 3 C 0.17 4.36 2.59 44.17 0.11 4.47 16 4 H 0.07 1.66 7.71 -2.39 -0.02 1.64 16 5 N -0.67 -21.30 6.31 -495.45 -3.12 -24.43 16 6 C 0.07 2.55 5.53 86.30 0.48 3.03 16 7 C -0.09 -4.01 5.37 30.59 0.16 -3.84 16 8 C 0.03 1.48 4.97 29.85 0.15 1.63 16 9 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 11 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 12 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 13 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 17 C 0.03 0.67 4.99 88.52 0.44 1.11 16 18 N -0.48 -12.79 10.50 -191.45 -2.01 -14.80 16 19 C 0.01 0.19 11.25 83.66 0.94 1.13 16 20 C -0.22 -3.66 6.60 24.64 0.16 -3.50 16 21 C -0.08 -0.69 10.42 71.24 0.74 0.05 16 22 S 0.14 2.57 23.13 -56.49 -1.31 1.26 16 23 H 0.05 0.94 7.53 -2.39 -0.02 0.92 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.07 1.80 7.48 -2.39 -0.02 1.78 16 28 H 0.34 10.93 8.28 -89.69 -0.74 10.19 16 29 H 0.07 2.50 7.52 -2.39 -0.02 2.48 16 30 H 0.03 0.99 7.94 -2.38 -0.02 0.97 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -67.58 337.65 0.90 -66.68 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.28 Total: 13.08 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 4.75 Total: -31.70 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -4.85 Total: -96.53 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.31 Total: 1.26 kcal Total: -67.58 0.90 -66.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381489865.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.308 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds