Wall clock time and date at job start Mon Mar 30 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54518 * 109.47373 * 2 1 4 4 C 1.53285 * 107.24675 * 306.56861 * 3 2 1 5 5 C 1.51948 * 107.88704 * 187.53638 * 3 2 1 6 6 C 1.52418 * 114.86779 * 202.15056 * 5 3 2 7 7 C 1.52777 * 110.58609 * 280.63519 * 6 5 3 8 8 C 1.53137 * 110.17470 * 186.13564 * 7 6 5 9 9 C 1.53058 * 109.41811 * 56.22561 * 8 7 6 10 10 C 1.53122 * 108.93482 * 303.47675 * 9 8 7 11 11 H 1.08944 * 109.51491 * 297.23526 * 10 9 8 12 12 C 1.50815 * 109.30428 * 177.61218 * 10 9 8 13 13 H 1.08006 * 119.99866 * 359.79789 * 12 10 9 14 14 C 1.37877 * 120.00413 * 179.80436 * 12 10 9 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 O 1.42582 * 109.31950 * 57.77639 * 10 9 8 21 21 C 1.52712 * 110.98863 * 43.33539 * 6 5 3 22 22 C 1.53092 * 109.15607 * 306.08144 * 21 6 5 23 23 O 1.41935 * 107.56221 * 64.99641 * 3 2 1 24 24 H 1.08998 * 109.46843 * 59.99899 * 1 2 3 25 25 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46960 * 300.00348 * 1 2 3 27 27 H 1.09003 * 109.47455 * 239.99780 * 2 1 3 28 28 H 1.09001 * 109.47238 * 119.99458 * 2 1 3 29 29 H 1.08992 * 109.47288 * 176.75516 * 4 3 2 30 30 H 1.09004 * 109.47030 * 296.76108 * 4 3 2 31 31 H 1.09001 * 109.46759 * 56.75305 * 4 3 2 32 32 H 1.10040 * 108.85343 * 80.22469 * 5 3 2 33 33 H 1.10001 * 108.96283 * 324.27474 * 5 3 2 34 34 H 1.09158 * 109.48687 * 306.36976 * 7 6 5 35 35 H 1.09039 * 110.06414 * 66.41457 * 7 6 5 36 36 H 1.09204 * 109.31454 * 175.95941 * 8 7 6 37 37 H 1.08918 * 109.82778 * 295.69676 * 8 7 6 38 38 H 1.08967 * 109.64692 * 183.61170 * 9 8 7 39 39 H 1.08981 * 109.61337 * 63.26958 * 9 8 7 40 40 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 41 41 H 1.09171 * 109.58644 * 65.75390 * 21 6 5 42 42 H 1.08931 * 110.17096 * 185.92718 * 21 6 5 43 43 H 1.09357 * 109.02909 * 180.48733 * 22 21 6 44 44 H 1.08722 * 109.91454 * 299.79015 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0451 1.4568 0.0000 4 6 1.3743 2.1760 -1.1757 5 6 3.5522 1.4189 -0.1897 6 6 4.2911 2.6593 0.2988 7 6 4.1772 3.7895 -0.7228 8 6 5.0462 4.9762 -0.2965 9 6 6.4916 4.5080 -0.1115 10 6 6.5171 3.3646 0.9065 11 1 6.1658 3.7285 1.8714 12 6 7.9300 2.8574 1.0515 13 1 8.7258 3.3036 0.4735 14 6 8.2058 1.8242 1.9217 15 7 7.2368 1.2811 2.6258 16 14 9.9557 1.1957 2.1006 17 1 10.1922 0.1041 1.1218 18 1 10.1575 0.6779 3.4777 19 1 10.9089 2.3052 1.8444 20 8 5.6766 2.3073 0.4496 21 6 3.7564 3.1160 1.6544 22 6 2.2397 3.3008 1.5599 23 8 1.6486 2.0512 1.2264 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6687 3.2254 -1.1755 30 1 1.6857 1.7114 -2.1113 31 1 0.2913 2.1025 -1.0765 32 1 3.7726 1.2783 -1.2585 33 1 3.9563 0.5399 0.3339 34 1 4.5086 3.4322 -1.6996 35 1 3.1423 4.1249 -0.7958 36 1 5.0112 5.7459 -1.0704 37 1 4.6715 5.3917 0.6379 38 1 7.1006 5.3346 0.2534 39 1 6.8868 4.1558 -1.0641 40 1 6.3281 1.6073 2.5326 41 1 3.9816 2.3608 2.4100 42 1 4.2187 4.0595 1.9420 43 1 1.8602 3.6362 2.5291 44 1 2.0041 4.0522 0.8103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383734476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:31 Heat of formation + Delta-G solvation = -118.708042 kcal Electronic energy + Delta-G solvation = -22945.859336 eV Core-core repulsion = 19862.122522 eV Total energy + Delta-G solvation = -3083.736814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.29270 -37.88683 -34.49355 -33.51428 -32.66720 -31.61059 -29.92638 -28.31521 -27.40291 -25.02211 -23.74659 -23.54646 -22.07856 -20.88180 -19.46480 -17.81128 -17.12007 -16.29825 -15.89327 -14.80044 -14.71076 -14.41935 -14.16191 -14.01020 -13.90321 -13.69097 -13.42326 -13.11685 -12.63741 -12.19951 -12.03652 -11.73796 -11.66035 -11.46233 -11.27956 -11.15534 -11.03228 -10.85961 -10.76241 -10.55492 -10.43002 -10.33163 -10.13517 -10.06412 -9.74118 -9.41043 -9.21900 -8.56191 -8.30125 -8.05928 -6.32446 -4.11078 3.45408 3.48264 3.63867 3.92198 4.50576 4.60210 4.90756 5.02067 5.09103 5.21640 5.33465 5.35910 5.38512 5.41041 5.51493 5.61247 5.63343 5.64896 5.72963 5.73611 5.85079 5.91850 5.98205 6.04465 6.10877 6.13749 6.18346 6.21784 6.31346 6.33057 6.40381 6.49310 6.53299 6.60581 6.69691 6.78123 6.83026 6.89057 7.33093 7.68520 8.13744 8.41057 8.80033 8.93093 9.71101 11.08058 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.006334 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.530023 B = 4419.446162 C = 5023.804889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.131 3.869 4 C -0.180 4.180 5 C -0.130 4.130 6 C 0.122 3.878 7 C -0.136 4.136 8 C -0.122 4.122 9 C -0.137 4.137 10 C 0.203 3.797 11 H 0.009 0.991 12 C -0.602 4.602 13 H 0.055 0.945 14 C 0.032 3.968 15 N -0.890 5.890 16 Si 1.070 2.930 17 H -0.287 1.287 18 H -0.284 1.284 19 H -0.289 1.289 20 O -0.366 6.366 21 C -0.176 4.176 22 C 0.069 3.931 23 O -0.373 6.373 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.281 0.719 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 2.584 -5.689 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.092 3.908 4 C -0.237 4.237 5 C -0.167 4.167 6 C 0.082 3.918 7 C -0.174 4.174 8 C -0.160 4.160 9 C -0.175 4.175 10 C 0.148 3.852 11 H 0.026 0.974 12 C -0.639 4.639 13 H 0.073 0.927 14 C -0.176 4.176 15 N -0.525 5.525 16 Si 0.898 3.102 17 H -0.214 1.214 18 H -0.210 1.210 19 H -0.215 1.215 20 O -0.286 6.286 21 C -0.214 4.214 22 C -0.008 4.008 23 O -0.292 6.292 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.265 1.203 -4.826 12.314 hybrid contribution -0.721 1.646 -1.070 2.092 sum -11.985 2.849 -5.895 13.657 Atomic orbital electron populations 1.21817 0.95663 1.01010 1.02230 1.21934 0.96261 0.94289 1.02601 1.21218 0.92519 0.92894 0.84195 1.22670 1.01422 1.01221 0.98376 1.21916 0.93172 0.99312 1.02345 1.20856 0.86479 0.92291 0.92210 1.22165 0.99086 0.96533 0.99586 1.21645 0.97172 0.96854 1.00287 1.22109 0.94028 0.99905 1.01422 1.19823 0.90219 0.84698 0.90502 0.97384 1.21952 0.90792 1.23305 1.27855 0.92651 1.25833 1.05562 0.93655 0.92585 1.70627 1.02778 1.40568 1.38484 0.83548 0.74135 0.75916 0.76566 1.21390 1.20958 1.21481 1.88467 1.13877 1.39249 1.87039 1.22685 0.95886 1.03200 0.99587 1.22388 0.92782 0.85635 0.99946 1.87359 1.67028 1.35906 1.38891 0.92616 0.93243 0.92010 0.91013 0.91107 0.92335 0.91818 0.91557 0.91282 0.90333 0.91898 0.92329 0.93177 0.92613 0.92535 0.92501 0.90759 0.90225 0.90761 0.89457 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.24 37.15 0.34 -1.34 16 2 C -0.11 -1.49 4.92 -25.94 -0.13 -1.62 16 3 C 0.13 1.93 0.80 -90.21 -0.07 1.86 16 4 C -0.18 -2.23 7.90 37.31 0.29 -1.94 16 5 C -0.13 -2.29 3.91 -27.56 -0.11 -2.40 16 6 C 0.12 2.38 0.78 -91.18 -0.07 2.31 16 7 C -0.14 -2.34 4.39 -26.78 -0.12 -2.46 16 8 C -0.12 -2.15 5.67 -26.63 -0.15 -2.30 16 9 C -0.14 -2.94 5.37 -26.64 -0.14 -3.08 16 10 C 0.20 5.19 1.76 -27.76 -0.05 5.14 16 11 H 0.01 0.23 6.45 -51.96 -0.34 -0.10 16 12 C -0.60 -17.26 8.79 -34.38 -0.30 -17.57 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 14 C 0.03 0.93 5.40 -17.82 -0.10 0.84 16 15 N -0.89 -27.19 13.53 55.43 0.75 -26.44 16 16 Si 1.07 25.45 29.90 -169.99 -5.08 20.36 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 O -0.37 -9.21 8.39 -35.23 -0.30 -9.50 16 21 C -0.18 -3.28 4.26 -26.83 -0.11 -3.39 16 22 C 0.07 1.05 6.53 37.20 0.24 1.29 16 23 O -0.37 -5.95 9.30 -35.23 -0.33 -6.27 16 24 H 0.05 0.57 6.11 -51.93 -0.32 0.25 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 27 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.74 5.05 -51.93 -0.26 0.48 16 30 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 31 H 0.07 0.75 5.94 -51.93 -0.31 0.44 16 32 H 0.07 1.16 7.71 -51.34 -0.40 0.76 16 33 H 0.08 1.57 7.85 -51.36 -0.40 1.16 16 34 H 0.06 1.10 8.05 -51.84 -0.42 0.68 16 35 H 0.06 0.87 4.49 -51.91 -0.23 0.64 16 36 H 0.05 0.77 8.16 -51.81 -0.42 0.35 16 37 H 0.06 0.95 6.70 -51.98 -0.35 0.60 16 38 H 0.06 1.17 8.14 -51.95 -0.42 0.75 16 39 H 0.06 1.25 8.14 -51.94 -0.42 0.83 16 40 H 0.28 8.58 6.49 -40.82 -0.27 8.32 16 41 H 0.08 1.69 8.16 -51.83 -0.42 1.27 16 42 H 0.07 1.40 5.29 -51.97 -0.28 1.12 16 43 H 0.09 1.18 8.17 -51.73 -0.42 0.76 16 44 H 0.05 0.65 6.03 -52.09 -0.31 0.33 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -30.90 317.02 -7.93 -38.82 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.28 Total: 2.91 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -0.47 Total: -24.65 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.75 Total: -26.44 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.62 Total: -15.78 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.90 -7.93 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383734476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.885 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds