Wall clock time and date at job start Mon Mar 30 2020 07:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54518 * 109.47373 * 2 1 4 4 C 1.53285 * 107.24675 * 306.56861 * 3 2 1 5 5 C 1.51948 * 107.88704 * 187.53638 * 3 2 1 6 6 C 1.52418 * 114.86779 * 202.15056 * 5 3 2 7 7 C 1.52777 * 110.58609 * 280.63519 * 6 5 3 8 8 C 1.53137 * 110.17470 * 186.13564 * 7 6 5 9 9 C 1.53058 * 109.41811 * 56.22561 * 8 7 6 10 10 C 1.53122 * 108.93482 * 303.47675 * 9 8 7 11 11 H 1.08944 * 109.51491 * 297.23526 * 10 9 8 12 12 C 1.50815 * 109.30428 * 177.61218 * 10 9 8 13 13 H 1.08006 * 119.99866 * 359.79789 * 12 10 9 14 14 C 1.37877 * 120.00413 * 179.80436 * 12 10 9 15 15 N 1.31514 * 120.00089 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99938 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47297 * 269.99556 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99737 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99730 * 16 14 12 20 20 O 1.42582 * 109.31950 * 57.77639 * 10 9 8 21 21 C 1.52712 * 110.98863 * 43.33539 * 6 5 3 22 22 C 1.53092 * 109.15607 * 306.08144 * 21 6 5 23 23 O 1.41935 * 107.56221 * 64.99641 * 3 2 1 24 24 H 1.08998 * 109.46843 * 59.99899 * 1 2 3 25 25 H 1.08997 * 109.47671 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46960 * 300.00348 * 1 2 3 27 27 H 1.09003 * 109.47455 * 239.99780 * 2 1 3 28 28 H 1.09001 * 109.47238 * 119.99458 * 2 1 3 29 29 H 1.08992 * 109.47288 * 176.75516 * 4 3 2 30 30 H 1.09004 * 109.47030 * 296.76108 * 4 3 2 31 31 H 1.09001 * 109.46759 * 56.75305 * 4 3 2 32 32 H 1.10040 * 108.85343 * 80.22469 * 5 3 2 33 33 H 1.10001 * 108.96283 * 324.27474 * 5 3 2 34 34 H 1.09158 * 109.48687 * 306.36976 * 7 6 5 35 35 H 1.09039 * 110.06414 * 66.41457 * 7 6 5 36 36 H 1.09204 * 109.31454 * 175.95941 * 8 7 6 37 37 H 1.08918 * 109.82778 * 295.69676 * 8 7 6 38 38 H 1.08967 * 109.64692 * 183.61170 * 9 8 7 39 39 H 1.08981 * 109.61337 * 63.26958 * 9 8 7 40 40 H 0.96998 * 119.99255 * 0.02562 * 15 14 12 41 41 H 1.09171 * 109.58644 * 65.75390 * 21 6 5 42 42 H 1.08931 * 110.17096 * 185.92718 * 21 6 5 43 43 H 1.09357 * 109.02909 * 180.48733 * 22 21 6 44 44 H 1.08722 * 109.91454 * 299.79015 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0451 1.4568 0.0000 4 6 1.3743 2.1760 -1.1757 5 6 3.5522 1.4189 -0.1897 6 6 4.2911 2.6593 0.2988 7 6 4.1772 3.7895 -0.7228 8 6 5.0462 4.9762 -0.2965 9 6 6.4916 4.5080 -0.1115 10 6 6.5171 3.3646 0.9065 11 1 6.1658 3.7285 1.8714 12 6 7.9300 2.8574 1.0515 13 1 8.7258 3.3036 0.4735 14 6 8.2058 1.8242 1.9217 15 7 7.2368 1.2811 2.6258 16 14 9.9557 1.1957 2.1006 17 1 10.1922 0.1041 1.1218 18 1 10.1575 0.6779 3.4777 19 1 10.9089 2.3052 1.8444 20 8 5.6766 2.3073 0.4496 21 6 3.7564 3.1160 1.6544 22 6 2.2397 3.3008 1.5599 23 8 1.6486 2.0512 1.2264 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6687 3.2254 -1.1755 30 1 1.6857 1.7114 -2.1113 31 1 0.2913 2.1025 -1.0765 32 1 3.7726 1.2783 -1.2585 33 1 3.9563 0.5399 0.3339 34 1 4.5086 3.4322 -1.6996 35 1 3.1423 4.1249 -0.7958 36 1 5.0112 5.7459 -1.0704 37 1 4.6715 5.3917 0.6379 38 1 7.1006 5.3346 0.2534 39 1 6.8868 4.1558 -1.0641 40 1 6.3281 1.6073 2.5326 41 1 3.9816 2.3608 2.4100 42 1 4.2187 4.0595 1.9420 43 1 1.8602 3.6362 2.5291 44 1 2.0041 4.0522 0.8103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383734476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:30 Heat of formation + Delta-G solvation = -137.363208 kcal Electronic energy + Delta-G solvation = -22946.668285 eV Core-core repulsion = 19862.122522 eV Total energy + Delta-G solvation = -3084.545763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.72188 -39.41772 -35.67461 -35.39526 -34.32621 -33.45547 -31.09730 -29.88759 -28.63503 -26.89360 -25.01139 -24.93957 -23.90828 -22.33923 -20.81284 -19.31735 -19.19495 -17.69265 -17.18009 -16.48271 -16.06125 -15.83825 -15.70923 -15.59722 -15.46564 -15.31863 -14.87116 -14.36044 -13.95922 -13.64147 -13.43269 -13.19080 -12.96918 -12.89118 -12.73847 -12.68014 -12.62768 -12.49789 -12.01543 -11.97993 -11.95074 -11.87411 -11.64261 -11.60498 -11.21547 -10.96061 -10.70511 -10.48200 -10.29326 -9.90604 -8.62231 -6.42740 1.50042 1.59314 1.76945 2.54378 2.71193 2.94573 3.37910 3.63948 3.70957 3.80896 3.91404 3.95645 4.02335 4.10658 4.23411 4.27850 4.29750 4.40318 4.42761 4.58697 4.63345 4.65070 4.66214 4.73556 4.74758 4.89591 4.91762 4.95945 4.99172 5.03567 5.09542 5.12792 5.17617 5.19636 5.27902 5.29511 5.40249 5.50670 5.55378 6.01252 6.13762 6.47246 6.58273 6.98071 7.50506 8.76744 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.023793 B = 0.006334 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.530023 B = 4419.446162 C = 5023.804889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.129 3.871 4 C -0.174 4.174 5 C -0.124 4.124 6 C 0.111 3.889 7 C -0.129 4.129 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.203 3.797 11 H -0.018 1.018 12 C -0.625 4.625 13 H 0.052 0.948 14 C -0.020 4.020 15 N -0.919 5.919 16 Si 1.118 2.882 17 H -0.277 1.277 18 H -0.281 1.281 19 H -0.267 1.267 20 O -0.401 6.401 21 C -0.170 4.170 22 C 0.075 3.925 23 O -0.383 6.383 24 H 0.073 0.927 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.266 0.734 41 H 0.036 0.964 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 3.727 -7.531 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.090 3.910 4 C -0.231 4.231 5 C -0.162 4.162 6 C 0.071 3.929 7 C -0.166 4.166 8 C -0.154 4.154 9 C -0.170 4.170 10 C 0.147 3.853 11 H -0.001 1.001 12 C -0.662 4.662 13 H 0.070 0.930 14 C -0.222 4.222 15 N -0.555 5.555 16 Si 0.939 3.061 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.192 1.192 20 O -0.322 6.322 21 C -0.208 4.208 22 C -0.001 4.001 23 O -0.302 6.302 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.893 2.363 -6.681 14.712 hybrid contribution -0.234 1.277 -0.494 1.389 sum -13.127 3.640 -7.175 15.396 Atomic orbital electron populations 1.21771 0.93589 1.02072 1.02583 1.21972 0.98017 0.93223 1.02104 1.21332 0.90305 0.94334 0.85020 1.22621 1.02202 1.00925 0.97310 1.21964 0.95400 0.96850 1.01996 1.21244 0.83709 0.94307 0.93613 1.22112 1.01056 0.95162 0.98303 1.21629 0.94143 0.97748 1.01901 1.21991 0.97245 0.98326 0.99445 1.19614 0.89023 0.85922 0.90707 1.00073 1.22412 0.92795 1.23243 1.27714 0.92982 1.27346 1.08817 0.93938 0.92059 1.70749 1.02602 1.41880 1.40220 0.82955 0.69982 0.76322 0.76837 1.20303 1.20626 1.19171 1.88332 1.16959 1.39794 1.87090 1.22598 0.98950 1.01312 0.97951 1.22447 0.89676 0.86040 1.01924 1.87362 1.66697 1.36343 1.39805 0.90837 0.91954 0.92936 0.89885 0.93414 0.92041 0.90485 0.89769 0.90475 0.94257 0.91844 0.88900 0.89678 0.91979 0.92334 0.93340 0.92299 0.94497 0.91380 0.87685 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.24 71.98 0.66 -2.19 16 2 C -0.12 -2.94 4.92 31.11 0.15 -2.78 16 3 C 0.13 3.63 0.80 -10.53 -0.01 3.62 16 4 C -0.17 -3.64 7.90 72.08 0.57 -3.07 16 5 C -0.12 -4.43 3.91 30.05 0.12 -4.32 16 6 C 0.11 4.36 0.78 -11.16 -0.01 4.35 16 7 C -0.13 -4.13 4.39 30.57 0.13 -3.99 16 8 C -0.12 -3.84 5.67 30.66 0.17 -3.66 16 9 C -0.13 -5.65 5.37 30.65 0.16 -5.49 16 10 C 0.20 10.76 1.76 29.93 0.05 10.82 16 11 H -0.02 -1.03 6.45 -2.42 -0.02 -1.05 16 12 C -0.62 -37.02 8.79 25.64 0.23 -36.80 16 13 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 14 C -0.02 -1.19 5.40 84.65 0.46 -0.73 16 15 N -0.92 -58.85 13.53 21.45 0.29 -58.56 16 16 Si 1.12 52.11 29.90 68.60 2.05 54.16 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 20 O -0.40 -21.03 8.39 -148.98 -1.25 -22.28 16 21 C -0.17 -6.49 4.26 30.53 0.13 -6.36 16 22 C 0.08 2.17 6.53 72.01 0.47 2.64 16 23 O -0.38 -11.71 9.30 -148.96 -1.39 -13.09 16 24 H 0.07 1.21 6.11 -2.39 -0.01 1.19 16 25 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.15 7.76 -2.39 -0.02 1.13 16 27 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.26 5.05 -2.39 -0.01 1.24 16 30 H 0.08 1.44 8.01 -2.38 -0.02 1.42 16 31 H 0.08 1.51 5.94 -2.39 -0.01 1.49 16 32 H 0.08 2.56 7.71 -1.83 -0.01 2.54 16 33 H 0.04 1.67 7.85 -1.85 -0.01 1.65 16 34 H 0.06 2.05 8.05 -2.30 -0.02 2.03 16 35 H 0.09 2.36 4.49 -2.37 -0.01 2.35 16 36 H 0.08 2.26 8.16 -2.28 -0.02 2.24 16 37 H 0.06 1.97 6.70 -2.43 -0.02 1.96 16 38 H 0.06 2.42 8.14 -2.40 -0.02 2.40 16 39 H 0.05 2.12 8.14 -2.40 -0.02 2.10 16 40 H 0.27 17.42 6.49 -92.71 -0.60 16.82 16 41 H 0.04 1.68 8.16 -2.30 -0.02 1.66 16 42 H 0.07 2.63 5.29 -2.42 -0.01 2.62 16 43 H 0.11 2.65 8.17 -2.20 -0.02 2.63 16 44 H 0.07 1.74 6.03 -2.53 -0.02 1.73 16 Total: -1.00 -70.92 317.02 4.15 -66.77 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.15 Total: 20.98 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.30 Total: -47.98 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.29 Total: -58.56 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -2.64 Total: -35.38 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Total: -70.92 4.15 -66.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383734476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.594 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds